Pregenerated sensors for LINC01023 (Homo sapiens)
Ensembl gene IDs: ENSG00000272523Ensembl transcript IDs: ENST00000606054.1
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CAGCGGGAAGCAGCATCGAGGGCGACCCAGGGCCAGCACGGGAAATaGCAGGGACCGCGTCAGCCGAGCCTGCTGGAACCCCGCTCCTCG | + |
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Preference number: 5 (lower is better) Translates to: QREAASRATQGQHGK*QGPRQPSLLEPRSS Trigger: CGAGGAGCGGGGTTCCAGCAGGCTCGGCTGACGCGGTCCCTGGCATTTCCCGTGCTGGCCCTGGGTCGCCCTCGATGCTGCTTCCCGCTG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000606054.1 |
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| CDS TCA 90 bp | CGAGCCTGCTGGAACCCCGCTCCTCGCTGCAGACGCCGTTCCGCCTaGGGACAGTACTCGGGCATGGGGAGTCAGGTGCCCGCCACAGGA | + |
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Preference number: 5 (lower is better) Translates to: RACWNPAPRCRRRSA*GQYSGMGSQVPATG Trigger: TCCTGTGGCGGGCACCTGACTCCCCATGCCCGAGTACTGTCCTCAGGCGGAACGGCGTCTGCAGCGAGGAGCGGGGTTCCAGCAGGCTCG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000606054.1 |
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| CDS CCA 90 bp | CTCCTCGCTGCAGACGCCGTTCCGCCTGAGGACAGTACTCGGGCATaGGGAGTCAGGTGCCCGCCACAGGAACGCAAGAGACCGCGCCGG | + |
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Preference number: 5 (lower is better) Translates to: LLAADAVPPEDSTRA*GVRCPPQERKRPRR Trigger: CCGGCGCGGTCTCTTGCGTTCCTGTGGCGGGCACCTGACTCCCCATGCCCGAGTACTGTCCTCAGGCGGAACGGCGTCTGCAGCGAGGAG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000606054.1 |
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| CDS GCA 90 bp | GACGCCGTTCCGCCTGAGGACAGTACTCGGGCATGGGGAGTCAGGTaGCCGCCACAGGAACGCAAGAGACCGCGCCGGACCAGCGAAAAA | + |
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Preference number: 5 (lower is better) Translates to: DAVPPEDSTRAWGVR*PPQERKRPRRTSEK Trigger: TTTTTCGCTGGTCCGGCGCGGTCTCTTGCGTTCCTGTGGCGGGCACCTGACTCCCCATGCCCGAGTACTGTCCTCAGGCGGAACGGCGTC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000606054.1 |
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| CDS GCA 72 bp | GCAGCATCGAGGGCGACCCAGGGCCAGCACGGGAAATaGCAGGGACCGCGTCAGCCGAGCCTGCTGGAACCC | + |
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Preference number: 6 (lower is better) Translates to: AASRATQGQHGK*QGPRQPSLLEP Trigger: GGGTTCCAGCAGGCTCGGCTGACGCGGTCCCTGGCATTTCCCGTGCTGGCCCTGGGTCGCCCTCGATGCTGC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000606054.1 |
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| CDS CCA 72 bp | ACGGGAAATGCCAGGGACCGCGTCAGCCGAGCCTGCTaGAACCCCGCTCCTCGCTGCAGACGCCGTTCCGCC | + |
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Preference number: 6 (lower is better) Translates to: TGNARDRVSRAC*NPAPRCRRRSA Trigger: GGCGGAACGGCGTCTGCAGCGAGGAGCGGGGTTCCAGCAGGCTCGGCTGACGCGGTCCCTGGCATTTCCCGT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000606054.1 |
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| CDS GCA 72 bp | CCGCCTGAGGACAGTACTCGGGCATGGGGAGTCAGGTaGCCGCCACAGGAACGCAAGAGACCGCGCCGGACC | + |
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Preference number: 6 (lower is better) Translates to: PPEDSTRAWGVR*PPQERKRPRRT Trigger: GGTCCGGCGCGGTCTCTTGCGTTCCTGTGGCGGGCACCTGACTCCCCATGCCCGAGTACTGTCCTCAGGCGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000606054.1 |
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| CDS GCA 72 bp | AGCACGGGAAATGCCAGGGACCGCGTCAGCCGAGCCTaGTGGAACCCCGCTCCTCGCTGCAGACGCCGTTCC | + |
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Preference number: 6 (lower is better) Translates to: STGNARDRVSRA*WNPAPRCRRRS Trigger: GGAACGGCGTCTGCAGCGAGGAGCGGGGTTCCAGCAGGCTCGGCTGACGCGGTCCCTGGCATTTCCCGTGCT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000606054.1 |
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| CDS TCA 72 bp | TGGAACCCCGCTCCTCGCTGCAGACGCCGTTCCGCCTaGGGACAGTACTCGGGCATGGGGAGTCAGGTGCCC | + |
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Preference number: 6 (lower is better) Translates to: WNPAPRCRRRSA*GQYSGMGSQVP Trigger: GGGCACCTGACTCCCCATGCCCGAGTACTGTCCTCAGGCGGAACGGCGTCTGCAGCGAGGAGCGGGGTTCCA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000606054.1 |
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| CDS TCA 72 bp | GTGGATTCTTCTCCGTTCCCCGCCGGCCGCCCCAGGTaGAGCTCCTTTCCGCCGTCAGAAGGAGGCTCCCAG | + |
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Preference number: 6 (lower is better) Translates to: VDSSPFPAGRPR*SSFPPSEGGSQ Trigger: CTGGGAGCCTCCTTCTGACGGCGGAAAGGAGCTTCACCTGGGGCGGCCGGCGGGGAACGGAGAAGAATCCAC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000606054.1 |
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| CDS CCA 72 bp | GCAGACGCCGTTCCGCCTGAGGACAGTACTCGGGCATaGGGAGTCAGGTGCCCGCCACAGGAACGCAAGAGA | + |
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Preference number: 6 (lower is better) Translates to: ADAVPPEDSTRA*GVRCPPQERKR Trigger: TCTCTTGCGTTCCTGTGGCGGGCACCTGACTCCCCATGCCCGAGTACTGTCCTCAGGCGGAACGGCGTCTGC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000606054.1 |
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