Pregenerated sensors for LINC01035 (Homo sapiens)
Ensembl gene IDs: ENSG00000226486Ensembl transcript IDs: ENST00000445072.1, ENST00000658142.1
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CATGCAGTAAGCAGAGAGTACTCTGGGCCAACAGCCCTTGCTTTGTaGGGCATGGTTCCACGACAGGAGAGAGAAGCCAAGAGGACCCCA | + |
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Preference number: 5 (lower is better) Translates to: HAVSREYSGPTALAL*GMVPRQEREAKRTP Trigger: TGGGGTCCTCTTGGCTTCTCTCTCCTGTCGTGGAACCATGCCTCACAAAGCAAGGGCTGTTGGCCCAGAGTACTCTCTGCTTACTGCATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000445072.1 ENST00000658142.1 |
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| CDS GCA 90 bp | CTTCTTTCATGCAGTAAGCAGAGAGTACTCTGGGCCAACAGCCCTTaGTTTGTGAGGCATGGTTCCACGACAGGAGAGAGAAGCCAAGAG | + |
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Preference number: 5 (lower is better) Translates to: LLSCSKQRVLWANSP*FVRHGSTTGERSQE Trigger: CTCTTGGCTTCTCTCTCCTGTCGTGGAACCATGCCTCACAAAGCAAGGGCTGTTGGCCCAGAGTACTCTCTGCTTACTGCATGAAAGAAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000445072.1 ENST00000658142.1 |
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| CDS TCA 90 bp | CAGTCTGTGGTTGAAGAGTCCCAAAGAGTCCTGGAGTCCCAAAGCTaGAGAACTTGGAGTCCAATGTTGAGGTTAGGAAGCATCCAGCAT | + |
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Preference number: 5 (lower is better) Translates to: QSVVEESQRVLESQS*RTWSPMLRLGSIQH Trigger: ATGCTGGATGCTTCCTAACCTCAACATTGGACTCCAAGTTCTTCAGCTTTGGGACTCCAGGACTCTTTGGGACTCTTCAACCACAGACTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445072.1 |
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| CDS TCA 90 bp | TCTGCCCTTAGAAGCTTGTTGCTGAGGCTATGTTTCAGGGGAGTATaGTGGAGAGCTATGGGCTCCTTTCATTCATCCAGCCTCATGCAT | + |
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Preference number: 5 (lower is better) Translates to: SALRSLLLRLCFRGV*WRAMGSFHSSSLMH Trigger: ATGCATGAGGCTGGATGAATGAAAGGAGCCCATAGCTCTCCATCATACTCCCCTGAAACATAGCCTCAGCAACAAGCTTCTAAGGGCAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000445072.1 ENST00000658142.1 |
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| CDS TCA 90 bp | TTCTTATTTATCTTCACCAAAGATGGCTTTGTCATGATCACAAGGTaGAGTCCCACAATAGGCCGTCTGCAAGCTGAGGAGCAAGAAAGC | + |
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Preference number: 5 (lower is better) Translates to: FLFIFTKDGFVMITR*SPTIGRLQAEEQES Trigger: GCTTTCTTGCTCCTCAGCTTGCAGACGGCCTATTGTGGGACTTCACCTTGTGATCATGACAAAGCCATCTTTGGTGAAGATAAATAAGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658142.1 |
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| CDS TCA 90 bp | TTGGCTTTCTATCGATGTCACCCCGGTTATTTGTTAATTACACATTaGAGTCAGCTGCACATCTACCTTGGAAGACATTTACGTAAAAAG | + |
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Preference number: 5 (lower is better) Translates to: LAFYRCHPGYLLITH*SQLHIYLGRHLRKK Trigger: CTTTTTACGTAAATGTCTTCCAAGGTAGATGTGCAGCTGACTTCAATGTGTAATTAACAAATAACCGGGGTGACATCGATAGAAAGCCAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000658142.1 |
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| CDS CCA 72 bp | AGTACTCTGGGCCAACAGCCCTTGCTTTGTGAGGCATaGTTCCACGACAGGAGAGAGAAGCCAAGAGGACCC | + |
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Preference number: 6 (lower is better) Translates to: STLGQQPLLCEA*FHDRREKPRGP Trigger: GGGTCCTCTTGGCTTCTCTCTCCTGTCGTGGAACCATGCCTCACAAAGCAAGGGCTGTTGGCCCAGAGTACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000445072.1 ENST00000658142.1 |
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| CDS GCA 72 bp | TGCAGTAAGCAGAGAGTACTCTGGGCCAACAGCCCTTaGTTTGTGAGGCATGGTTCCACGACAGGAGAGAGA | + |
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Preference number: 6 (lower is better) Translates to: CSKQRVLWANSP*FVRHGSTTGER Trigger: TCTCTCTCCTGTCGTGGAACCATGCCTCACAAAGCAAGGGCTGTTGGCCCAGAGTACTCTCTGCTTACTGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000445072.1 ENST00000658142.1 |
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| CDS CCA 72 bp | GAGGTTCTTCTTTCATGCAGTAAGCAGAGAGTACTCTaGGCCAACAGCCCTTGCTTTGTGAGGCATGGTTCC | + |
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Preference number: 6 (lower is better) Translates to: EVLLSCSKQRVL*ANSPCFVRHGS Trigger: GGAACCATGCCTCACAAAGCAAGGGCTGTTGGCCCAGAGTACTCTCTGCTTACTGCATGAAAGAAGAACCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000445072.1 ENST00000658142.1 |
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| CDS CCA 72 bp | GCCTTCAGTCTGTGGTTGAAGAGTCCCAAAGAGTCCTaGAGTCCCAAAGCTGAAGAACTTGGAGTCCAATGT | + |
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Preference number: 6 (lower is better) Translates to: AFSLWLKSPKES*SPKAEELGVQC Trigger: ACATTGGACTCCAAGTTCTTCAGCTTTGGGACTCCAGGACTCTTTGGGACTCTTCAACCACAGACTGAAGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445072.1 |
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| CDS TCA 72 bp | GTTGAAGAGTCCCAAAGAGTCCTGGAGTCCCAAAGCTaGAGAACTTGGAGTCCAATGTTGAGGTTAGGAAGC | + |
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Preference number: 6 (lower is better) Translates to: VEESQRVLESQS*RTWSPMLRLGS Trigger: GCTTCCTAACCTCAACATTGGACTCCAAGTTCTTCAGCTTTGGGACTCCAGGACTCTTTGGGACTCTTCAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445072.1 |
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| CDS TCA 72 bp | AGAAGCTTGTTGCTGAGGCTATGTTTCAGGGGAGTATaGTGGAGAGCTATGGGCTCCTTTCATTCATCCAGC | + |
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Preference number: 6 (lower is better) Translates to: RSLLLRLCFRGV*WRAMGSFHSSS Trigger: GCTGGATGAATGAAAGGAGCCCATAGCTCTCCATCATACTCCCCTGAAACATAGCCTCAGCAACAAGCTTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000445072.1 ENST00000658142.1 |
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| CDS TCA 72 bp | ATCTTCACCAAAGATGGCTTTGTCATGATCACAAGGTaGAGTCCCACAATAGGCCGTCTGCAAGCTGAGGAG | + |
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Preference number: 6 (lower is better) Translates to: IFTKDGFVMITR*SPTIGRLQAEE Trigger: CTCCTCAGCTTGCAGACGGCCTATTGTGGGACTTCACCTTGTGATCATGACAAAGCCATCTTTGGTGAAGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658142.1 |
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| CDS CCA 72 bp | TTGGAGTCCAATGTTGAGGTTAGGAAGCATCCAGCATaGGAGAAAGATGTAGGCTGGAAGACCCAGTTTACT | + |
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Preference number: 6 (lower is better) Translates to: LESNVEVRKHPA*EKDVGWKTQFT Trigger: AGTAAACTGGGTCTTCCAGCCTACATCTTTCTCCCATGCTGGATGCTTCCTAACCTCAACATTGGACTCCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445072.1 |
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| CDS TCA 72 bp | TATCGATGTCACCCCGGTTATTTGTTAATTACACATTaGAGTCAGCTGCACATCTACCTTGGAAGACATTTA | + |
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Preference number: 6 (lower is better) Translates to: YRCHPGYLLITH*SQLHIYLGRHL Trigger: TAAATGTCTTCCAAGGTAGATGTGCAGCTGACTTCAATGTGTAATTAACAAATAACCGGGGTGACATCGATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000658142.1 |
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