Pregenerated sensors for LINC01003 (Homo sapiens)
Ensembl gene IDs: ENSG00000261455Ensembl transcript IDs: ENST00000564834.1
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GGACGGCGGCCGGCGGCCGGCGGCGGAGGCAGGTGTCCCGAGGCCTaGCCCACCCCCACTACCGCGGGCAGGAAGAGGAAGGAGCCGCGG | + |
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Preference number: 5 (lower is better) Translates to: GRRPAAGGGGRCPEA*PTPTTAGRKRKEPR Trigger: CCGCGGCTCCTTCCTCTTCCTGCCCGCGGTAGTGGGGGTGGGGCAGGCCTCGGGACACCTGCCTCCGCCGCCGGCCGCCGGCCGCCGTCC 80% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000564834.1 |
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| CDS GCA 90 bp | GTGGCCAGGGAGAGAGCGCGCCCAGGTCCGCGGAACCACGGCTCCTaGCGCGGCGAGCGGGCCGGGAGTCTACGGTCGGGGCAGAGCCGC | + |
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Preference number: 5 (lower is better) Translates to: VARERARPGPRNHGS*RGERAGSLRSGQSR Trigger: GCGGCTCTGCCCCGACCGTAGACTCCCGGCCCGCTCGCCGCGGCAGGAGCCGTGGTTCCGCGGACCTGGGCGCGCTCTCTCCCTGGCCAC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564834.1 |
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| CDS GCA 90 bp | AGAGGGAGAAAGTGCAGGACGACCCGCCGGGAAGACCCGAGCGCGTaGGCCTTCCCCGCGGCTCCACGGGCACAAAACGGTGGCTCCGGA | + |
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Preference number: 5 (lower is better) Translates to: RGRKCRTTRREDPSA*AFPAAPRAQNGGSG Trigger: TCCGGAGCCACCGTTTTGTGCCCGTGGAGCCGCGGGGAAGGCGCACGCGCTCGGGTCTTCCCGGCGGGTCGTCCTGCACTTTCTCCCTCT 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000564834.1 |
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| CDS TCA 90 bp | CGCGGCCGTGCCTGGCGGGCGGGGGTGCCCGACCCGCGGAGCGCGTaGCCTAGTTCGTCCCAAAGTGGATTTGACAGGTTGTCAGCTCCA | + |
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Preference number: 5 (lower is better) Translates to: RGRAWRAGVPDPRSA*PSSSQSGFDRLSAP Trigger: TGGAGCTGACAACCTGTCAAATCCACTTTGGGACGAACTAGGTCACGCGCTCCGCGGGTCGGGCACCCCCGCCCGCCAGGCACGGCCGCG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000564834.1 |
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| CDS GCA 90 bp | TGCCTGGAAACAGAACGCCGCGGTCCGTACCGGAGAGGGAGAAAGTaGAGGACGACCCGCCGGGAAGACCCGAGCGCGTGCGCCTTCCCC | + |
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Preference number: 5 (lower is better) Translates to: CLETERRGPYRRGRK*RTTRREDPSACAFP Trigger: GGGGAAGGCGCACGCGCTCGGGTCTTCCCGGCGGGTCGTCCTGCACTTTCTCCCTCTCCGGTACGGACCGCGGCGTTCTGTTTCCAGGCA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564834.1 |
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| CDS GCA 90 bp | CCACGCTGCAGGCGTTGGACAGATCCGGCTTTACTGAGTCCACCATaGAGGGAAATGGACGCGCGGGCTAAGCGGAATCCCAGGGGCGCG | + |
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Preference number: 5 (lower is better) Translates to: PRCRRWTDPALLSPP*REMDARAKRNPRGA Trigger: CGCGCCCCTGGGATTCCGCTTAGCCCGCGCGTCCATTTCCCTGCATGGTGGACTCAGTAAAGCCGGATCTGTCCAACGCCTGCAGCGTGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564834.1 |
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| CDS GCA 90 bp | GAATCCCAGGGGCGCGATCGCACCGGCTGGCGTTCCAGCAAACCCTaGATCCCAGGCCCTGGATTCAGGCTGCCTTCTGAGTCTTTGACT | + |
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Preference number: 5 (lower is better) Translates to: ESQGRDRTGWRSSKP*IPGPGFRLPSESLT Trigger: AGTCAAAGACTCAGAAGGCAGCCTGAATCCAGGGCCTGGGATGCAGGGTTTGCTGGAACGCCAGCCGGTGCGATCGCGCCCCTGGGATTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564834.1 |
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| CDS TCA 90 bp | CGCCTCCACATCCACGCTGCAGGCGTTGGACAGATCCGGCTTTACTaGGTCCACCATGCAGGGAAATGGACGCGCGGGCTAAGCGGAATC | + |
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Preference number: 5 (lower is better) Translates to: RLHIHAAGVGQIRLY*VHHAGKWTRGLSGI Trigger: GATTCCGCTTAGCCCGCGCGTCCATTTCCCTGCATGGTGGACTCAGTAAAGCCGGATCTGTCCAACGCCTGCAGCGTGGATGTGGAGGCG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564834.1 |
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| CDS TCA 90 bp | CCCACATTTTACCCTTCAATTTACACAATTTGGAAGAAGAGTAGATaGGTTGGTCATTGTTACTTAAAACAATGCGTCACCTTGTTAGGG | + |
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Preference number: 5 (lower is better) Translates to: PTFYPSIYTIWKKSR*VGHCYLKQCVTLLG Trigger: CCCTAACAAGGTGACGCATTGTTTTAAGTAACAATGACCAACTCATCTACTCTTCTTCCAAATTGTGTAAATTGAAGGGTAAAATGTGGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000564834.1 |
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| CDS GCA 72 bp | GAGAGAGCGCGCCCAGGTCCGCGGAACCACGGCTCCTaGCGCGGCGAGCGGGCCGGGAGTCTACGGTCGGGG | + |
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Preference number: 6 (lower is better) Translates to: ERARPGPRNHGS*RGERAGSLRSG Trigger: CCCCGACCGTAGACTCCCGGCCCGCTCGCCGCGGCAGGAGCCGTGGTTCCGCGGACCTGGGCGCGCTCTCTC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564834.1 |
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| CDS GCA 72 bp | AAGTGCAGGACGACCCGCCGGGAAGACCCGAGCGCGTaGGCCTTCCCCGCGGCTCCACGGGCACAAAACGGT | + |
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Preference number: 6 (lower is better) Translates to: KCRTTRREDPSA*AFPAAPRAQNG Trigger: ACCGTTTTGTGCCCGTGGAGCCGCGGGGAAGGCGCACGCGCTCGGGTCTTCCCGGCGGGTCGTCCTGCACTT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000564834.1 |
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| CDS GCA 72 bp | ACAGAACGCCGCGGTCCGTACCGGAGAGGGAGAAAGTaGAGGACGACCCGCCGGGAAGACCCGAGCGCGTGC | + |
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Preference number: 6 (lower is better) Translates to: TERRGPYRRGRK*RTTRREDPSAC Trigger: GCACGCGCTCGGGTCTTCCCGGCGGGTCGTCCTGCACTTTCTCCCTCTCCGGTACGGACCGCGGCGTTCTGT 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564834.1 |
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| CDS TCA 72 bp | GCCTGGCGGGCGGGGGTGCCCGACCCGCGGAGCGCGTaGCCTAGTTCGTCCCAAAGTGGATTTGACAGGTTG | + |
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Preference number: 6 (lower is better) Translates to: AWRAGVPDPRSA*PSSSQSGFDRL Trigger: CAACCTGTCAAATCCACTTTGGGACGAACTAGGTCACGCGCTCCGCGGGTCGGGCACCCCCGCCCGCCAGGC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000564834.1 |
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| CDS CAA 90 bp | TGCCCGACCCGCGGAGCGCGTGACCTAGTTCGTCCCAAAGTGGATTaGACAGGTTGTCAGCTCCACTCCCCGCCCCCACCGCCTTCCGGG | + |
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Preference number: 6 (lower is better) Translates to: CPTRGARDLVRPKVD*TGCQLHSPPPPPSG Trigger: CCCGGAAGGCGGTGGGGGCGGGGAGTGGAGCTGACAACCTGTCAAATCCACTTTGGGACGAACTAGGTCACGCGCTCCGCGGGTCGGGCA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000564834.1 |
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| CDS CAA 72 bp | CGCGGAGCGCGTGACCTAGTTCGTCCCAAAGTGGATTaGACAGGTTGTCAGCTCCACTCCCCGCCCCCACCG | + |
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Preference number: 6 (lower is better) Translates to: RGARDLVRPKVD*TGCQLHSPPPP Trigger: CGGTGGGGGCGGGGAGTGGAGCTGACAACCTGTCAAATCCACTTTGGGACGAACTAGGTCACGCGCTCCGCG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000564834.1 |
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| CDS TCA 72 bp | ATCCACGCTGCAGGCGTTGGACAGATCCGGCTTTACTaGGTCCACCATGCAGGGAAATGGACGCGCGGGCTA | + |
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Preference number: 6 (lower is better) Translates to: IHAAGVGQIRLY*VHHAGKWTRGL Trigger: TAGCCCGCGCGTCCATTTCCCTGCATGGTGGACTCAGTAAAGCCGGATCTGTCCAACGCCTGCAGCGTGGAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564834.1 |
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| CDS GCA 72 bp | AGGCGTTGGACAGATCCGGCTTTACTGAGTCCACCATaGAGGGAAATGGACGCGCGGGCTAAGCGGAATCCC | + |
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Preference number: 6 (lower is better) Translates to: RRWTDPALLSPP*REMDARAKRNP Trigger: GGGATTCCGCTTAGCCCGCGCGTCCATTTCCCTGCATGGTGGACTCAGTAAAGCCGGATCTGTCCAACGCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564834.1 |
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| CDS CCA 72 bp | TTGATTAGTCCGCCTCCACATCCACGCTGCAGGCGTTaGACAGATCCGGCTTTACTGAGTCCACCATGCAGG | + |
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Preference number: 6 (lower is better) Translates to: LISPPPHPRCRR*TDPALLSPPCR Trigger: CCTGCATGGTGGACTCAGTAAAGCCGGATCTGTCCAACGCCTGCAGCGTGGATGTGGAGGCGGACTAATCAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564834.1 |
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| CDS CAA 90 bp | GGCCCTGGATTCAGGCTGCCTTCTGAGTCTTTGACTTATTTTCCTTaGCCTGGAAACAGAACGCCGCGGTCCGTACCGGAGAGGGAGAAA | + |
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Preference number: 6 (lower is better) Translates to: GPGFRLPSESLTYFP*PGNRTPRSVPEREK Trigger: TTTCTCCCTCTCCGGTACGGACCGCGGCGTTCTGTTTCCAGGCAAAGGAAAATAAGTCAAAGACTCAGAAGGCAGCCTGAATCCAGGGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564834.1 |
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| CDS CAA 90 bp | AAACCCTGCATCCCAGGCCCTGGATTCAGGCTGCCTTCTGAGTCTTaGACTTATTTTCCTTTGCCTGGAAACAGAACGCCGCGGTCCGTA | + |
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Preference number: 6 (lower is better) Translates to: KPCIPGPGFRLPSES*TYFPLPGNRTPRSV Trigger: TACGGACCGCGGCGTTCTGTTTCCAGGCAAAGGAAAATAAGTCAAAGACTCAGAAGGCAGCCTGAATCCAGGGCCTGGGATGCAGGGTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564834.1 |
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| CDS TCA 72 bp | TACCCTTCAATTTACACAATTTGGAAGAAGAGTAGATaGGTTGGTCATTGTTACTTAAAACAATGCGTCACC | + |
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Preference number: 6 (lower is better) Translates to: YPSIYTIWKKSR*VGHCYLKQCVT Trigger: GGTGACGCATTGTTTTAAGTAACAATGACCAACTCATCTACTCTTCTTCCAAATTGTGTAAATTGAAGGGTA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564834.1 |
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| CDS CCA 72 bp | TGTCCATTCAATGTTAAAGTTCTAAGCAAATTAGCATaGAGAAAAGGGATGGGTAGAAATAATAACAGAGCA | + |
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Preference number: 6 (lower is better) Translates to: CPFNVKVLSKLA*RKGMGRNNNRA Trigger: TGCTCTGTTATTATTTCTACCCATCCCTTTTCTCCATGCTAATTTGCTTAGAACTTTAACATTGAATGGACA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564834.1 |
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