Pregenerated sensors for LINC01047 (Homo sapiens)

Ensembl gene IDs: ENSG00000232225

Ensembl transcript IDs: ENST00000415193.5, ENST00000445027.2

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	GCCAAAGGCCAAAAAGTGATCTGTAATCCCAGCTGTCCAGGAGGCTaGGGTTTGGTGGCGGGTACCTTTAATCCCAGCTGTCCAGGAGGC	+
Preference number: 5 (lower is better) Translates to: AKGQKVICNPSCPGG*GLVAGTFNPSCPGG Trigger: GCCTCCTGGACAGCTGGGATTAAAGGTACCCGCCACCAAACCTCAGCCTCCTGGACAGCTGGGATTACAGATCACTTTTTGGCCTTTGGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000445027.2
CDS TCA 90 bp	CATTCTGAAAGCTTTATTAAATACACAGTACAAGCCACTCTATGTTaGAACCTATTTTTCCACAACTGGCACTGGAAGAGTGATATCATT	+
Preference number: 5 (lower is better) Translates to: HSESFIKYTVQATLC*NLFFHNWHWKSDII Trigger: AATGATATCACTCTTCCAGTGCCAGTTGTGGAAAAATAGGTTTCAACATAGAGTGGCTTGTACTGTGTATTTAATAAAGCTTTCAGAATG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000415193.5
CDS TCA 72 bp	GTGGCGGGTACCTTTAATCCCAGCTGTCCAGGAGGCTaGGGCAGAAGAACCACTGGAACCCGGGAGGCAGAG	+
Preference number: 6 (lower is better) Translates to: VAGTFNPSCPGG*GRRTTGTREAE Trigger: CTCTGCCTCCCGGGTTCCAGTGGTTCTTCTGCCTCAGCCTCCTGGACAGCTGGGATTAAAGGTACCCGCCAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445027.2
CDS CCA 72 bp	TCTGTAATCCCAGCTGTCCAGGAGGCTGAGGTTTGGTaGCGGGTACCTTTAATCCCAGCTGTCCAGGAGGCT	+
Preference number: 6 (lower is better) Translates to: SVIPAVQEAEVW*RVPLIPAVQEA Trigger: AGCCTCCTGGACAGCTGGGATTAAAGGTACCCGCCACCAAACCTCAGCCTCCTGGACAGCTGGGATTACAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445027.2
CDS TCA 72 bp	TTTCCTTTGATAGAATCCATTTTGAATGTGATGCCGTaGAATGAGTCATTCAGTGGGACCCAGACAAGTGCC	+
Preference number: 6 (lower is better) Translates to: FPLIESILNVMP*NESFSGTQTSA Trigger: GGCACTTGTCTGGGTCCCACTGAATGACTCATTTCACGGCATCACATTCAAAATGGATTCTATCAAAGGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000415193.5 ENST00000445027.2
CDS TCA 72 bp	AGCTTTATTAAATACACAGTACAAGCCACTCTATGTTaGAACCTATTTTTCCACAACTGGCACTGGAAGAGT	+
Preference number: 6 (lower is better) Translates to: SFIKYTVQATLC*NLFFHNWHWKS Trigger: ACTCTTCCAGTGCCAGTTGTGGAAAAATAGGTTTCAACATAGAGTGGCTTGTACTGTGTATTTAATAAAGCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000415193.5

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