Pregenerated sensors for LINC01007 (Homo sapiens)
Ensembl gene IDs: ENSG00000233123Ensembl transcript IDs: ENST00000434537.1, ENST00000437900.1, ENST00000451953.1
Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GGAAGACAAGGAGCAGGGGATCCCAGGGAGGACCACCGGGCTCACTaGAGGGAAGAGAGTCCTCCCCTAGGAAGGGACACAGCTGAGGAG | + |
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Preference number: 5 (lower is better) Translates to: GRQGAGDPREDHRAH*REESPPLGRDTAEE Trigger: CTCCTCAGCTGTGTCCCTTCCTAGGGGAGGACTCTCTTCCCTCCAGTGAGCCCGGTGGTCCTCCCTGGGATCCCCTGCTCCTTGTCTTCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000434537.1 ENST00000437900.1 |
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| CDS GCA 90 bp | ACTGAGCCATGGGGTGCCCAGACAACTGGTCAAACACGCCTGCCCTaGCCAGCCCAGGTCAATTCATCTGGTCAGTCTACAGGGGATTGG | + |
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Preference number: 5 (lower is better) Translates to: TEPWGAQTTGQTRLP*PAQVNSSGQSTGDW Trigger: CCAATCCCCTGTAGACTGACCAGATGAATTGACCTGGGCTGGGCAGGGCAGGCGTGTTTGACCAGTTGTCTGGGCACCCCATGGCTCAGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000434537.1 ENST00000437900.1 |
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| CDS CCA 90 bp | TCACACAGGCGGTTGGCGGTGAAGCTGAGTTCCAGATCAGGTCTGTaGGATTTGGGAAGCCATGCTCTGCTCTGCCCCCGAGAAAGCGGT | + |
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Preference number: 5 (lower is better) Translates to: SHRRLAVKLSSRSGL*DLGSHALLCPRESG Trigger: ACCGCTTTCTCGGGGGCAGAGCAGAGCATGGCTTCCCAAATCCCACAGACCTGATCTGGAACTCAGCTTCACCGCCAACCGCCTGTGTGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000451953.1 |
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| CDS CCA 90 bp | GAAGGGACACAGCTGAGGAGTCTGAGAGATTTAGTAGGAGTTGTCTaGGTGAAGGAGAAGGCAGGGCAAGTTGGGGAGGCACGAGCACGT | + |
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Preference number: 5 (lower is better) Translates to: EGTQLRSLRDLVGVV*VKEKAGQVGEARAR Trigger: ACGTGCTCGTGCCTCCCCAACTTGCCCTGCCTTCTCCTTCACCCAGACAACTCCTACTAAATCTCTCAGACTCCTCAGCTGTGTCCCTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000434537.1 ENST00000437900.1 |
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| CDS CCA 90 bp | GGATTTGGGAAGCCATGCTCTGCTCTGCCCCCGAGAAAGCGGTTCTaGTGCTGTAACAAATATCCCATTGACCTGGGGGCGACATTTCTC | + |
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Preference number: 5 (lower is better) Translates to: GFGKPCSALPPRKRF*CCNKYPIDLGATFL Trigger: GAGAAATGTCGCCCCCAGGTCAATGGGATATTTGTTACAGCACCAGAACCGCTTTCTCGGGGGCAGAGCAGAGCATGGCTTCCCAAATCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000451953.1 |
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| CDS GCA 90 bp | TTTGGGAAGCCATGCTCTGCTCTGCCCCCGAGAAAGCGGTTCTGGTaGTGTAACAAATATCCCATTGACCTGGGGGCGACATTTCTCACA | + |
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Preference number: 5 (lower is better) Translates to: FGKPCSALPPRKRFW*CNKYPIDLGATFLT Trigger: TGTGAGAAATGTCGCCCCCAGGTCAATGGGATATTTGTTACAGCACCAGAACCGCTTTCTCGGGGGCAGAGCAGAGCATGGCTTCCCAAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000451953.1 |
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| CDS CCA 90 bp | ACCCAGCACGCAGGCTCCCTAAAGGTAGAGTTCTCAGGCAGTACCTaGTGCTGTAACAAATATCCCATTGACCTGGGGGCGACATTTCTC | + |
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Preference number: 5 (lower is better) Translates to: TQHAGSLKVEFSGST*CCNKYPIDLGATFL Trigger: GAGAAATGTCGCCCCCAGGTCAATGGGATATTTGTTACAGCACCAGGTACTGCCTGAGAACTCTACCTTTAGGGAGCCTGCGTGCTGGGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000434537.1 ENST00000437900.1 |
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| CDS GCA 90 bp | CAGCACGCAGGCTCCCTAAAGGTAGAGTTCTCAGGCAGTACCTGGTaGTGTAACAAATATCCCATTGACCTGGGGGCGACATTTCTCACA | + |
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Preference number: 5 (lower is better) Translates to: QHAGSLKVEFSGSTW*CNKYPIDLGATFLT Trigger: TGTGAGAAATGTCGCCCCCAGGTCAATGGGATATTTGTTACAGCACCAGGTACTGCCTGAGAACTCTACCTTTAGGGAGCCTGCGTGCTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000434537.1 ENST00000437900.1 |
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| CDS CCA 90 bp | CTCCTCCCATCAGCAGATGAGAGTGTGATCTGGGTGAGTGACAACTaGACCTCCGCATCCTCATCTGTAAAAAGGGATCACAAAACCTGC | + |
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Preference number: 5 (lower is better) Translates to: LLPSADESVIWVSDN*TSASSSVKRDHKTC Trigger: GCAGGTTTTGTGATCCCTTTTTACAGATGAGGATGCGGAGGTCCAGTTGTCACTCACCCAGATCACACTCTCATCTGCTGATGGGAGGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000434537.1 ENST00000437900.1 |
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| CDS TCA 90 bp | AGCTTCAGCATGCTCATGACTTCTGCTTCTTCTGATGGCTTGCCATaGCCTCTCACTGGCTATCCTTCAACAGCAGTCAGCTTTGCAGTG | + |
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Preference number: 5 (lower is better) Translates to: SFSMLMTSASSDGLP*PLTGYPSTAVSFAV Trigger: CACTGCAAAGCTGACTGCTGTTGAAGGATAGCCAGTGAGAGGTCATGGCAAGCCATCAGAAGAAGCAGAAGTCATGAGCATGCTGAAGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000434537.1 ENST00000437900.1 |
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| CDS CCA 90 bp | CTTTCACTTTGTGCGCACAATGCTTTTAATGCAGCCCCGTTGCCATaGCGATTACCATGTCTCAGCTTACTGAGGTGGCGTTGCAAACCA | + |
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Preference number: 5 (lower is better) Translates to: LSLCAHNAFNAAPLP*RLPCLSLLRWRCKP Trigger: TGGTTTGCAACGCCACCTCAGTAAGCTGAGACATGGTAATCGCCATGGCAACGGGGCTGCATTAAAAGCATTGTGCGCACAAAGTGAAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000434537.1 |
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| CDS CCA 90 bp | TATTACAAGGCTACAGGGATCTCAGTGGACCCCAAGGACAGGAGCTaGAGTCAGAACAGGTCCCAAGAGAGTAGTACTGGATCTGAGTTA | + |
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Preference number: 5 (lower is better) Translates to: YYKATGISVDPKDRS*SQNRSQESSTGSEL Trigger: TAACTCAGATCCAGTACTACTCTCTTGGGACCTGTTCTGACTCCAGCTCCTGTCCTTGGGGTCCACTGAGATCCCTGTAGCCTTGTAATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000434537.1 ENST00000437900.1 |
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| CDS TCA 90 bp | GGCAATGTGACATTTTGTCTTGGCCTCATAGCTTCAGCATGCTCATaGCTTCTGCTTCTTCTGATGGCTTGCCATGACCTCTCACTGGCT | + |
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Preference number: 5 (lower is better) Translates to: GNVTFCLGLIASACS*LLLLLMACHDLSLA Trigger: AGCCAGTGAGAGGTCATGGCAAGCCATCAGAAGAAGCAGAAGTCATGAGCATGCTGAAGCTATGAGGCCAAGACAAAATGTCACATTGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000434537.1 ENST00000437900.1 |
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| CDS CCA 90 bp | GGAACCAAGGTCAGAAGCCTCATAGAGCAGGAAGTATGGGTTTTGTaGCCTGTTGATGGCAGAAGCTTCTATCTTAGGCTTAGAGTCTCC | + |
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Preference number: 5 (lower is better) Translates to: GTKVRSLIEQEVWVL*PVDGRSFYLRLRVS Trigger: GGAGACTCTAAGCCTAAGATAGAAGCTTCTGCCATCAACAGGCCACAAAACCCATACTTCCTGCTCTATGAGGCTTCTGACCTTGGTTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000434537.1 |
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| CDS CCA 90 bp | TATCCTTCAACAGCAGTCAGCTTTGCAGTGACACAATATTCAAACTaGGTGTCAAGCACCTTCATTGTCTCCCCAGTGACCCAGCACGCA | + |
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Preference number: 5 (lower is better) Translates to: YPSTAVSFAVTQYSN*VSSTFIVSPVTQHA Trigger: TGCGTGCTGGGTCACTGGGGAGACAATGAAGGTGCTTGACACCCAGTTTGAATATTGTGTCACTGCAAAGCTGACTGCTGTTGAAGGATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000434537.1 ENST00000437900.1 |
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| CDS CCA 90 bp | ACATCCCATCAAATACTCCTCCCATCAGCAGATGAGAGTGTGATCTaGGTGAGTGACAACTGGACCTCCGCATCCTCATCTGTAAAAAGG | + |
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Preference number: 5 (lower is better) Translates to: TSHQILLPSADESVI*VSDNWTSASSSVKR Trigger: CCTTTTTACAGATGAGGATGCGGAGGTCCAGTTGTCACTCACCCAGATCACACTCTCATCTGCTGATGGGAGGAGTATTTGATGGGATGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000434537.1 ENST00000437900.1 |
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| CDS TCA 90 bp | CATGACCTCTCACTGGCTATCCTTCAACAGCAGTCAGCTTTGCAGTaGCACAATATTCAAACTGGGTGTCAAGCACCTTCATTGTCTCCC | + |
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Preference number: 5 (lower is better) Translates to: HDLSLAILQQQSALQ*HNIQTGCQAPSLSP Trigger: GGGAGACAATGAAGGTGCTTGACACCCAGTTTGAATATTGTGTCACTGCAAAGCTGACTGCTGTTGAAGGATAGCCAGTGAGAGGTCATG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000434537.1 ENST00000437900.1 |
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| CDS TCA 90 bp | AAAGACAAAACCAAAAGGTGCATCTTAATTAGGGAACAGGTGCAGTaGGACCAGACTGAACTCTGCCAGGCAGCAGCCTTTCACTTTGTG | + |
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Preference number: 5 (lower is better) Translates to: KDKTKRCILIREQVQ*DQTELCQAAAFHFV Trigger: CACAAAGTGAAAGGCTGCTGCCTGGCAGAGTTCAGTCTGGTCTCACTGCACCTGTTCCCTAATTAAGATGCACCTTTTGGTTTTGTCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000434537.1 |
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| CDS GCA 90 bp | CTTGCCATGACCTCTCACTGGCTATCCTTCAACAGCAGTCAGCTTTaGAGTGACACAATATTCAAACTGGGTGTCAAGCACCTTCATTGT | + |
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Preference number: 5 (lower is better) Translates to: LAMTSHWLSFNSSQL*SDTIFKLGVKHLHC Trigger: ACAATGAAGGTGCTTGACACCCAGTTTGAATATTGTGTCACTGCAAAGCTGACTGCTGTTGAAGGATAGCCAGTGAGAGGTCATGGCAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000434537.1 ENST00000437900.1 |
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| CDS CCA 90 bp | GTTGCCTGTTTGTCCCTCTTCTTGTGGCAATGTGACATTTTGTCTTaGCCTCATAGCTTCAGCATGCTCATGACTTCTGCTTCTTCTGAT | + |
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Preference number: 5 (lower is better) Translates to: VACLSLFLWQCDILS*PHSFSMLMTSASSD Trigger: ATCAGAAGAAGCAGAAGTCATGAGCATGCTGAAGCTATGAGGCCAAGACAAAATGTCACATTGCCACAAGAAGAGGGACAAACAGGCAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000434537.1 ENST00000437900.1 |
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| CDS CCA 72 bp | AACACGCCTGCCCTGCCCAGCCCAGGTCAATTCATCTaGTCAGTCTACAGGGGATTGGGGGCAGGCCAGCCT | + |
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Preference number: 6 (lower is better) Translates to: NTPALPSPGQFI*SVYRGLGAGQP Trigger: AGGCTGGCCTGCCCCCAATCCCCTGTAGACTGACCAGATGAATTGACCTGGGCTGGGCAGGGCAGGCGTGTT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000434537.1 ENST00000437900.1 |
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| CDS GCA 72 bp | AGCCATGGGGTGCCCAGACAACTGGTCAAACACGCCTaGCCTGCCCAGCCCAGGTCAATTCATCTGGTCAGT | + |
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Preference number: 6 (lower is better) Translates to: SHGVPRQLVKHA*PAQPRSIHLVS Trigger: ACTGACCAGATGAATTGACCTGGGCTGGGCAGGGCAGGCGTGTTTGACCAGTTGTCTGGGCACCCCATGGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000434537.1 ENST00000437900.1 |
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| CDS CCA 72 bp | AGGAGTTGTCTGGGTGAAGGAGAAGGCAGGGCAAGTTaGGGAGGCACGAGCACGTGCAAAGGCCCAGTGGTA | + |
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Preference number: 6 (lower is better) Translates to: RSCLGEGEGRAS*GGTSTCKGPVV Trigger: TACCACTGGGCCTTTGCACGTGCTCGTGCCTCCCCAACTTGCCCTGCCTTCTCCTTCACCCAGACAACTCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000434537.1 ENST00000437900.1 |
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| CDS CCA 72 bp | CGGTTGGCGGTGAAGCTGAGTTCCAGATCAGGTCTGTaGGATTTGGGAAGCCATGCTCTGCTCTGCCCCCGA | + |
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Preference number: 6 (lower is better) Translates to: RLAVKLSSRSGL*DLGSHALLCPR Trigger: TCGGGGGCAGAGCAGAGCATGGCTTCCCAAATCCCACAGACCTGATCTGGAACTCAGCTTCACCGCCAACCG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000451953.1 |
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| CDS CAA 90 bp | AGGCGGTTGGCGGTGAAGCTGAGTTCCAGATCAGGTCTGTGGGATTaGGGAAGCCATGCTCTGCTCTGCCCCCGAGAAAGCGGTTCTGGT | + |
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Preference number: 6 (lower is better) Translates to: RRLAVKLSSRSGLWD*GSHALLCPRESGSG Trigger: ACCAGAACCGCTTTCTCGGGGGCAGAGCAGAGCATGGCTTCCCAAATCCCACAGACCTGATCTGGAACTCAGCTTCACCGCCAACCGCCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000451953.1 |
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| CDS TCA 72 bp | CCCCGTTGCCATGGCGATTACCATGTCTCAGCTTACTaGGGTGGCGTTGCAAACCAGGTTGGGCAGCCTGTC | + |
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Preference number: 6 (lower is better) Translates to: PRCHGDYHVSAY*GGVANQVGQPV Trigger: GACAGGCTGCCCAACCTGGTTTGCAACGCCACCTCAGTAAGCTGAGACATGGTAATCGCCATGGCAACGGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000434537.1 |
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| CDS GCA 72 bp | TGGGGTGCCCAGACAACTGGTCAAACACGCCTGCCCTaGCCAGCCCAGGTCAATTCATCTGGTCAGTCTACA | + |
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Preference number: 6 (lower is better) Translates to: WGAQTTGQTRLP*PAQVNSSGQST Trigger: TGTAGACTGACCAGATGAATTGACCTGGGCTGGGCAGGGCAGGCGTGTTTGACCAGTTGTCTGGGCACCCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000434537.1 ENST00000437900.1 |
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| CDS GCA 72 bp | GAGTTCCAGATCAGGTCTGTGGGATTTGGGAAGCCATaGTCTGCTCTGCCCCCGAGAAAGCGGTTCTGGTGC | + |
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Preference number: 6 (lower is better) Translates to: EFQIRSVGFGKP*SALPPRKRFWC Trigger: GCACCAGAACCGCTTTCTCGGGGGCAGAGCAGAGCATGGCTTCCCAAATCCCACAGACCTGATCTGGAACTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000451953.1 |
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| CDS CAA 72 bp | GCGGTGAAGCTGAGTTCCAGATCAGGTCTGTGGGATTaGGGAAGCCATGCTCTGCTCTGCCCCCGAGAAAGC | + |
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Preference number: 6 (lower is better) Translates to: AVKLSSRSGLWD*GSHALLCPRES Trigger: GCTTTCTCGGGGGCAGAGCAGAGCATGGCTTCCCAAATCCCACAGACCTGATCTGGAACTCAGCTTCACCGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000451953.1 |
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| CDS TCA 72 bp | CAGCAAATCACTGTGCACTTTCTCACTTGCTGCCCATaGTCCCCCATGCTCCAACCACCGGGCAGGCCCATA | + |
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Preference number: 6 (lower is better) Translates to: QQITVHFLTCCP*SPMLQPPGRPI Trigger: TATGGGCCTGCCCGGTGGTTGGAGCATGGGGGATCATGGGCAGCAAGTGAGAAAGTGCACAGTGATTTGCTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000434537.1 |
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| CDS TCA 72 bp | GGCCCTGGGGCGGTGAACTTTATGTGTCAACTTGACTaGGCCATGGGGTGCCCAGACAACTGGTCAAACACG | + |
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Preference number: 6 (lower is better) Translates to: GPGAVNFMCQLD*AMGCPDNWSNT Trigger: CGTGTTTGACCAGTTGTCTGGGCACCCCATGGCTCAGTCAAGTTGACACATAAAGTTCACCGCCCCAGGGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000434537.1 ENST00000437900.1 |
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| CDS CCA 72 bp | AAGCCATGCTCTGCTCTGCCCCCGAGAAAGCGGTTCTaGTGCTGTAACAAATATCCCATTGACCTGGGGGCG | + |
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Preference number: 6 (lower is better) Translates to: KPCSALPPRKRF*CCNKYPIDLGA Trigger: CGCCCCCAGGTCAATGGGATATTTGTTACAGCACCAGAACCGCTTTCTCGGGGGCAGAGCAGAGCATGGCTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000451953.1 |
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| CDS CAA 72 bp | GAGGGAGAAGGTCTCCCCCAAGGGGCTGGGTGTGAGTaGGTCCTTAATATGGTGAGGACAGATCCAGTGCTA | + |
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Preference number: 6 (lower is better) Translates to: EGEGLPQGAGCE*VLNMVRTDPVL Trigger: TAGCACTGGATCTGTCCTCACCATATTAAGGACCAACTCACACCCAGCCCCTTGGGGGAGACCTTCTCCCTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000451953.1 |
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| CDS TCA 72 bp | GTTAGTCCCAAGGCCTCAGTGTCAGCAGGAGATTACTaGTTCCCATGGGCTCTGCCTGTTGCCTGTTTGTCC | + |
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Preference number: 6 (lower is better) Translates to: VSPKASVSAGDY*FPWALPVACLS Trigger: GGACAAACAGGCAACAGGCAGAGCCCATGGGAATCAGTAATCTCCTGCTGACACTGAGGCCTTGGGACTAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000434537.1 ENST00000437900.1 |
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| CDS GCA 72 bp | TCAGGTCTGTGGGATTTGGGAAGCCATGCTCTGCTCTaGCCCCGAGAAAGCGGTTCTGGTGCTGTAACAAAT | + |
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Preference number: 6 (lower is better) Translates to: SGLWDLGSHALL*PRESGSGAVTN Trigger: ATTTGTTACAGCACCAGAACCGCTTTCTCGGGGGCAGAGCAGAGCATGGCTTCCCAAATCCCACAGACCTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000451953.1 |
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| CDS CCA 72 bp | GCAGGCTCCCTAAAGGTAGAGTTCTCAGGCAGTACCTaGTGCTGTAACAAATATCCCATTGACCTGGGGGCG | + |
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Preference number: 6 (lower is better) Translates to: AGSLKVEFSGST*CCNKYPIDLGA Trigger: CGCCCCCAGGTCAATGGGATATTTGTTACAGCACCAGGTACTGCCTGAGAACTCTACCTTTAGGGAGCCTGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000434537.1 ENST00000437900.1 |
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| CDS CAA 72 bp | AGAGGTTACATAGCTTCCTCAAGGTCACACAGGCGGTaGGCGGTGAAGCTGAGTTCCAGATCAGGTCTGTGG | + |
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Preference number: 6 (lower is better) Translates to: RGYIASSRSHRR*AVKLSSRSGLW Trigger: CCACAGACCTGATCTGGAACTCAGCTTCACCGCCAACCGCCTGTGTGACCTTGAGGAAGCTATGTAACCTCT 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000451953.1 |
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| CDS CAA 90 bp | AGGACAGACCTCGGTCTGGTCTCCCCTAGGCCTAGACACAGATACTaGATAAGGAGGGAGGATTCTAGGGAACCAAGGTCAGAAGCCTCA | + |
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Preference number: 6 (lower is better) Translates to: RTDLGLVSPRPRHRY*IRREDSREPRSEAS Trigger: TGAGGCTTCTGACCTTGGTTCCCTAGAATCCTCCCTCCTTATCAAGTATCTGTGTCTAGGCCTAGGGGAGACCAGACCGAGGTCTGTCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000434537.1 |
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| CDS CAA 90 bp | GACAGAGCTGAGGGAGAAGGTCTCCCCCAAGGGGCTGGGTGTGAGTaGGTCCTTAATATGGTGAGGACAGATCCAGTGCTAAACAGTGAA | + |
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Preference number: 6 (lower is better) Translates to: DRAEGEGLPQGAGCE*VLNMVRTDPVLNSE Trigger: TTCACTGTTTAGCACTGGATCTGTCCTCACCATATTAAGGACCAACTCACACCCAGCCCCTTGGGGGAGACCTTCTCCCTCAGCTCTGTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000451953.1 |
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| CDS GCA 72 bp | GGCTCCCTAAAGGTAGAGTTCTCAGGCAGTACCTGGTaGTGTAACAAATATCCCATTGACCTGGGGGCGACA | + |
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Preference number: 6 (lower is better) Translates to: GSLKVEFSGSTW*CNKYPIDLGAT Trigger: TGTCGCCCCCAGGTCAATGGGATATTTGTTACAGCACCAGGTACTGCCTGAGAACTCTACCTTTAGGGAGCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000434537.1 ENST00000437900.1 |
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| CDS CCA 72 bp | TGTGCGCACAATGCTTTTAATGCAGCCCCGTTGCCATaGCGATTACCATGTCTCAGCTTACTGAGGTGGCGT | + |
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Preference number: 6 (lower is better) Translates to: CAHNAFNAAPLP*RLPCLSLLRWR Trigger: ACGCCACCTCAGTAAGCTGAGACATGGTAATCGCCATGGCAACGGGGCTGCATTAAAAGCATTGTGCGCACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000434537.1 |
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| CDS CAA 72 bp | CTCGGTCTGGTCTCCCCTAGGCCTAGACACAGATACTaGATAAGGAGGGAGGATTCTAGGGAACCAAGGTCA | + |
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Preference number: 6 (lower is better) Translates to: LGLVSPRPRHRY*IRREDSREPRS Trigger: TGACCTTGGTTCCCTAGAATCCTCCCTCCTTATCAAGTATCTGTGTCTAGGCCTAGGGGAGACCAGACCGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000434537.1 |
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| CDS CAA 90 bp | AGCAGCCTTTCACTTTGTGCGCACAATGCTTTTAATGCAGCCCCGTaGCCATGGCGATTACCATGTCTCAGCTTACTGAGGTGGCGTTGC | + |
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Preference number: 6 (lower is better) Translates to: SSLSLCAHNAFNAAP*PWRLPCLSLLRWRC Trigger: GCAACGCCACCTCAGTAAGCTGAGACATGGTAATCGCCATGGCAACGGGGCTGCATTAAAAGCATTGTGCGCACAAAGTGAAAGGCTGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000434537.1 |
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| CDS TCA 72 bp | CCATGCTCCAACCACCGGGCAGGCCCATATTGGGCATaGAAGGATCTTGGCCTTAATTTTTCTTTTGCCTCG | + |
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Preference number: 6 (lower is better) Translates to: PCSNHRAGPYWA*KDLGLNFSFAS Trigger: CGAGGCAAAAGAAAAATTAAGGCCAAGATCCTTTCATGCCCAATATGGGCCTGCCCGGTGGTTGGAGCATGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000434537.1 |
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| CDS CCA 72 bp | CAAATACTCCTCCCATCAGCAGATGAGAGTGTGATCTaGGTGAGTGACAACTGGACCTCCGCATCCTCATCT | + |
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Preference number: 6 (lower is better) Translates to: QILLPSADESVI*VSDNWTSASSS Trigger: AGATGAGGATGCGGAGGTCCAGTTGTCACTCACCCAGATCACACTCTCATCTGCTGATGGGAGGAGTATTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000434537.1 ENST00000437900.1 |
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| CDS CCA 72 bp | TCACCTCCTTTAACGTCACAGCCACCTCTCTCATTTTaGGGTGAGTCAGCTGAGCCCCAGAGAGGTTACATA | + |
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Preference number: 6 (lower is better) Translates to: SPPLTSQPPLSF*GESAEPQRGYI Trigger: TATGTAACCTCTCTGGGGCTCAGCTGACTCACCCCAAAATGAGAGAGGTGGCTGTGACGTTAAAGGAGGTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000451953.1 |
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| CDS CAA 72 bp | CCATGGGCTCTGCCTGTTGCCTGTTTGTCCCTCTTCTaGTGGCAATGTGACATTTTGTCTTGGCCTCATAGC | + |
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Preference number: 6 (lower is better) Translates to: PWALPVACLSLF*WQCDILSWPHS Trigger: GCTATGAGGCCAAGACAAAATGTCACATTGCCACAAGAAGAGGGACAAACAGGCAACAGGCAGAGCCCATGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000434537.1 ENST00000437900.1 |
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| CDS CAA 90 bp | CATGCTCCAACCACCGGGCAGGCCCATATTGGGCATGAAAGGATCTaGGCCTTAATTTTTCTTTTGCCTCGTGGCGATAAAGGGAGCATT | + |
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Preference number: 6 (lower is better) Translates to: HAPTTGQAHIGHERI*ALIFLLPRGDKGSI Trigger: AATGCTCCCTTTATCGCCACGAGGCAAAAGAAAAATTAAGGCCAAGATCCTTTCATGCCCAATATGGGCCTGCCCGGTGGTTGGAGCATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000434537.1 |
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| CDS TCA 72 bp | ACCAAAAGGTGCATCTTAATTAGGGAACAGGTGCAGTaGGACCAGACTGAACTCTGCCAGGCAGCAGCCTTT | + |
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Preference number: 6 (lower is better) Translates to: TKRCILIREQVQ*DQTELCQAAAF Trigger: AAAGGCTGCTGCCTGGCAGAGTTCAGTCTGGTCTCACTGCACCTGTTCCCTAATTAAGATGCACCTTTTGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000434537.1 |
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| CDS TCA 72 bp | ATGCTCATGACTTCTGCTTCTTCTGATGGCTTGCCATaGCCTCTCACTGGCTATCCTTCAACAGCAGTCAGC | + |
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Preference number: 6 (lower is better) Translates to: MLMTSASSDGLP*PLTGYPSTAVS Trigger: GCTGACTGCTGTTGAAGGATAGCCAGTGAGAGGTCATGGCAAGCCATCAGAAGAAGCAGAAGTCATGAGCAT 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000434537.1 ENST00000437900.1 |
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| CDS GCA 72 bp | TCCAGTTTCTCAGGATGTAACAGCAGCAAATCACTGTaGACTTTCTCACTTGCTGCCCATGATCCCCCATGC | + |
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Preference number: 6 (lower is better) Translates to: SSFSGCNSSKSL*TFSLAAHDPPC Trigger: GCATGGGGGATCATGGGCAGCAAGTGAGAAAGTGCACAGTGATTTGCTGCTGTTACATCCTGAGAAACTGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000434537.1 |
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| CDS CCA 72 bp | TGGGCTCTGCCTGTTGCCTGTTTGTCCCTCTTCTTGTaGCAATGTGACATTTTGTCTTGGCCTCATAGCTTC | + |
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Preference number: 6 (lower is better) Translates to: WALPVACLSLFL*QCDILSWPHSF Trigger: GAAGCTATGAGGCCAAGACAAAATGTCACATTGCCACAAGAAGAGGGACAAACAGGCAACAGGCAGAGCCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000434537.1 ENST00000437900.1 |
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| CDS CCA 72 bp | TCAGCAGATGAGAGTGTGATCTGGGTGAGTGACAACTaGACCTCCGCATCCTCATCTGTAAAAAGGGATCAC | + |
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Preference number: 6 (lower is better) Translates to: SADESVIWVSDN*TSASSSVKRDH Trigger: GTGATCCCTTTTTACAGATGAGGATGCGGAGGTCCAGTTGTCACTCACCCAGATCACACTCTCATCTGCTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000434537.1 ENST00000437900.1 |
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| CDS CAA 72 bp | TCACTTTGTGCGCACAATGCTTTTAATGCAGCCCCGTaGCCATGGCGATTACCATGTCTCAGCTTACTGAGG | + |
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Preference number: 6 (lower is better) Translates to: SLCAHNAFNAAP*PWRLPCLSLLR Trigger: CCTCAGTAAGCTGAGACATGGTAATCGCCATGGCAACGGGGCTGCATTAAAAGCATTGTGCGCACAAAGTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000434537.1 |
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| CDS CAA 90 bp | CCTCAGTGTCAGCAGGAGATTACTGATTCCCATGGGCTCTGCCTGTaGCCTGTTTGTCCCTCTTCTTGTGGCAATGTGACATTTTGTCTT | + |
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Preference number: 6 (lower is better) Translates to: PQCQQEITDSHGLCL*PVCPSSCGNVTFCL Trigger: AAGACAAAATGTCACATTGCCACAAGAAGAGGGACAAACAGGCAACAGGCAGAGCCCATGGGAATCAGTAATCTCCTGCTGACACTGAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000434537.1 ENST00000437900.1 |
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| CDS CCA 72 bp | GGAACCAAGGTCAGAAGCCTCATAGAGCAGGAAGTATaGGTTTTGTGGCCTGTTGATGGCAGAAGCTTCTAT | + |
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Preference number: 6 (lower is better) Translates to: GTKVRSLIEQEV*VLWPVDGRSFY Trigger: ATAGAAGCTTCTGCCATCAACAGGCCACAAAACCCATACTTCCTGCTCTATGAGGCTTCTGACCTTGGTTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000434537.1 |
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| CDS CAA 72 bp | ACCACCGGGCAGGCCCATATTGGGCATGAAAGGATCTaGGCCTTAATTTTTCTTTTGCCTCGTGGCGATAAA | + |
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Preference number: 6 (lower is better) Translates to: TTGQAHIGHERI*ALIFLLPRGDK Trigger: TTTATCGCCACGAGGCAAAAGAAAAATTAAGGCCAAGATCCTTTCATGCCCAATATGGGCCTGCCCGGTGGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000434537.1 |
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| CDS TCA 72 bp | ACATTTTGTCTTGGCCTCATAGCTTCAGCATGCTCATaGCTTCTGCTTCTTCTGATGGCTTGCCATGACCTC | + |
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Preference number: 6 (lower is better) Translates to: TFCLGLIASACS*LLLLLMACHDL Trigger: GAGGTCATGGCAAGCCATCAGAAGAAGCAGAAGTCATGAGCATGCTGAAGCTATGAGGCCAAGACAAAATGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000434537.1 ENST00000437900.1 |
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| CDS GCA 72 bp | ACCTCTCACTGGCTATCCTTCAACAGCAGTCAGCTTTaGAGTGACACAATATTCAAACTGGGTGTCAAGCAC | + |
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Preference number: 6 (lower is better) Translates to: TSHWLSFNSSQL*SDTIFKLGVKH Trigger: GTGCTTGACACCCAGTTTGAATATTGTGTCACTGCAAAGCTGACTGCTGTTGAAGGATAGCCAGTGAGAGGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000434537.1 ENST00000437900.1 |
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| CDS GCA 72 bp | AACCTGCCTCCAGGACCCTCAGATACCTGGAGTGGATaGTGTGTTTTATTCATACACAAATACAACGAAGGG | + |
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Preference number: 6 (lower is better) Translates to: NLPPGPSDTWSG*CVLFIHKYNEG Trigger: CCCTTCGTTGTATTTGTGTATGAATAAAACACAGCATCCACTCCAGGTATCTGAGGGTCCTGGAGGCAGGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000434537.1 ENST00000437900.1 |
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| CDS CCA 72 bp | GTCAGAAGCCTCATAGAGCAGGAAGTATGGGTTTTGTaGCCTGTTGATGGCAGAAGCTTCTATCTTAGGCTT | + |
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Preference number: 6 (lower is better) Translates to: VRSLIEQEVWVL*PVDGRSFYLRL Trigger: AAGCCTAAGATAGAAGCTTCTGCCATCAACAGGCCACAAAACCCATACTTCCTGCTCTATGAGGCTTCTGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000434537.1 |
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| CDS CAA 72 bp | AAGGTCAGAAGCCTCATAGAGCAGGAAGTATGGGTTTaGTGGCCTGTTGATGGCAGAAGCTTCTATCTTAGG | + |
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Preference number: 6 (lower is better) Translates to: KVRSLIEQEVWV*WPVDGRSFYLR Trigger: CCTAAGATAGAAGCTTCTGCCATCAACAGGCCACAAAACCCATACTTCCTGCTCTATGAGGCTTCTGACCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000434537.1 |
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| CDS CAA 90 bp | ATGGCAGAAGCTTCTATCTTAGGCTTAGAGTCTCCAGCTAGGCTCTaGCTGGGAAAACAGTGCAGTCTTTGCTTTCTTTTATATCAGAGC | + |
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Preference number: 6 (lower is better) Translates to: MAEASILGLESPARL*LGKQCSLCFLLYQS Trigger: GCTCTGATATAAAAGAAAGCAAAGACTGCACTGTTTTCCCAGCAAGAGCCTAGCTGGAGACTCTAAGCCTAAGATAGAAGCTTCTGCCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000434537.1 |
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| CDS GCA 72 bp | TTAGAGTCTCCAGCTAGGCTCTTGCTGGGAAAACAGTaGAGTCTTTGCTTTCTTTTATATCAGAGCTGCATT | + |
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Preference number: 6 (lower is better) Translates to: LESPARLLLGKQ*SLCFLLYQSCI Trigger: AATGCAGCTCTGATATAAAAGAAAGCAAAGACTGCACTGTTTTCCCAGCAAGAGCCTAGCTGGAGACTCTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000434537.1 |
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