Pregenerated sensors for LINC01031 (Homo sapiens)
Ensembl gene IDs: ENSG00000232077Ensembl transcript IDs: ENST00000420807.1, ENST00000657700.1, ENST00000660235.1, ENST00000660270.1, ENST00000668188.1
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AAGCATGGTGCAAGGATAGCACTGGGTACACTAGAGCCAGGTCATTaGCAGGTCTTACGGCTCATGGTGCAGGGTATGGATTTTATTCTA | + |
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Preference number: 5 (lower is better) Translates to: KHGARIALGTLEPGH*QVLRLMVQGMDFIL Trigger: TAGAATAAAATCCATACCCTGCACCATGAGCCGTAAGACCTGGCAATGACCTGGCTCTAGTGTACCCAGTGCTATCCTTGCACCATGCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000657700.1 ENST00000660235.1 ENST00000668188.1 |
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| CDS GCA 90 bp | CAGTCAGCCCTCTTCCGTTTTCCCTGCTTGAAATACATAGGGCAGTaGTCTGGTAGGCAATTAATTGACCCAGACTCCCTTGCATTTTCT | + |
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Preference number: 5 (lower is better) Translates to: QSALFRFPCLKYIGQ*SGRQLIDPDSLAFS Trigger: AGAAAATGCAAGGGAGTCTGGGTCAATTAATTGCCTACCAGAGCACTGCCCTATGTATTTCAAGCAGGGAAAACGGAAGAGGGCTGACTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000660235.1 |
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| CDS CCA 90 bp | ATCCTGGGAAATGTCCTGTGTCTCCGGAGTGATTTCGCAGCTCTTTaGAATACCCCTAAAGCAGCATACTTGGTGATGTTGGTGATAAGA | + |
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Preference number: 5 (lower is better) Translates to: ILGNVLCLRSDFAAL*NTPKAAYLVMLVIR Trigger: TCTTATCACCAACATCACCAAGTATGCTGCTTTAGGGGTATTCCAAAGAGCTGCGAAATCACTCCGGAGACACAGGACATTTCCCAGGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000660270.1 |
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| CDS CCA 90 bp | TTTCCCATCTACTGTACCTCTCTAGAAACACCTCCTGACACACTGTaGATCTCAGCCACTTCAGTGAAGTTGTTACTAGCTCTCTGGAAT | + |
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Preference number: 5 (lower is better) Translates to: FPIYCTSLETPPDTL*ISATSVKLLLALWN Trigger: ATTCCAGAGAGCTAGTAACAACTTCACTGAAGTGGCTGAGATCCACAGTGTGTCAGGAGGTGTTTCTAGAGAGGTACAGTAGATGGGAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000420807.1 ENST00000660270.1 |
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| CDS CCA 90 bp | AGTTCTACACAAGCAAATGTGAATAGAAGTGACACGAACAACCTCTaGGTCACACCCACAGGAAGAAGCTTGTTCTTCATTCCCTCTTTC | + |
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Preference number: 5 (lower is better) Translates to: SSTQANVNRSDTNNL*VTPTGRSLFFIPSF Trigger: GAAAGAGGGAATGAAGAACAAGCTTCTTCCTGTGGGTGTGACCCAGAGGTTGTTCGTGTCACTTCTATTCACATTTGCTTGTGTAGAACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000657700.1 ENST00000660235.1 ENST00000668188.1 |
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| CDS TCA 90 bp | GTGGCTCCTTTGACCCTCCACAAGACTGTCTTCTCTTCTGTATTCTaGTTTTTAAGCAGCAAGCCAACCAGACAGAATAGGAAATACATG | + |
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Preference number: 5 (lower is better) Translates to: VAPLTLHKTVFSSVF*FLSSKPTRQNRKYM Trigger: CATGTATTTCCTATTCTGTCTGGTTGGCTTGCTGCTTAAAAATCAGAATACAGAAGAGAAGACAGTCTTGTGGAGGGTCAAAGGAGCCAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000420807.1 ENST00000660235.1 ENST00000660270.1 ENST00000668188.1 |
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| CDS TCA 90 bp | AGTTACAGATTACATGCTAATGGTGAGAGAGGGAAGATGAAAAGATaGCACCATCAATTTCAGGGCATAAATCCTCCCCGCTATAAACTA | + |
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Preference number: 5 (lower is better) Translates to: SYRLHANGERGKMKR*HHQFQGINPPRYKL Trigger: TAGTTTATAGCGGGGAGGATTTATGCCCTGAAATTGATGGTGTCATCTTTTCATCTTCCCTCTCTCACCATTAGCATGTAATCTGTAACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000657700.1 ENST00000660235.1 ENST00000668188.1 |
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| CDS TCA 90 bp | CAGGTGCTTTCATATATATCACTTTCATCAGACCCATTTGATAAATaGGGCAGGAGGTTAAGGAGCTTACTGAATTCATGTCCTCTCATT | + |
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Preference number: 5 (lower is better) Translates to: QVLSYISLSSDPFDK*GRRLRSLLNSCPLI Trigger: AATGAGAGGACATGAATTCAGTAAGCTCCTTAACCTCCTGCCTCATTTATCAAATGGGTCTGATGAAAGTGATATATATGAAAGCACCTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000420807.1 ENST00000660270.1 |
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| CDS GCA 90 bp | CACCATCAATTTCAGGGCATAAATCCTCCCCGCTATAAACTATGTTaGCCAATCTTTCTTGAAGTTAAGTATGATTGTGTAAGTTCTACA | + |
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Preference number: 5 (lower is better) Translates to: HHQFQGINPPRYKLC*PIFLEVKYDCVSST Trigger: TGTAGAACTTACACAATCATACTTAACTTCAAGAAAGATTGGGCAACATAGTTTATAGCGGGGAGGATTTATGCCCTGAAATTGATGGTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000657700.1 ENST00000660235.1 ENST00000668188.1 |
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| CDS GCA 72 bp | GCAAGGATAGCACTGGGTACACTAGAGCCAGGTCATTaGCAGGTCTTACGGCTCATGGTGCAGGGTATGGAT | + |
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Preference number: 6 (lower is better) Translates to: ARIALGTLEPGH*QVLRLMVQGMD Trigger: ATCCATACCCTGCACCATGAGCCGTAAGACCTGGCAATGACCTGGCTCTAGTGTACCCAGTGCTATCCTTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000657700.1 ENST00000660235.1 ENST00000668188.1 |
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| CDS CAA 72 bp | TGCAAGGATAGCACTGGGTACACTAGAGCCAGGTCATaGCCAGGTCTTACGGCTCATGGTGCAGGGTATGGA | + |
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Preference number: 6 (lower is better) Translates to: CKDSTGYTRARS*PGLTAHGAGYG Trigger: TCCATACCCTGCACCATGAGCCGTAAGACCTGGCAATGACCTGGCTCTAGTGTACCCAGTGCTATCCTTGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000657700.1 ENST00000660235.1 ENST00000668188.1 |
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| CDS CCA 72 bp | AGGTGGAGGCCAGAGAAGCCAGAACATAGTGACTGGTaGAAAGCATGGTGCAAGGATAGCACTGGGTACACT | + |
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Preference number: 6 (lower is better) Translates to: RWRPEKPEHSDW*KAWCKDSTGYT Trigger: AGTGTACCCAGTGCTATCCTTGCACCATGCTTTCCACCAGTCACTATGTTCTGGCTTCTCTGGCCTCCACCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000657700.1 ENST00000660235.1 ENST00000668188.1 |
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| CDS CCA 72 bp | AAAAGGTGGAGGCCAGAGAAGCCAGAACATAGTGACTaGTGGAAAGCATGGTGCAAGGATAGCACTGGGTAC | + |
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Preference number: 6 (lower is better) Translates to: KRWRPEKPEHSD*WKAWCKDSTGY Trigger: GTACCCAGTGCTATCCTTGCACCATGCTTTCCACCAGTCACTATGTTCTGGCTTCTCTGGCCTCCACCTTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000657700.1 ENST00000660235.1 ENST00000668188.1 |
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| CDS CCA 72 bp | CTCTGGAATCTTCAGGCCTCTACTCTTTCACCTTACTaGCCTCGTCCAATCCTGGGAAATGTCCTGTGTCTC | + |
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Preference number: 6 (lower is better) Translates to: LWNLQASTLSPY*PRPILGNVLCL Trigger: GAGACACAGGACATTTCCCAGGATTGGACGAGGCCAGTAAGGTGAAAGAGTAGAGGCCTGAAGATTCCAGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000660270.1 |
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| CDS CAA 90 bp | AAAGCATGGTGCAAGGATAGCACTGGGTACACTAGAGCCAGGTCATaGCCAGGTCTTACGGCTCATGGTGCAGGGTATGGATTTTATTCT | + |
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Preference number: 6 (lower is better) Translates to: KAWCKDSTGYTRARS*PGLTAHGAGYGFYS Trigger: AGAATAAAATCCATACCCTGCACCATGAGCCGTAAGACCTGGCAATGACCTGGCTCTAGTGTACCCAGTGCTATCCTTGCACCATGCTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000657700.1 ENST00000660235.1 ENST00000668188.1 |
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| CDS CAA 72 bp | CCTGACACACTGTGGATCTCAGCCACTTCAGTGAAGTaGTTACTAGCTCTCTGGAATCTTCAGGCCTCTACT | + |
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Preference number: 6 (lower is better) Translates to: PDTLWISATSVK*LLALWNLQAST Trigger: AGTAGAGGCCTGAAGATTCCAGAGAGCTAGTAACAACTTCACTGAAGTGGCTGAGATCCACAGTGTGTCAGG 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000420807.1 ENST00000660270.1 |
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| CDS CAA 90 bp | GAAACACCTCCTGACACACTGTGGATCTCAGCCACTTCAGTGAAGTaGTTACTAGCTCTCTGGAATCTTCAGGCCTCTACTCTTTCACCT | + |
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Preference number: 6 (lower is better) Translates to: ETPPDTLWISATSVK*LLALWNLQASTLSP Trigger: AGGTGAAAGAGTAGAGGCCTGAAGATTCCAGAGAGCTAGTAACAACTTCACTGAAGTGGCTGAGATCCACAGTGTGTCAGGAGGTGTTTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000420807.1 ENST00000660270.1 |
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| CDS GCA 72 bp | CTCTTCCGTTTTCCCTGCTTGAAATACATAGGGCAGTaGTCTGGTAGGCAATTAATTGACCCAGACTCCCTT | + |
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Preference number: 6 (lower is better) Translates to: LFRFPCLKYIGQ*SGRQLIDPDSL Trigger: AAGGGAGTCTGGGTCAATTAATTGCCTACCAGAGCACTGCCCTATGTATTTCAAGCAGGGAAAACGGAAGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000660235.1 |
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| CDS CCA 72 bp | AATGTCCTGTGTCTCCGGAGTGATTTCGCAGCTCTTTaGAATACCCCTAAAGCAGCATACTTGGTGATGTTG | + |
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Preference number: 6 (lower is better) Translates to: NVLCLRSDFAAL*NTPKAAYLVML Trigger: CAACATCACCAAGTATGCTGCTTTAGGGGTATTCCAAAGAGCTGCGAAATCACTCCGGAGACACAGGACATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000660270.1 |
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| CDS CCA 72 bp | TACTGTACCTCTCTAGAAACACCTCCTGACACACTGTaGATCTCAGCCACTTCAGTGAAGTTGTTACTAGCT | + |
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Preference number: 6 (lower is better) Translates to: YCTSLETPPDTL*ISATSVKLLLA Trigger: AGCTAGTAACAACTTCACTGAAGTGGCTGAGATCCACAGTGTGTCAGGAGGTGTTTCTAGAGAGGTACAGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000420807.1 ENST00000660270.1 |
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| CDS CCA 72 bp | TACAGGATGAAGAATAGCAGGGATAAGGGCCTGAGGTaGGGAAAGGATCAATGTGTTCTAGAAAAAGGTGGA | + |
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Preference number: 6 (lower is better) Translates to: YRMKNSRDKGLR*GKDQCVLEKGG Trigger: TCCACCTTTTTCTAGAACACATTGATCCTTTCCCCACCTCAGGCCCTTATCCCTGCTATTCTTCATCCTGTA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000657700.1 ENST00000660235.1 ENST00000668188.1 |
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| CDS CCA 72 bp | CAAGCAAATGTGAATAGAAGTGACACGAACAACCTCTaGGTCACACCCACAGGAAGAAGCTTGTTCTTCATT | + |
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Preference number: 6 (lower is better) Translates to: QANVNRSDTNNL*VTPTGRSLFFI Trigger: AATGAAGAACAAGCTTCTTCCTGTGGGTGTGACCCAGAGGTTGTTCGTGTCACTTCTATTCACATTTGCTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000657700.1 ENST00000660235.1 ENST00000668188.1 |
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| CDS CAA 72 bp | CACCAATTCCGGACACAATCCCACACGTATACCTCCTaGGTTTACTTCCATTATCCTGTGATGAAAGGAAAA | + |
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Preference number: 6 (lower is better) Translates to: HQFRTQSHTYTS*VYFHYPVMKGK Trigger: TTTTCCTTTCATCACAGGATAATGGAAGTAAACCAAGGAGGTATACGTGTGGGATTGTGTCCGGAATTGGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000420807.1 |
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| CDS GCA 72 bp | TTTCAGGGCATAAATCCTCCCCGCTATAAACTATGTTaGCCAATCTTTCTTGAAGTTAAGTATGATTGTGTA | + |
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Preference number: 6 (lower is better) Translates to: FQGINPPRYKLC*PIFLEVKYDCV Trigger: TACACAATCATACTTAACTTCAAGAAAGATTGGGCAACATAGTTTATAGCGGGGAGGATTTATGCCCTGAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000657700.1 ENST00000660235.1 ENST00000668188.1 |
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