Pregenerated sensors for LINC01002 (Homo sapiens)
Ensembl gene IDs: ENSG00000282508Ensembl transcript IDs: ENST00000631401.1, ENST00000631484.1, ENST00000631764.1, ENST00000631797.1, ENST00000631858.1, ENST00000631864.1, ENST00000631988.1, ENST00000632405.1, ENST00000632624.2, ENST00000633109.1, ENST00000633179.1, ENST00000633402.1, ENST00000633522.1, ENST00000633671.1, ENST00000633773.1, ENST00000634022.1, ENST00000660559.1, ENST00000666656.1
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CAGACAAAGCTTCCCTCACTCCCTCACTCGACACCGCTCACCTCCTaGTGTGTGGCTCCTTGCGGCTCCATGGCTCAGGGGTTGGGGACC | + |
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Preference number: 5 (lower is better) Translates to: QTKLPSLPHSTPLTS*CVAPCGSMAQGLGT Trigger: GGTCCCCAACCCCTGAGCCATGGAGCCGCAAGGAGCCACACAGCAGGAGGTGAGCGGTGTCGAGTGAGGGAGTGAGGGAAGCTTTGTCTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000631988.1 |
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| CDS GCA 90 bp | GCAGGAAACTCCAGTCATTCGAGACGGGCAGCACAGGCTGAGGAGTaGAGGCCACCTCTACGGCCAGGAAACAGATTCTCCCGCAGAGCC | + |
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Preference number: 5 (lower is better) Translates to: AGNSSHSRRAAQAEE*RPPLRPGNRFSRRA Trigger: GGCTCTGCGGGAGAATCTGTTTCCTGGCCGTAGAGGTGGCCTGCACTCCTCAGCCTGTGCTGCCCGTCTCGAATGACTGGAGTTTCCTGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000632624.2 ENST00000633179.1 ENST00000633522.1 ENST00000633671.1 ENST00000660559.1 ENST00000666656.1 |
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| CDS TCA 90 bp | GATTCTCCCGCAGAGCCTCGGAAGCTACCGACCCTGCTCCCACCTTaGCTCAGTAGGACTTACTGTAGAATTCTGGCCTTCAGACCTGAG | + |
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Preference number: 5 (lower is better) Translates to: DSPAEPRKLPTLLPP*LSRTYCRILAFRPE Trigger: CTCAGGTCTGAAGGCCAGAATTCTACAGTAAGTCCTACTGAGTCAAGGTGGGAGCAGGGTCGGTAGCTTCCGAGGCTCTGCGGGAGAATC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000632624.2 ENST00000633179.1 ENST00000633522.1 ENST00000633671.1 ENST00000660559.1 ENST00000666656.1 |
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| CDS GCA 90 bp | GCCAGGAAACAGATTCTCCCGCAGAGCCTCGGAAGCTACCGACCCTaGTCCCACCTTGACTCAGTAGGACTTACTGTAGAATTCTGGCCT | + |
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Preference number: 5 (lower is better) Translates to: ARKQILPQSLGSYRP*SHLDSVGLTVEFWP Trigger: AGGCCAGAATTCTACAGTAAGTCCTACTGAGTCAAGGTGGGAGCAGGGTCGGTAGCTTCCGAGGCTCTGCGGGAGAATCTGTTTCCTGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000632624.2 ENST00000633179.1 ENST00000633522.1 ENST00000633671.1 ENST00000660559.1 ENST00000666656.1 |
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| CDS CCA 90 bp | CATAATGTAGAATTAGTGGGCGTGTCAAGCTTGTTTTCCTGCAACTaGATGGTCCCACCTGTAGTCTCAGCCACGTGGGAGGTTGAGGTG | + |
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Preference number: 5 (lower is better) Translates to: HNVELVGVSSLFSCN*MVPPVVSATWEVEV Trigger: CACCTCAACCTCCCACGTGGCTGAGACTACAGGTGGGACCATCCAGTTGCAGGAAAACAAGCTTGACACGCCCACTAATTCTACATTATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000633402.1 |
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| CDS TCA 90 bp | AGCTTTGCAGATATAATGAAGTTAAGGGTCTTTGGCTTTTGGGGTTaGTGTACTCACTCGGATCCTTGTAAGAGCAGAGCAGGTGATGGA | + |
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Preference number: 5 (lower is better) Translates to: SFADIMKLRVFGFWG*CTHSDPCKSRAGDG Trigger: TCCATCACCTGCTCTGCTCTTACAAGGATCCGAGTGAGTACATCAACCCCAAAAGCCAAAGACCCTTAACTTCATTATATCTGCAAAGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000666656.1 |
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| CDS GCA 72 bp | CTTCCCTCACTCCCTCACTCGACACCGCTCACCTCCTaGTGTGTGGCTCCTTGCGGCTCCATGGCTCAGGGG | + |
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Preference number: 6 (lower is better) Translates to: LPSLPHSTPLTS*CVAPCGSMAQG Trigger: CCCCTGAGCCATGGAGCCGCAAGGAGCCACACAGCAGGAGGTGAGCGGTGTCGAGTGAGGGAGTGAGGGAAG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000631988.1 |
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| CDS CCA 72 bp | CACTCCCTCACTCGACACCGCTCACCTCCTGCTGTGTaGCTCCTTGCGGCTCCATGGCTCAGGGGTTGGGGA | + |
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Preference number: 6 (lower is better) Translates to: HSLTRHRSPPAV*LLAAPWLRGWG Trigger: TCCCCAACCCCTGAGCCATGGAGCCGCAAGGAGCCACACAGCAGGAGGTGAGCGGTGTCGAGTGAGGGAGTG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000631988.1 |
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| CDS GCA 72 bp | TCCAGTCATTCGAGACGGGCAGCACAGGCTGAGGAGTaGAGGCCACCTCTACGGCCAGGAAACAGATTCTCC | + |
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Preference number: 6 (lower is better) Translates to: SSHSRRAAQAEE*RPPLRPGNRFS Trigger: GGAGAATCTGTTTCCTGGCCGTAGAGGTGGCCTGCACTCCTCAGCCTGTGCTGCCCGTCTCGAATGACTGGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000632624.2 ENST00000633179.1 ENST00000633522.1 ENST00000633671.1 ENST00000660559.1 ENST00000666656.1 |
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| CDS GCA 72 bp | CAGATTCTCCCGCAGAGCCTCGGAAGCTACCGACCCTaGTCCCACCTTGACTCAGTAGGACTTACTGTAGAA | + |
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Preference number: 6 (lower is better) Translates to: QILPQSLGSYRP*SHLDSVGLTVE Trigger: TTCTACAGTAAGTCCTACTGAGTCAAGGTGGGAGCAGGGTCGGTAGCTTCCGAGGCTCTGCGGGAGAATCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000632624.2 ENST00000633179.1 ENST00000633522.1 ENST00000633671.1 ENST00000660559.1 ENST00000666656.1 |
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| CDS CCA 72 bp | GAATTAGTGGGCGTGTCAAGCTTGTTTTCCTGCAACTaGATGGTCCCACCTCCTGCTGTGTGGCTCCTTGCG | + |
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Preference number: 6 (lower is better) Translates to: ELVGVSSLFSCN*MVPPPAVWLLA Trigger: CGCAAGGAGCCACACAGCAGGAGGTGGGACCATCCAGTTGCAGGAAAACAAGCTTGACACGCCCACTAATTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000631858.1 |
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| CDS CAA 90 bp | CAACAGAGGGAGACCCATAATGTAGAATCAGTGGGCGTGTTAAGCTaGTTTTCCTGCAACTGGATGTTCCCACCTCCTGCTGTGTGGCTC | + |
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Preference number: 6 (lower is better) Translates to: QQRETHNVESVGVLS*FSCNWMFPPPAVWL Trigger: GAGCCACACAGCAGGAGGTGGGAACATCCAGTTGCAGGAAAACAAGCTTAACACGCCCACTGATTCTACATTATGGGTCTCCCTCTGTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000631484.1 ENST00000632405.1 |
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| CDS GCA 72 bp | AATGTAGAATTAGTGGGCGTGTCAAGCTTGTTTTCCTaGAACTGGATGGTCCCACGTTTCGCTGTCACCCCT | + |
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Preference number: 6 (lower is better) Translates to: NVELVGVSSLFS*NWMVPRFAVTP Trigger: AGGGGTGACAGCGAAACGTGGGACCATCCAGTTGCAGGAAAACAAGCTTGACACGCCCACTAATTCTACATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENST00000631484.1 ENST00000631797.1 ENST00000631864.1 ENST00000633773.1 ENST00000634022.1 |
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| CDS GCA 72 bp | AATGTAGAATTAGTGGGCGTGTCAAGCTTGTTTTCCTaGAACTGGATGGTCCCACCTGAGCGTGATGGGAGA | + |
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Preference number: 6 (lower is better) Translates to: NVELVGVSSLFS*NWMVPPERDGR Trigger: TCTCCCATCACGCTCAGGTGGGACCATCCAGTTGCAGGAAAACAAGCTTGACACGCCCACTAATTCTACATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000631988.1 |
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| CDS GCA 72 bp | AATGTAGAATTAGTGGGCGTGTCAAGCTTGTTTTCCTaGAACTGGATGGTCCCACCTGTAGTCTCAGCCACG | + |
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Preference number: 6 (lower is better) Translates to: NVELVGVSSLFS*NWMVPPVVSAT Trigger: CGTGGCTGAGACTACAGGTGGGACCATCCAGTTGCAGGAAAACAAGCTTGACACGCCCACTAATTCTACATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000633402.1 |
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| CDS GCA 72 bp | AATGTAGAATCAGTGGGCGTGTTAAGCTTGTTTTCCTaGAACTGGATGTTCCCACCTGAGCGTGATGGGAGA | + |
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Preference number: 6 (lower is better) Translates to: NVESVGVLSLFS*NWMFPPERDGR Trigger: TCTCCCATCACGCTCAGGTGGGAACATCCAGTTGCAGGAAAACAAGCTTAACACGCCCACTGATTCTACATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000631401.1 ENST00000631764.1 ENST00000631797.1 |
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| CDS CAA 72 bp | GAGACCCATAATGTAGAATCAGTGGGCGTGTTAAGCTaGTTTTCCTGCAACTGGATGTTCCCACCTCCTGCT | + |
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Preference number: 6 (lower is better) Translates to: ETHNVESVGVLS*FSCNWMFPPPA Trigger: AGCAGGAGGTGGGAACATCCAGTTGCAGGAAAACAAGCTTAACACGCCCACTGATTCTACATTATGGGTCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000631484.1 ENST00000632405.1 |
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| CDS CAA 72 bp | GAGACCCATAATGTAGAATCAGTGGGCGTGTTAAGCTaGTTTTCCTGCAACTGGATGTTCCCACCTGAGCGT | + |
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Preference number: 6 (lower is better) Translates to: ETHNVESVGVLS*FSCNWMFPPER Trigger: ACGCTCAGGTGGGAACATCCAGTTGCAGGAAAACAAGCTTAACACGCCCACTGATTCTACATTATGGGTCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000631797.1 |
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| CDS CCA 72 bp | GAAAATCCCTTGAGTGCAGGAGTTCAAGGTCAGCCATaGCAACATACTGAGGTCCCATCTCTGAATAACATG | + |
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Preference number: 6 (lower is better) Translates to: ENPLSAGVQGQP*QHTEVPSLNNM Trigger: CATGTTATTCAGAGATGGGACCTCAGTATGTTGCCATGGCTGACCTTGAACTCCTGCACTCAAGGGATTTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000633109.1 |
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| CDS TCA 72 bp | GATATAATGAAGTTAAGGGTCTTTGGCTTTTGGGGTTaGTGTACTCACTCGGATCCTTGTAAGAGCAGAGCA | + |
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Preference number: 6 (lower is better) Translates to: DIMKLRVFGFWG*CTHSDPCKSRA Trigger: TGCTCTGCTCTTACAAGGATCCGAGTGAGTACATCAACCCCAAAAGCCAAAGACCCTTAACTTCATTATATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000666656.1 |
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| CDS CCA 72 bp | AAGGAGCTTTGCAGATATAATGAAGTTAAGGGTCTTTaGCTTTTGGGGTTGATGTACTCACTCGGATCCTTG | + |
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Preference number: 6 (lower is better) Translates to: KELCRYNEVKGL*LLGLMYSLGSL Trigger: CAAGGATCCGAGTGAGTACATCAACCCCAAAAGCCAAAGACCCTTAACTTCATTATATCTGCAAAGCTCCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000666656.1 |
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