Pregenerated sensors for LINC01040 (Homo sapiens)

Ensembl gene IDs: ENSG00000226037

Ensembl transcript IDs: ENST00000425048.1

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	AGTTTGGCTGGAATAGGAAGTAGTAAGAGGGTGGTAGCAAGGATGTaGCTGGCAGTGGAATTGAAGCAGAGATGGTCCTTTGGGAGGGAA	+
Preference number: 5 (lower is better) Translates to: SLAGIGSSKRVVARM*LAVELKQRWSFGRE Trigger: TTCCCTCCCAAAGGACCATCTCTGCTTCAATTCCACTGCCAGCCACATCCTTGCTACCACCCTCTTACTACTTCCTATTCCAGCCAAACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000425048.1
CDS CCA 72 bp	GGAATAGGAAGTAGTAAGAGGGTGGTAGCAAGGATGTaGCTGGCAGTGGAATTGAAGCAGAGATGGTCCTTT	+
Preference number: 6 (lower is better) Translates to: GIGSSKRVVARM*LAVELKQRWSF Trigger: AAAGGACCATCTCTGCTTCAATTCCACTGCCAGCCACATCCTTGCTACCACCCTCTTACTACTTCCTATTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000425048.1
CDS CCA 72 bp	AAGCTTGTGGTCAGTAGAAGTGGGCTGAAGGTGGTCTaGATGAAAATTAAGACCTCTCTGAGGTTTCCTTTT	+
Preference number: 6 (lower is better) Translates to: KLVVSRSGLKVV*MKIKTSLRFPF Trigger: AAAAGGAAACCTCAGAGAGGTCTTAATTTTCATCCAGACCACCTTCAGCCCACTTCTACTGACCACAAGCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000425048.1

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