RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LINC01004 (Homo sapiens)

Ensembl gene IDs: ENSG00000228393

Ensembl transcript IDs: ENST00000445184.1, ENST00000450686.1, ENST00000655204.1

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp AGAAAATGGTCAGGGAAGAGCCTTGCGATTCCCTTCGCCACTGCTTaGGTTCCATATCGGCCGCGGCAGCAACGATCACCATCGTCACTT +
Preference number: 5 (lower is better)
Translates to: RKWSGKSLAIPFATA*VPYRPRQQRSPSSL
Trigger: AAGTGACGATGGTGATCGTTGCTGCCGCGGCCGATATGGAACCCAAGCAGTGGCGAAGGGAATCGCAAGGCTCTTCCCTGACCATTTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000450686.1
ENST00000655204.1
CDS TCA 90 bp CTAAGGAATCTCCAGTTCTCCAACTGGTGTGGGAATCAGATAACTTaGCTCCAGTGTGAATTGTGGTTACTGATGGTATCACTGAGTCTG +
Preference number: 5 (lower is better)
Translates to: LRNLQFSNWCGNQIT*LQCELWLLMVSLSL
Trigger: CAGACTCAGTGATACCATCAGTAACCACAATTCACACTGGAGTCAAGTTATCTGATTCCCACACCAGTTGGAGAACTGGAGATTCCTTAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000445184.1
ENST00000655204.1
CDS CAA 90 bp CGTCCACCTCGCGCAGGGACAGTAGAAAATGGTCAGGGAAGAGCCTaGCGATTCCCTTCGCCACTGCTTGGGTTCCATATCGGCCGCGGC +
Preference number: 6 (lower is better)
Translates to: RPPRAGTVENGQGRA*RFPSPLLGFHIGRG
Trigger: GCCGCGGCCGATATGGAACCCAAGCAGTGGCGAAGGGAATCGCAAGGCTCTTCCCTGACCATTTTCTACTGTCCCTGCGCGAGGTGGACG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000450686.1
CDS CAA 72 bp GTCAGGGAAGAGCCTTGCGATTCCCTTCGCCACTGCTaGGGTTCCATATCGGCCGCGGCAGCAACGATCACC +
Preference number: 6 (lower is better)
Translates to: VREEPCDSLRHC*GSISAAAATIT
Trigger: GGTGATCGTTGCTGCCGCGGCCGATATGGAACCCAAGCAGTGGCGAAGGGAATCGCAAGGCTCTTCCCTGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000450686.1
ENST00000655204.1
CDS CAA 90 bp ACTCAGCCTCGCGCAGGGACAGTAGAAAATGGTCAGGGAAGAGCCTaGCGATTCCCTTCGCCACTGCTTGGGTTCCATATCGGCCGCGGC +
Preference number: 6 (lower is better)
Translates to: TQPRAGTVENGQGRA*RFPSPLLGFHIGRG
Trigger: GCCGCGGCCGATATGGAACCCAAGCAGTGGCGAAGGGAATCGCAAGGCTCTTCCCTGACCATTTTCTACTGTCCCTGCGCGAGGCTGAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000445184.1
ENST00000655204.1
CDS GCA 72 bp ATGGTCAGGGAAGAGCCTTGCGATTCCCTTCGCCACTaGTTGGGTTCCATATCGGCCGCGGCAGCAACGATC +
Preference number: 6 (lower is better)
Translates to: MVREEPCDSLRH*LGSISAAAATI
Trigger: GATCGTTGCTGCCGCGGCCGATATGGAACCCAAGCAGTGGCGAAGGGAATCGCAAGGCTCTTCCCTGACCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000445184.1
ENST00000450686.1
ENST00000655204.1
CDS CCA 72 bp TCAGGGAAGAGCCTTGCGATTCCCTTCGCCACTGCTTaGGTTCCATATCGGCCGCGGCAGCAACGATCACCA +
Preference number: 6 (lower is better)
Translates to: SGKSLAIPFATA*VPYRPRQQRSP
Trigger: TGGTGATCGTTGCTGCCGCGGCCGATATGGAACCCAAGCAGTGGCGAAGGGAATCGCAAGGCTCTTCCCTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000450686.1
ENST00000655204.1
CDS GCA 72 bp GTAATTATATACTCCATGCTCCCTCCCAATCAGTGCTaGCTCAAAACGAACTGCTCTTCTAATTTTAGAGCT +
Preference number: 6 (lower is better)
Translates to: VIIYSMLPPNQC*LKTNCSSNFRA
Trigger: AGCTCTAAAATTAGAAGAGCAGTTCGTTTTGAGGCAGCACTGATTGGGAGGGAGCATGGAGTATATAATTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000445184.1
ENST00000655204.1
CDS GCA 72 bp TGTGTAATTATATACTCCATGCTCCCTCCCAATCAGTaGTGCCTCAAAACGAACTGCTCTTCTAATTTTAGA +
Preference number: 6 (lower is better)
Translates to: CVIIYSMLPPNQ*CLKTNCSSNFR
Trigger: TCTAAAATTAGAAGAGCAGTTCGTTTTGAGGCAGCACTGATTGGGAGGGAGCATGGAGTATATAATTACACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000445184.1
ENST00000655204.1