RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LINC01039 (Homo sapiens)

Ensembl gene IDs: ENSG00000234168

Ensembl transcript IDs: ENST00000437113.2

Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp TCTGTAGGTCTTCCTTCAGCCATGTTCCCCCAGGGAGGCTTGGCCTaGCTCAGACTCTCCTTGCGCTCCAGCCCCCGAGGAGTTTCTAAA +
Preference number: 5 (lower is better)
Translates to: SVGLPSAMFPQGGLA*LRLSLRSSPRGVSK
Trigger: TTTAGAAACTCCTCGGGGGCTGGAGCGCAAGGAGAGTCTGAGCCAGGCCAAGCCTCCCTGGGGGAACATGGCTGAAGGAAGACCTACAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000437113.2
CDS GCA 90 bp TCAGCAGGGAAAGATCCTTCTCTCTTCTTCCAGCCTCTCTTGGTTTaGTGGCAATCCTTGGCCTGCTTCGGCTTGCAGCTGCATGGCTCT +
Preference number: 5 (lower is better)
Translates to: SAGKDPSLFFQPLLV*WQSLACFGLQLHGS
Trigger: AGAGCCATGCAGCTGCAAGCCGAAGCAGGCCAAGGATTGCCAGCAAACCAAGAGAGGCTGGAAGAAGAGAGAAGGATCTTTCCCTGCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000437113.2
CDS CCA 90 bp GCAGGGAAAGATCCTTCTCTCTTCTTCCAGCCTCTCTTGGTTTGCTaGCAATCCTTGGCCTGCTTCGGCTTGCAGCTGCATGGCTCTGAT +
Preference number: 5 (lower is better)
Translates to: AGKDPSLFFQPLLVC*QSLACFGLQLHGSD
Trigger: ATCAGAGCCATGCAGCTGCAAGCCGAAGCAGGCCAAGGATTGCCAGCAAACCAAGAGAGGCTGGAAGAAGAGAGAAGGATCTTTCCCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000437113.2
CDS GCA 90 bp TCTCTCTTCTTCCAGCCTCTCTTGGTTTGCTGGCAATCCTTGGCCTaGTTCGGCTTGCAGCTGCATGGCTCTGATCTCTGTCTTAGCTGT +
Preference number: 5 (lower is better)
Translates to: SLFFQPLLVCWQSLA*FGLQLHGSDLCLSC
Trigger: ACAGCTAAGACAGAGATCAGAGCCATGCAGCTGCAAGCCGAAGCAGGCCAAGGATTGCCAGCAAACCAAGAGAGGCTGGAAGAAGAGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000437113.2
CDS CCA 90 bp ATCCTTCTCTCTTCTTCCAGCCTCTCTTGGTTTGCTGGCAATCCTTaGCCTGCTTCGGCTTGCAGCTGCATGGCTCTGATCTCTGTCTTA +
Preference number: 5 (lower is better)
Translates to: ILLSSSSLSWFAGNP*PASACSCMALISVL
Trigger: TAAGACAGAGATCAGAGCCATGCAGCTGCAAGCCGAAGCAGGCCAAGGATTGCCAGCAAACCAAGAGAGGCTGGAAGAAGAGAGAAGGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000437113.2
CDS CCA 90 bp TCTGTGTGCTCTTTGAATGTGAGATGGAGAGGAGGAACTTGGTATTaGCAGCCAGAAAGTTCTGGGGTCAAGGTCCTGAGATCAAGGGCC +
Preference number: 5 (lower is better)
Translates to: SVCSLNVRWRGGTWY*QPESSGVKVLRSRA
Trigger: GGCCCTTGATCTCAGGACCTTGACCCCAGAACTTTCTGGCTGCCAATACCAAGTTCCTCCTCTCCATCTCACATTCAAAGAGCACACAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000437113.2
CDS GCA 90 bp ATGGCTCTGATCTCTGTCTTAGCTGTTATATGGCATTCTCCGTGTTaGCAGCAGGATGTCCTCTCCTCAGCCACACAGAGACTTGGATCT +
Preference number: 5 (lower is better)
Translates to: MALISVLAVIWHSPC*QQDVLSSATQRLGS
Trigger: AGATCCAAGTCTCTGTGTGGCTGAGGAGAGGACATCCTGCTGGCAACACGGAGAATGCCATATAACAGCTAAGACAGAGATCAGAGCCAT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000437113.2
CDS CCA 72 bp CTTCCTTCAGCCATGTTCCCCCAGGGAGGCTTGGCCTaGCTCAGACTCTCCTTGCGCTCCAGCCCCCGAGGA +
Preference number: 6 (lower is better)
Translates to: LPSAMFPQGGLA*LRLSLRSSPRG
Trigger: TCCTCGGGGGCTGGAGCGCAAGGAGAGTCTGAGCCAGGCCAAGCCTCCCTGGGGGAACATGGCTGAAGGAAG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000437113.2
CDS CAA 90 bp GAGATGTCTGTAGGTCTTCCTTCAGCCATGTTCCCCCAGGGAGGCTaGGCCTGGCTCAGACTCTCCTTGCGCTCCAGCCCCCGAGGAGTT +
Preference number: 6 (lower is better)
Translates to: EMSVGLPSAMFPQGG*AWLRLSLRSSPRGV
Trigger: AACTCCTCGGGGGCTGGAGCGCAAGGAGAGTCTGAGCCAGGCCAAGCCTCCCTGGGGGAACATGGCTGAAGGAAGACCTACAGACATCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000437113.2
CDS GCA 72 bp GACCAGGGGCTGGTGCTGATCTTAGACTGGTCACGGTaGAAAGTCCCCACCCAAACGCGAGAGCTCTGTACG +
Preference number: 6 (lower is better)
Translates to: DQGLVLILDWSR*KVPTQTRELCT
Trigger: CGTACAGAGCTCTCGCGTTTGGGTGGGGACTTTGCACCGTGACCAGTCTAAGATCAGCACCAGCCCCTGGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000437113.2
CDS CAA 90 bp CTCCGTGTTGCCAGCAGGATGTCCTCTCCTCAGCCACACAGAGACTaGGATCTGCTGCTTCTGAACACAGGCTCCCACCCAGGGGAGATG +
Preference number: 6 (lower is better)
Translates to: LRVASRMSSPQPHRD*DLLLLNTGSHPGEM
Trigger: CATCTCCCCTGGGTGGGAGCCTGTGTTCAGAAGCAGCAGATCCAAGTCTCTGTGTGGCTGAGGAGAGGACATCCTGCTGGCAACACGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000437113.2
CDS CAA 72 bp GCCAGCAGGATGTCCTCTCCTCAGCCACACAGAGACTaGGATCTGCTGCTTCTGAACACAGGCTCCCACCCA +
Preference number: 6 (lower is better)
Translates to: ASRMSSPQPHRD*DLLLLNTGSHP
Trigger: TGGGTGGGAGCCTGTGTTCAGAAGCAGCAGATCCAAGTCTCTGTGTGGCTGAGGAGAGGACATCCTGCTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000437113.2
CDS GCA 72 bp TTCCAGCCTCTCTTGGTTTGCTGGCAATCCTTGGCCTaGTTCGGCTTGCAGCTGCATGGCTCTGATCTCTGT +
Preference number: 6 (lower is better)
Translates to: FQPLLVCWQSLA*FGLQLHGSDLC
Trigger: ACAGAGATCAGAGCCATGCAGCTGCAAGCCGAAGCAGGCCAAGGATTGCCAGCAAACCAAGAGAGGCTGGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000437113.2
CDS CCA 72 bp TCTTCTTCCAGCCTCTCTTGGTTTGCTGGCAATCCTTaGCCTGCTTCGGCTTGCAGCTGCATGGCTCTGATC +
Preference number: 6 (lower is better)
Translates to: SSSSLSWFAGNP*PASACSCMALI
Trigger: GATCAGAGCCATGCAGCTGCAAGCCGAAGCAGGCCAAGGATTGCCAGCAAACCAAGAGAGGCTGGAAGAAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000437113.2
CDS CAA 90 bp ATCAGCAGGGAAAGATCCTTCTCTCTTCTTCCAGCCTCTCTTGGTTaGCTGGCAATCCTTGGCCTGCTTCGGCTTGCAGCTGCATGGCTC +
Preference number: 6 (lower is better)
Translates to: ISRERSFSLLPASLG*LAILGLLRLAAAWL
Trigger: GAGCCATGCAGCTGCAAGCCGAAGCAGGCCAAGGATTGCCAGCAAACCAAGAGAGGCTGGAAGAAGAGAGAAGGATCTTTCCCTGCTGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000437113.2
CDS CCA 72 bp GATCCTTCTCTCTTCTTCCAGCCTCTCTTGGTTTGCTaGCAATCCTTGGCCTGCTTCGGCTTGCAGCTGCAT +
Preference number: 6 (lower is better)
Translates to: DPSLFFQPLLVC*QSLACFGLQLH
Trigger: ATGCAGCTGCAAGCCGAAGCAGGCCAAGGATTGCCAGCAAACCAAGAGAGGCTGGAAGAAGAGAGAAGGATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000437113.2
CDS CCA 72 bp CAGGGAAAGATCCTTCTCTCTTCTTCCAGCCTCTCTTaGTTTGCTGGCAATCCTTGGCCTGCTTCGGCTTGC +
Preference number: 6 (lower is better)
Translates to: QGKILLSSSSLS*FAGNPWPASAC
Trigger: GCAAGCCGAAGCAGGCCAAGGATTGCCAGCAAACCAAGAGAGGCTGGAAGAAGAGAGAAGGATCTTTCCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000437113.2
CDS CAA 72 bp CTCTTGGTTTGCTGGCAATCCTTGGCCTGCTTCGGCTaGCAGCTGCATGGCTCTGATCTCTGTCTTAGCTGT +
Preference number: 6 (lower is better)
Translates to: LLVCWQSLACFG*QLHGSDLCLSC
Trigger: ACAGCTAAGACAGAGATCAGAGCCATGCAGCTGCAAGCCGAAGCAGGCCAAGGATTGCCAGCAAACCAAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000437113.2
CDS CAA 72 bp GCAGGGAAAGATCCTTCTCTCTTCTTCCAGCCTCTCTaGGTTTGCTGGCAATCCTTGGCCTGCTTCGGCTTG +
Preference number: 6 (lower is better)
Translates to: AGKDPSLFFQPL*VCWQSLACFGL
Trigger: CAAGCCGAAGCAGGCCAAGGATTGCCAGCAAACCAAGAGAGGCTGGAAGAAGAGAGAAGGATCTTTCCCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000437113.2
CDS GCA 72 bp AAAGATCCTTCTCTCTTCTTCCAGCCTCTCTTGGTTTaGTGGCAATCCTTGGCCTGCTTCGGCTTGCAGCTG +
Preference number: 6 (lower is better)
Translates to: KDPSLFFQPLLV*WQSLACFGLQL
Trigger: CAGCTGCAAGCCGAAGCAGGCCAAGGATTGCCAGCAAACCAAGAGAGGCTGGAAGAAGAGAGAAGGATCTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000437113.2
CDS CAA 72 bp GAAAGATCCTTCTCTCTTCTTCCAGCCTCTCTTGGTTaGCTGGCAATCCTTGGCCTGCTTCGGCTTGCAGCT +
Preference number: 6 (lower is better)
Translates to: ERSFSLLPASLG*LAILGLLRLAA
Trigger: AGCTGCAAGCCGAAGCAGGCCAAGGATTGCCAGCAAACCAAGAGAGGCTGGAAGAAGAGAGAAGGATCTTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000437113.2
CDS CAA 90 bp CATGGCTCTGATCTCTGTCTTAGCTGTTATATGGCATTCTCCGTGTaGCCAGCAGGATGTCCTCTCCTCAGCCACACAGAGACTTGGATC +
Preference number: 6 (lower is better)
Translates to: HGSDLCLSCYMAFSV*PAGCPLLSHTETWI
Trigger: GATCCAAGTCTCTGTGTGGCTGAGGAGAGGACATCCTGCTGGCAACACGGAGAATGCCATATAACAGCTAAGACAGAGATCAGAGCCATG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000437113.2
CDS CAA 90 bp CTCTGTGTGCTCTTTGAATGTGAGATGGAGAGGAGGAACTTGGTATaGGCAGCCAGAAAGTTCTGGGGTCAAGGTCCTGAGATCAAGGGC +
Preference number: 6 (lower is better)
Translates to: LCVLFECEMERRNLV*AARKFWGQGPEIKG
Trigger: GCCCTTGATCTCAGGACCTTGACCCCAGAACTTTCTGGCTGCCAATACCAAGTTCCTCCTCTCCATCTCACATTCAAAGAGCACACAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000437113.2
CDS CAA 72 bp GATCTCTGTCTTAGCTGTTATATGGCATTCTCCGTGTaGCCAGCAGGATGTCCTCTCCTCAGCCACACAGAG +
Preference number: 6 (lower is better)
Translates to: DLCLSCYMAFSV*PAGCPLLSHTE
Trigger: CTCTGTGTGGCTGAGGAGAGGACATCCTGCTGGCAACACGGAGAATGCCATATAACAGCTAAGACAGAGATC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000437113.2
CDS CAA 72 bp CTCTTTGAATGTGAGATGGAGAGGAGGAACTTGGTATaGGCAGCCAGAAAGTTCTGGGGTCAAGGTCCTGAG +
Preference number: 6 (lower is better)
Translates to: LFECEMERRNLV*AARKFWGQGPE
Trigger: CTCAGGACCTTGACCCCAGAACTTTCTGGCTGCCAATACCAAGTTCCTCCTCTCCATCTCACATTCAAAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000437113.2
CDS CAA 72 bp TGTGTGCTCTTTGAATGTGAGATGGAGAGGAGGAACTaGGTATTGGCAGCCAGAAAGTTCTGGGGTCAAGGT +
Preference number: 6 (lower is better)
Translates to: CVLFECEMERRN*VLAARKFWGQG
Trigger: ACCTTGACCCCAGAACTTTCTGGCTGCCAATACCAAGTTCCTCCTCTCCATCTCACATTCAAAGAGCACACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000437113.2