Pregenerated sensors for LINC01030 (Homo sapiens)
Ensembl gene IDs: ENSG00000253799Ensembl transcript IDs: ENST00000517505.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TTTCTAGCGGCAGTCTTTGCTTATGCCAGGAAGAGTGCCCAAGGTTaGAAAAGCCTTGAGAGTGGACGGGTAAATGAGGTGGAAACTTCA | + |
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Preference number: 5 (lower is better) Translates to: FLAAVFAYARKSAQG*KSLESGRVNEVETS Trigger: TGAAGTTTCCACCTCATTTACCCGTCCACTCTCAAGGCTTTTTCAACCTTGGGCACTCTTCCTGGCATAAGCAAAGACTGCCGCTAGAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000517505.1 |
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| CDS TCA 90 bp | AAAAATATTCCAACCACAAGCATCACTGAGATCACCATTGACTCTTaGATGGATTCAGTGTATTATGTCACCACATCCTGGACAAGGAAT | + |
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Preference number: 5 (lower is better) Translates to: KNIPTTSITEITIDS*MDSVYYVTTSWTRN Trigger: ATTCCTTGTCCAGGATGTGGTGACATAATACACTGAATCCATTCAAGAGTCAATGGTGATCTCAGTGATGCTTGTGGTTGGAATATTTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000517505.1 |
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| CDS CAA 90 bp | CCCTCGCGGCGAGTGTTACAGTTCTTAAAGATGGTGTGTCCGCAGTaGGACGTGCCCGGAGTTTCTTCCTTCTGGTGGGTTTGTGGTCTC | + |
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Preference number: 6 (lower is better) Translates to: PSRRVLQFLKMVCPQ*DVPGVSSFWWVCGL Trigger: GAGACCACAAACCCACCAGAAGGAAGAAACTCCGGGCACGTCCAACTGCGGACACACCATCTTTAAGAACTGTAACACTCGCCGCGAGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000517505.1 |
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| CDS CCA 72 bp | CCGCAGTTGGACGTGCCCGGAGTTTCTTCCTTCTGGTaGGTTTGTGGTCTCACTGACTTCACGAGTGAAGCT | + |
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Preference number: 6 (lower is better) Translates to: PQLDVPGVSSFW*VCGLTDFTSEA Trigger: AGCTTCACTCGTGAAGTCAGTGAGACCACAAACCCACCAGAAGGAAGAAACTCCGGGCACGTCCAACTGCGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000517505.1 |
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| CDS CCA 72 bp | TGTCCGCAGTTGGACGTGCCCGGAGTTTCTTCCTTCTaGTGGGTTTGTGGTCTCACTGACTTCACGAGTGAA | + |
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Preference number: 6 (lower is better) Translates to: CPQLDVPGVSSF*WVCGLTDFTSE Trigger: TTCACTCGTGAAGTCAGTGAGACCACAAACCCACCAGAAGGAAGAAACTCCGGGCACGTCCAACTGCGGACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000517505.1 |
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| CDS CAA 90 bp | AGCCAGCAGCTACAATATAGTTACGTGTCTGGAATTGCTGGGTTCTaGGTCTCGCTGACTTCAAGAATGAAGCCACAGACCCTCGCGGCG | + |
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Preference number: 6 (lower is better) Translates to: SQQLQYSYVSGIAGF*VSLTSRMKPQTLAA Trigger: CGCCGCGAGGGTCTGTGGCTTCATTCTTGAAGTCAGCGAGACCAAGAACCCAGCAATTCCAGACACGTAACTATATTGTAGCTGCTGGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000517505.1 |
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| CDS CAA 72 bp | CGAGTGTTACAGTTCTTAAAGATGGTGTGTCCGCAGTaGGACGTGCCCGGAGTTTCTTCCTTCTGGTGGGTT | + |
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Preference number: 6 (lower is better) Translates to: RVLQFLKMVCPQ*DVPGVSSFWWV Trigger: AACCCACCAGAAGGAAGAAACTCCGGGCACGTCCAACTGCGGACACACCATCTTTAAGAACTGTAACACTCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000517505.1 |
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| CDS TCA 72 bp | GCAGTCTTTGCTTATGCCAGGAAGAGTGCCCAAGGTTaGAAAAGCCTTGAGAGTGGACGGGTAAATGAGGTG | + |
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Preference number: 6 (lower is better) Translates to: AVFAYARKSAQG*KSLESGRVNEV Trigger: CACCTCATTTACCCGTCCACTCTCAAGGCTTTTTCAACCTTGGGCACTCTTCCTGGCATAAGCAAAGACTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000517505.1 |
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| CDS TCA 72 bp | CCAACCACAAGCATCACTGAGATCACCATTGACTCTTaGATGGATTCAGTGTATTATGTCACCACATCCTGG | + |
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Preference number: 6 (lower is better) Translates to: PTTSITEITIDS*MDSVYYVTTSW Trigger: CCAGGATGTGGTGACATAATACACTGAATCCATTCAAGAGTCAATGGTGATCTCAGTGATGCTTGTGGTTGG 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000517505.1 |
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| CDS CAA 72 bp | ACCACATCCTGGACAAGGAATTTCAAACATGTACAGTaGTATGGCCTTCTCGAAGCCTTATGTTTCTTACAA | + |
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Preference number: 6 (lower is better) Translates to: TTSWTRNFKHVQ*YGLLEALCFLQ Trigger: TTGTAAGAAACATAAGGCTTCGAGAAGGCCATACAACTGTACATGTTTGAAATTCCTTGTCCAGGATGTGGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000517505.1 |
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