Pregenerated sensors for LINC01028 (Homo sapiens)
Ensembl gene IDs: ENSG00000267603Ensembl transcript IDs: ENST00000586373.1, ENST00000588782.1
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TGGTACATTTGGTCTTCGGAAAATCCATCACAGAGTACGAGGCACTaGCAACTGGTTAGGTTCATCCTGCAGTCCCAGCTACTCAAAAGG | + |
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Preference number: 5 (lower is better) Translates to: WYIWSSENPSQSTRH*QLVRFILQSQLLKR Trigger: CCTTTTGAGTAGCTGGGACTGCAGGATGAACCTAACCAGTTGGCAGTGCCTCGTACTCTGTGATGGATTTTCCGAAGACCAAATGTACCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000588782.1 |
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| CDS TCA 90 bp | ATCGAAAGTGAGAAACAGGACTGTTGGCCCTGCATTTCTGATTCCTaGGCCCACCAATTTTTCTTTGCCTGCTCACAGAGCAGAAAGCCA | + |
|
Preference number: 5 (lower is better) Translates to: IESEKQDCWPCISDS*AHQFFFACSQSRKP Trigger: TGGCTTTCTGCTCTGTGAGCAGGCAAAGAAAAATTGGTGGGCTCAGGAATCAGAAATGCAGGGCCAACAGTCCTGTTTCTCACTTTCGAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000586373.1 |
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| CDS GCA 72 bp | TGGTCTTCGGAAAATCCATCACAGAGTACGAGGCACTaGCAACTGGTTAGGTTCATCCTGCAGTCCCAGCTA | + |
|
Preference number: 6 (lower is better) Translates to: WSSENPSQSTRH*QLVRFILQSQL Trigger: TAGCTGGGACTGCAGGATGAACCTAACCAGTTGGCAGTGCCTCGTACTCTGTGATGGATTTTCCGAAGACCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000588782.1 |
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| CDS GCA 72 bp | TGGTCTTCGGAAAATCCATCACAGAGTACGAGGCACTaGCAACTGGTTAGGTTCATCCTACTCACAGGCTTA | + |
|
Preference number: 6 (lower is better) Translates to: WSSENPSQSTRH*QLVRFILLTGL Trigger: TAAGCCTGTGAGTAGGATGAACCTAACCAGTTGGCAGTGCCTCGTACTCTGTGATGGATTTTCCGAAGACCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000586373.1 |
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| CDS CCA 72 bp | AACCCTGTCCTTCCACTTGAACCAATTTTCGCAAAATaGAATCTAGTGGAAACACACACACACACACACACG | + |
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Preference number: 6 (lower is better) Translates to: NPVLPLEPIFAK*NLVETHTHTHT Trigger: CGTGTGTGTGTGTGTGTGTGTTTCCACTAGATTCCATTTTGCGAAAATTGGTTCAAGTGGAAGGACAGGGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000586373.1 |
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