Pregenerated sensors for LINC01004 (Homo sapiens)
Ensembl gene IDs: ENSG00000228393Ensembl transcript IDs: ENST00000445184.1, ENST00000450686.1, ENST00000655204.1
Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS CCA 90 bp | AGAAAATGGTCAGGGAAGAGCCTTGCGATTCCCTTCGCCACTGCTTaGGTTCCATATCGGCCGCGGCAGCAACGATCACCATCGTCACTT | + |
Preference number: 5 (lower is better) Translates to: RKWSGKSLAIPFATA*VPYRPRQQRSPSSL Trigger: AAGTGACGATGGTGATCGTTGCTGCCGCGGCCGATATGGAACCCAAGCAGTGGCGAAGGGAATCGCAAGGCTCTTCCCTGACCATTTTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000450686.1 ENST00000655204.1 |
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CDS TCA 90 bp | CTAAGGAATCTCCAGTTCTCCAACTGGTGTGGGAATCAGATAACTTaGCTCCAGTGTGAATTGTGGTTACTGATGGTATCACTGAGTCTG | + |
Preference number: 5 (lower is better) Translates to: LRNLQFSNWCGNQIT*LQCELWLLMVSLSL Trigger: CAGACTCAGTGATACCATCAGTAACCACAATTCACACTGGAGTCAAGTTATCTGATTCCCACACCAGTTGGAGAACTGGAGATTCCTTAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000445184.1 ENST00000655204.1 |
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CDS CAA 90 bp | CGTCCACCTCGCGCAGGGACAGTAGAAAATGGTCAGGGAAGAGCCTaGCGATTCCCTTCGCCACTGCTTGGGTTCCATATCGGCCGCGGC | + |
Preference number: 6 (lower is better) Translates to: RPPRAGTVENGQGRA*RFPSPLLGFHIGRG Trigger: GCCGCGGCCGATATGGAACCCAAGCAGTGGCGAAGGGAATCGCAAGGCTCTTCCCTGACCATTTTCTACTGTCCCTGCGCGAGGTGGACG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000450686.1 |
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CDS CAA 72 bp | GTCAGGGAAGAGCCTTGCGATTCCCTTCGCCACTGCTaGGGTTCCATATCGGCCGCGGCAGCAACGATCACC | + |
Preference number: 6 (lower is better) Translates to: VREEPCDSLRHC*GSISAAAATIT Trigger: GGTGATCGTTGCTGCCGCGGCCGATATGGAACCCAAGCAGTGGCGAAGGGAATCGCAAGGCTCTTCCCTGAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000450686.1 ENST00000655204.1 |
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CDS CAA 90 bp | ACTCAGCCTCGCGCAGGGACAGTAGAAAATGGTCAGGGAAGAGCCTaGCGATTCCCTTCGCCACTGCTTGGGTTCCATATCGGCCGCGGC | + |
Preference number: 6 (lower is better) Translates to: TQPRAGTVENGQGRA*RFPSPLLGFHIGRG Trigger: GCCGCGGCCGATATGGAACCCAAGCAGTGGCGAAGGGAATCGCAAGGCTCTTCCCTGACCATTTTCTACTGTCCCTGCGCGAGGCTGAGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000445184.1 ENST00000655204.1 |
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CDS GCA 72 bp | ATGGTCAGGGAAGAGCCTTGCGATTCCCTTCGCCACTaGTTGGGTTCCATATCGGCCGCGGCAGCAACGATC | + |
Preference number: 6 (lower is better) Translates to: MVREEPCDSLRH*LGSISAAAATI Trigger: GATCGTTGCTGCCGCGGCCGATATGGAACCCAAGCAGTGGCGAAGGGAATCGCAAGGCTCTTCCCTGACCAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000445184.1 ENST00000450686.1 ENST00000655204.1 |
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CDS CCA 72 bp | TCAGGGAAGAGCCTTGCGATTCCCTTCGCCACTGCTTaGGTTCCATATCGGCCGCGGCAGCAACGATCACCA | + |
Preference number: 6 (lower is better) Translates to: SGKSLAIPFATA*VPYRPRQQRSP Trigger: TGGTGATCGTTGCTGCCGCGGCCGATATGGAACCCAAGCAGTGGCGAAGGGAATCGCAAGGCTCTTCCCTGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000450686.1 ENST00000655204.1 |
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CDS GCA 72 bp | GTAATTATATACTCCATGCTCCCTCCCAATCAGTGCTaGCTCAAAACGAACTGCTCTTCTAATTTTAGAGCT | + |
Preference number: 6 (lower is better) Translates to: VIIYSMLPPNQC*LKTNCSSNFRA Trigger: AGCTCTAAAATTAGAAGAGCAGTTCGTTTTGAGGCAGCACTGATTGGGAGGGAGCATGGAGTATATAATTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000445184.1 ENST00000655204.1 |
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CDS GCA 72 bp | TGTGTAATTATATACTCCATGCTCCCTCCCAATCAGTaGTGCCTCAAAACGAACTGCTCTTCTAATTTTAGA | + |
Preference number: 6 (lower is better) Translates to: CVIIYSMLPPNQ*CLKTNCSSNFR Trigger: TCTAAAATTAGAAGAGCAGTTCGTTTTGAGGCAGCACTGATTGGGAGGGAGCATGGAGTATATAATTACACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000445184.1 ENST00000655204.1 |