Pregenerated sensors for LINC01048 (Homo sapiens)
Ensembl gene IDs: ENSG00000230390Ensembl transcript IDs: ENST00000414480.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TGCATCATGCGCTGCACCATCTCTCCAGTGCTGTTCTCATCCTTGTaGTTTTCCAGGGCTTGTCACCACATCCATTTTTCAGGTAGCAGG | + |
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Preference number: 5 (lower is better) Translates to: CIMRCTISPVLFSSL*FSRACHHIHFSGSR Trigger: CCTGCTACCTGAAAAATGGATGTGGTGACAAGCCCTGGAAAACCACAAGGATGAGAACAGCACTGGAGAGATGGTGCAGCGCATGATGCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000414480.1 |
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| CDS GCA 90 bp | ACTCCTCACTCTTCAGAAAGCCCTCTGATCACCTCTGCTCACAAGTaGTACTTTGGGAAGGGTGGCTCTCATGACACAATTCTATGTGGC | + |
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Preference number: 5 (lower is better) Translates to: TPHSSESPLITSAHK*YFGKGGSHDTILCG Trigger: GCCACATAGAATTGTGTCATGAGAGCCACCCTTCCCAAAGTAGCACTTGTGAGCAGAGGTGATCAGAGGGCTTTCTGAAGAGTGAGGAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000414480.1 |
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| CDS GCA 90 bp | AAATTCTACTCAGCCATCAGATACCTAGGCAATTGCATCATGCGCTaGACCATCTCTCCAGTGCTGTTCTCATCCTTGTGGTTTTCCAGG | + |
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Preference number: 5 (lower is better) Translates to: KFYSAIRYLGNCIMR*TISPVLFSSLWFSR Trigger: CCTGGAAAACCACAAGGATGAGAACAGCACTGGAGAGATGGTGCAGCGCATGATGCAATTGCCTAGGTATCTGATGGCTGAGTAGAATTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000414480.1 |
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| CDS GCA 72 bp | CACTCCTCACTCTTCAGAAAGCCCTCTGATCACCTCTaGTCACAAGTGCTACTTTGGGAAGGGTGGCTCTCA | + |
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Preference number: 6 (lower is better) Translates to: HSSLFRKPSDHL*SQVLLWEGWLS Trigger: TGAGAGCCACCCTTCCCAAAGTAGCACTTGTGAGCAGAGGTGATCAGAGGGCTTTCTGAAGAGTGAGGAGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000414480.1 |
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| CDS CCA 72 bp | GGGAAGGGTGGCTCTCATGACACAATTCTATGTGGCTaGGGAGGCCTCACAATCATGATGGAAGGTGAAAGC | + |
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Preference number: 6 (lower is better) Translates to: GKGGSHDTILCG*GGLTIMMEGES Trigger: GCTTTCACCTTCCATCATGATTGTGAGGCCTCCCCAGCCACATAGAATTGTGTCATGAGAGCCACCCTTCCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000414480.1 |
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| CDS GCA 72 bp | TCAGCCATCAGATACCTAGGCAATTGCATCATGCGCTaGACCATCTCTCCAGTGCTGTTCTCATCCTTGTGG | + |
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Preference number: 6 (lower is better) Translates to: SAIRYLGNCIMR*TISPVLFSSLW Trigger: CCACAAGGATGAGAACAGCACTGGAGAGATGGTGCAGCGCATGATGCAATTGCCTAGGTATCTGATGGCTGA 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000414480.1 |
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| CDS CAA 90 bp | AGTCGGAGGAGAGAAATTCTACTCAGCCATCAGATACCTAGGCAATaGCATCATGCGCTGCACCATCTCTCCAGTGCTGTTCTCATCCTT | + |
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Preference number: 6 (lower is better) Translates to: SRRREILLSHQIPRQ*HHALHHLSSAVLIL Trigger: AAGGATGAGAACAGCACTGGAGAGATGGTGCAGCGCATGATGCAATTGCCTAGGTATCTGATGGCTGAGTAGAATTTCTCTCCTCCGACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000414480.1 |
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| CDS GCA 72 bp | TCTTCAGAAAGCCCTCTGATCACCTCTGCTCACAAGTaGTACTTTGGGAAGGGTGGCTCTCATGACACAATT | + |
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Preference number: 6 (lower is better) Translates to: SSESPLITSAHK*YFGKGGSHDTI Trigger: AATTGTGTCATGAGAGCCACCCTTCCCAAAGTAGCACTTGTGAGCAGAGGTGATCAGAGGGCTTTCTGAAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000414480.1 |
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| CDS CAA 72 bp | AGAGAAATTCTACTCAGCCATCAGATACCTAGGCAATaGCATCATGCGCTGCACCATCTCTCCAGTGCTGTT | + |
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Preference number: 6 (lower is better) Translates to: REILLSHQIPRQ*HHALHHLSSAV Trigger: AACAGCACTGGAGAGATGGTGCAGCGCATGATGCAATTGCCTAGGTATCTGATGGCTGAGTAGAATTTCTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000414480.1 |
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| CDS CCA 72 bp | AGTCTTAACGACTGTCTCACTCCCTTTTCTTCTTTTTaGCCCTCTGAAGTCACTCCTCACTCTTCAGAAAGC | + |
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Preference number: 6 (lower is better) Translates to: SLNDCLTPFSSF*PSEVTPHSSES Trigger: GCTTTCTGAAGAGTGAGGAGTGACTTCAGAGGGCCAAAAAGAAGAAAAGGGAGTGAGACAGTCGTTAAGACT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000414480.1 |
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| CDS CAA 72 bp | TCCACTTTAAGTTTCAGACATCTCATTAGCCAGAACTaGGTCACGTGCCACATCCATCAAATCAGCCACTTG | + |
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Preference number: 6 (lower is better) Translates to: STLSFRHLISQN*VTCHIHQISHL Trigger: CAAGTGGCTGATTTGATGGATGTGGCACGTGACCAAGTTCTGGCTAATGAGATGTCTGAAACTTAAAGTGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000414480.1 |
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| CDS CAA 90 bp | TACATCTCTTCCACTTTAAGTTTCAGACATCTCATTAGCCAGAACTaGGTCACGTGCCACATCCATCAAATCAGCCACTTGCAATGCTGT | + |
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Preference number: 6 (lower is better) Translates to: YISSTLSFRHLISQN*VTCHIHQISHLQCC Trigger: ACAGCATTGCAAGTGGCTGATTTGATGGATGTGGCACGTGACCAAGTTCTGGCTAATGAGATGTCTGAAACTTAAAGTGGAAGAGATGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000414480.1 |
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