Pregenerated sensors for LINC01049 (Homo sapiens)
Ensembl gene IDs: ENSG00000234384Ensembl transcript IDs: ENST00000426840.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TCTTTCTTCTGTTTGTCTCAGCAGACTTCTGCCCGGGGCGTGGAATaGGTACATTCTTCCCTGTCAAGTCCTGGGAATTATTTTCCACCA | + |
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Preference number: 5 (lower is better) Translates to: SFFCLSQQTSARGVE*VHSSLSSPGNYFPP Trigger: TGGTGGAAAATAATTCCCAGGACTTGACAGGGAAGAATGTACTCATTCCACGCCCCGGGCAGAAGTCTGCTGAGACAAACAGAAGAAAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000426840.1 |
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| CDS GCA 90 bp | ATTTGCTCACTAACTATCTTTCTTCTGTTTGTCTCAGCAGACTTCTaGCCGGGGCGTGGAATGAGTACATTCTTCCCTGTCAAGTCCTGG | + |
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Preference number: 5 (lower is better) Translates to: ICSLTIFLLFVSADF*PGRGMSTFFPVKSW Trigger: CCAGGACTTGACAGGGAAGAATGTACTCATTCCACGCCCCGGGCAGAAGTCTGCTGAGACAAACAGAAGAAAGATAGTTAGTGAGCAAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000426840.1 |
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| CDS CCA 90 bp | AACTATCTTTCTTCTGTTTGTCTCAGCAGACTTCTGCCCGGGGCGTaGAATGAGTACATTCTTCCCTGTCAAGTCCTGGGAATTATTTTC | + |
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Preference number: 5 (lower is better) Translates to: NYLSSVCLSRLLPGA*NEYILPCQVLGIIF Trigger: GAAAATAATTCCCAGGACTTGACAGGGAAGAATGTACTCATTCCACGCCCCGGGCAGAAGTCTGCTGAGACAAACAGAAGAAAGATAGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000426840.1 |
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| CDS CCA 72 bp | TCTTCTGTTTGTCTCAGCAGACTTCTGCCCGGGGCGTaGAATGAGTACATTCTTCCCTGTCAAGTCCTGGGA | + |
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Preference number: 6 (lower is better) Translates to: SSVCLSRLLPGA*NEYILPCQVLG Trigger: TCCCAGGACTTGACAGGGAAGAATGTACTCATTCCACGCCCCGGGCAGAAGTCTGCTGAGACAAACAGAAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000426840.1 |
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| CDS TCA 72 bp | TGTTTGTCTCAGCAGACTTCTGCCCGGGGCGTGGAATaGGTACATTCTTCCCTGTCAAGTCCTGGGAATTAT | + |
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Preference number: 6 (lower is better) Translates to: CLSQQTSARGVE*VHSSLSSPGNY Trigger: ATAATTCCCAGGACTTGACAGGGAAGAATGTACTCATTCCACGCCCCGGGCAGAAGTCTGCTGAGACAAACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000426840.1 |
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| CDS CAA 90 bp | GTGCTCCCACGGACTTACAGGTGCTTCTGTTTTGTAGCACTGGTTTaGCAGTTTTGTTGCTTACAGGAGGAGTGCAAATCAGCCATCAGG | + |
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Preference number: 6 (lower is better) Translates to: VLPRTYRCFCFVALV*QFCCLQEECKSAIR Trigger: CCTGATGGCTGATTTGCACTCCTCCTGTAAGCAACAAAACTGCAAAACCAGTGCTACAAAACAGAAGCACCTGTAAGTCCGTGGGAGCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000426840.1 |
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| CDS GCA 72 bp | CTAACTATCTTTCTTCTGTTTGTCTCAGCAGACTTCTaGCCGGGGCGTGGAATGAGTACATTCTTCCCTGTC | + |
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Preference number: 6 (lower is better) Translates to: LTIFLLFVSADF*PGRGMSTFFPV Trigger: GACAGGGAAGAATGTACTCATTCCACGCCCCGGGCAGAAGTCTGCTGAGACAAACAGAAGAAAGATAGTTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000426840.1 |
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| CDS CCA 72 bp | GGGCGTGGAATGAGTACATTCTTCCCTGTCAAGTCCTaGGAATTATTTTCCACCATGAGCACAGTGCTCTTT | + |
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Preference number: 6 (lower is better) Translates to: GRGMSTFFPVKS*ELFSTMSTVLF Trigger: AAAGAGCACTGTGCTCATGGTGGAAAATAATTCCCAGGACTTGACAGGGAAGAATGTACTCATTCCACGCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000426840.1 |
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| CDS TCA 72 bp | ACCATGAGCACAGTGCTCTTTTTAGCTTTGCATCACTaGGTAACTGTCAGGAGACAAGCGCTCTTCAACAAA | + |
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Preference number: 6 (lower is better) Translates to: TMSTVLFLALHH*VTVRRQALFNK Trigger: TTTGTTGAAGAGCGCTTGTCTCCTGACAGTTACTCAGTGATGCAAAGCTAAAAAGAGCACTGTGCTCATGGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000426840.1 |
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| CDS CAA 72 bp | TTCTCAAACTATTTCGAGTTTGTTATCCAATTCCGTTaGGTCAATGTAATCAAGTTGAACATTCACCATCTG | + |
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Preference number: 6 (lower is better) Translates to: FSNYFEFVIQFR*VNVIKLNIHHL Trigger: CAGATGGTGAATGTTCAACTTGATTACATTGACCAAACGGAATTGGATAACAAACTCGAAATAGTTTGAGAA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000426840.1 |
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