Pregenerated sensors for LINC01050 (Homo sapiens)

Ensembl gene IDs: ENSG00000271216

Ensembl transcript IDs: ENST00000604485.2

Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	AGAAATCGCACAGTATGGCTCCGTGCTCTGAACATGCTCTGTGTCTaGCCTTTTTCAAAGGCGAGACAGCCACCTCGAGGCCAGTCAGAC	+
Preference number: 5 (lower is better) Translates to: RNRTVWLRALNMLCV*PFSKARQPPRGQSD Trigger: GTCTGACTGGCCTCGAGGTGGCTGTCTCGCCTTTGAAAAAGGGCAGACACAGAGCATGTTCAGAGCACGGAGCCATACTGTGCGATTTCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000604485.2
CDS GCA 90 bp	TTGCCTTCCGCCATGATTGTAAATTTCTCGAGGCTTCCCAAGCCATaGCTCCTGTACAGCCTGTGGAACTGTGAGTCAATCAAACCTCTT	+
Preference number: 5 (lower is better) Translates to: LPSAMIVNFSRLPKP*LLYSLWNCESIKPL Trigger: AAGAGGTTTGATTGACTCACAGTTCCACAGGCTGTACAGGAGGCATGGCTTGGGAAGCCTCGAGAAATTTACAATCATGGCGGAAGGCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000604485.2
CDS GCA 72 bp	ACAGTATGGCTCCGTGCTCTGAACATGCTCTGTGTCTaGCCTTTTTCAAAGGCGAGACAGCCACCTCGAGGC	+
Preference number: 6 (lower is better) Translates to: TVWLRALNMLCV*PFSKARQPPRG Trigger: GCCTCGAGGTGGCTGTCTCGCCTTTGAAAAAGGGCAGACACAGAGCATGTTCAGAGCACGGAGCCATACTGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000604485.2
CDS TCA 72 bp	TGGCCACCTTCTTCAGGACAGCAACTGACAGTGTTGTaGAGTGCTTGGCTTTGTCCTTCTCGCAGGCCATCT	+
Preference number: 6 (lower is better) Translates to: WPPSSGQQLTVL*SAWLCPSRRPS Trigger: AGATGGCCTGCGAGAAGGACAAAGCCAAGCACTTCACAACACTGTCAGTTGCTGTCCTGAAGAAGGTGGCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000604485.2
CDS GCA 72 bp	AAATGTGTAGCACCTCCTCCTGCTCTCTATTCCTCCTaGTCCTGCCATGTGAGACATGCTGGCTTCCCCTTT	+
Preference number: 6 (lower is better) Translates to: KCVAPPPALYSS*SCHVRHAGFPF Trigger: AAAGGGGAAGCCAGCATGTCTCACATGGCAGGAGCAGGAGGAATAGAGAGCAGGAGGAGGTGCTACACATTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000604485.2
CDS GCA 72 bp	ACCTTCTTCAGGACAGCAACTGACAGTGTTGTGAAGTaGTTGGCTTTGTCCTTCTCGCAGGCCATCTGGGCT	+
Preference number: 6 (lower is better) Translates to: TFFRTATDSVVK*LALSFSQAIWA Trigger: AGCCCAGATGGCCTGCGAGAAGGACAAAGCCAAGCACTTCACAACACTGTCAGTTGCTGTCCTGAAGAAGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000604485.2
CDS CAA 72 bp	TTCTTCAGGACAGCAACTGACAGTGTTGTGAAGTGCTaGGCTTTGTCCTTCTCGCAGGCCATCTGGGCTAAG	+
Preference number: 6 (lower is better) Translates to: FFRTATDSVVKC*ALSFSQAIWAK Trigger: CTTAGCCCAGATGGCCTGCGAGAAGGACAAAGCCAAGCACTTCACAACACTGTCAGTTGCTGTCCTGAAGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000604485.2
CDS GCA 72 bp	GCCATGATTGTAAATTTCTCGAGGCTTCCCAAGCCATaGCTCCTGTACAGCCTGTGGAACTGTGAGTCAATC	+
Preference number: 6 (lower is better) Translates to: AMIVNFSRLPKP*LLYSLWNCESI Trigger: GATTGACTCACAGTTCCACAGGCTGTACAGGAGGCATGGCTTGGGAAGCCTCGAGAAATTTACAATCATGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000604485.2
CDS TCA 72 bp	CTCTTTGAAGAAATCGCACAGTATGGCTCCGTGCTCTaGACATGCTCTGTGTCTGCCCTTTTTCAAAGGCGA	+
Preference number: 6 (lower is better) Translates to: LFEEIAQYGSVL*TCSVSALFQRR Trigger: TCGCCTTTGAAAAAGGGCAGACACAGAGCATGTTCAGAGCACGGAGCCATACTGTGCGATTTCTTCAAAGAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000604485.2
CDS CCA 72 bp	GCCACACCAGACATAGGCCATCAGGTCCACCAGGACTaGTGTCTTTATTGTTGCATGTTTCCATTCTTCACA	+
Preference number: 6 (lower is better) Translates to: ATPDIGHQVHQD*CLYCCMFPFFT Trigger: TGTGAAGAATGGAAACATGCAACAATAAAGACACCAGTCCTGGTGGACCTGATGGCCTATGTCTGGTGTGGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000604485.2
CDS CAA 90 bp	ACCAGACATAGGCCATCAGGTCCACCAGGACTGGTGTCTTTATTGTaGCATGTTTCCATTCTTCACACAGCACCTGACTTAACCATTCAC	+
Preference number: 6 (lower is better) Translates to: TRHRPSGPPGLVSLL*HVSILHTAPDLTIH Trigger: GTGAATGGTTAAGTCAGGTGCTGTGTGAAGAATGGAAACATGCAACAATAAAGACACCAGTCCTGGTGGACCTGATGGCCTATGTCTGGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000604485.2
CDS CAA 90 bp	CACACCAGACATAGGCCATCAGGTCCACCAGGACTGGTGTCTTTATaGTTGCATGTTTCCATTCTTCACACAGCACCTGACTTAACCATT	+
Preference number: 6 (lower is better) Translates to: HTRHRPSGPPGLVSL*LHVSILHTAPDLTI Trigger: AATGGTTAAGTCAGGTGCTGTGTGAAGAATGGAAACATGCAACAATAAAGACACCAGTCCTGGTGGACCTGATGGCCTATGTCTGGTGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000604485.2
CDS CAA 72 bp	AGGCCATCAGGTCCACCAGGACTGGTGTCTTTATTGTaGCATGTTTCCATTCTTCACACAGCACCTGACTTA	+
Preference number: 6 (lower is better) Translates to: RPSGPPGLVSLL*HVSILHTAPDL Trigger: TAAGTCAGGTGCTGTGTGAAGAATGGAAACATGCAACAATAAAGACACCAGTCCTGGTGGACCTGATGGCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000604485.2
CDS GCA 72 bp	AAGCTCTCTTTGAAGAAATCGCACAGTATGGCTCCGTaGTCTGAACATGCTCTGTGTCTGCCCTTTTTCAAA	+
Preference number: 6 (lower is better) Translates to: KLSLKKSHSMAP*SEHALCLPFFK Trigger: TTTGAAAAAGGGCAGACACAGAGCATGTTCAGAGCACGGAGCCATACTGTGCGATTTCTTCAAAGAGAGCTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000604485.2
CDS TCA 72 bp	TCTTCCAACAATTTGACATCCTTGAGGTTGAATAGCTaGAAACTGCACATAGCGCAGCACTCCACACAAAAC	+
Preference number: 6 (lower is better) Translates to: SSNNLTSLRLNS*KLHIAQHSTQN Trigger: GTTTTGTGTGGAGTGCTGCGCTATGTGCAGTTTTCAGCTATTCAACCTCAAGGATGTCAAATTGTTGGAAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000604485.2
CDS CAA 72 bp	AAGAACTTGGGCAAAGTCAAATCTCCCCACTTGATTTaGTTTATGTTCCTCTCTTGGGATTTGTCTTGGGCA	+
Preference number: 6 (lower is better) Translates to: KNLGKVKSPHLI*FMFLSWDLSWA Trigger: TGCCCAAGACAAATCCCAAGAGAGGAACATAAACAAAATCAAGTGGGGAGATTTGACTTTGCCCAAGTTCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000604485.2
CDS CAA 72 bp	TGGCTATTACATCATCCCTGCAAGGCTGATTGGATGTaGAGGAACAAGTATGTAAAGAGAAGTGTATACATA	+
Preference number: 6 (lower is better) Translates to: WLLHHPCKADWM*RNKYVKRSVYI Trigger: TATGTATACACTTCTCTTTACATACTTGTTCCTCAACATCCAATCAGCCTTGCAGGGATGATGTAATAGCCA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000604485.2
CDS CAA 72 bp	TTTAAGTCAGCTCCATCCAAGTTTGATTATCCTTCTTaGAATCTCTTCCAACAATTTGACATCCTTGAGGTT	+
Preference number: 6 (lower is better) Translates to: FKSAPSKFDYPS*NLFQQFDILEV Trigger: AACCTCAAGGATGTCAAATTGTTGGAAGAGATTCAAAGAAGGATAATCAAACTTGGATGGAGCTGACTTAAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000604485.2

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