Pregenerated sensors for LINC00996 (Homo sapiens)
Ensembl gene IDs: ENSG00000242258Ensembl transcript IDs: ENST00000477392.1, ENST00000486954.1
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TTCCATCTAGGCGGACTCCTCCCAGCTTCCCTGTGCTCTCTGCGCTaGGAAAAGCTCGCAGCTGAAGCGAATGAAGCCGTGGCCGCAGCC | + |
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Preference number: 5 (lower is better) Translates to: FHLGGLLPASLCSLR*EKLAAEANEAVAAA Trigger: GGCTGCGGCCACGGCTTCATTCGCTTCAGCTGCGAGCTTTTCTCAGCGCAGAGAGCACAGGGAAGCTGGGAGGAGTCCGCCTAGATGGAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000477392.1 |
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| CDS GCA 90 bp | CCTGGAGGAGCTCTCCACGACGTCAAACTAAACGGGTGCAGCATGTaGAAAGGGGCAGAGAGACTGAGCGGCCTCCCCACTCATCTACCA | + |
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Preference number: 5 (lower is better) Translates to: PGGALHDVKLNGCSM*KGAERLSGLPTHLP Trigger: TGGTAGATGAGTGGGGAGGCCGCTCAGTCTCTCTGCCCCTTTGCACATGCTGCACCCGTTTAGTTTGACGTCGTGGAGAGCTCCTCCAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000477392.1 ENST00000486954.1 |
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| CDS CCA 90 bp | ACAAGGCAAGACCCCATTTCAGGCTGTTGTGGGAACCGAACGATGTaGCAGAGAGTCCAGCTCAGCTTCCTACCGTTCCACGAGGGCCAC | + |
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Preference number: 5 (lower is better) Translates to: TRQDPISGCCGNRTM*QRVQLSFLPFHEGH Trigger: GTGGCCCTCGTGGAACGGTAGGAAGCTGAGCTGGACTCTCTGCCACATCGTTCGGTTCCCACAACAGCCTGAAATGGGGTCTTGCCTTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000486954.1 |
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| CDS CCA 90 bp | TTTTCTGCTGCTGCTTCATCAGGCTGTTGTGGGAACCGAACGATGTaGCAGAGAGTCCAGCTCAGCTTCCTACCGTTCCACGAGGGCCAC | + |
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Preference number: 5 (lower is better) Translates to: FSAAASSGCCGNRTM*QRVQLSFLPFHEGH Trigger: GTGGCCCTCGTGGAACGGTAGGAAGCTGAGCTGGACTCTCTGCCACATCGTTCGGTTCCCACAACAGCCTGATGAAGCAGCAGCAGAAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000477392.1 |
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| CDS CCA 90 bp | GGCCGCAGCCAAAATAGTGATTGTGTCGGAAGCGGTTGCGGACCCTaGAAAGGAAATGAGTCCAGAAGGCACAGAACCAGCAGGAACCGG | + |
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Preference number: 5 (lower is better) Translates to: GRSQNSDCVGSGCGP*KGNESRRHRTSRNR Trigger: CCGGTTCCTGCTGGTTCTGTGCCTTCTGGACTCATTTCCTTTCCAGGGTCCGCAACCGCTTCCGACACAATCACTATTTTGGCTGCGGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000477392.1 |
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| CDS TCA 90 bp | TGGCAGAGAGTCCAGCTCAGCTTCCTACCGTTCCACGAGGGCCACTaGAAGGCCAGTCCTCTTCAGCCTGCAATGAGAGAGATTGAAAGT | + |
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Preference number: 5 (lower is better) Translates to: WQRVQLSFLPFHEGH*KASPLQPAMREIES Trigger: ACTTTCAATCTCTCTCATTGCAGGCTGAAGAGGACTGGCCTTTCAGTGGCCCTCGTGGAACGGTAGGAAGCTGAGCTGGACTCTCTGCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000477392.1 |
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| CDS TCA 90 bp | CGTTCCACGAGGGCCACTGAAAGGCCAGTCCTCTTCAGCCTGCAATaGGAGAGATTGAAAGTGGAAGCAGGTCTAAGCTCACAGAATCAG | + |
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Preference number: 5 (lower is better) Translates to: RSTRATERPVLFSLQ*ERLKVEAGLSSQNQ Trigger: CTGATTCTGTGAGCTTAGACCTGCTTCCACTTTCAATCTCTCTCATTGCAGGCTGAAGAGGACTGGCCTTTCAGTGGCCCTCGTGGAACG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000477392.1 |
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| CDS GCA 90 bp | AGACAGCTTTTTCTGATTCTCATAAAGGGCAGTGGTCACCCAGGCTaGCTGGATGTGGAGCAGCCTGGCATCACAGTACTTTCTAGTGGC | + |
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Preference number: 5 (lower is better) Translates to: RQLFLILIKGSGHPG*LDVEQPGITVLSSG Trigger: GCCACTAGAAAGTACTGTGATGCCAGGCTGCTCCACATCCAGGCAGCCTGGGTGACCACTGCCCTTTATGAGAATCAGAAAAAGCTGTCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000477392.1 |
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| CDS GCA 90 bp | CCTCAATCTCCATTTCTGACCAGTGGATCCTTCCGCTTCTTACGCTaGCAACTGCTAAGATGTGACCCGTTAACCAAAATGGCTTCCATT | + |
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Preference number: 5 (lower is better) Translates to: PQSPFLTSGSFRFLR*QLLRCDPLTKMASI Trigger: AATGGAAGCCATTTTGGTTAACGGGTCACATCTTAGCAGTTGGCAGCGTAAGAAGCGGAAGGATCCACTGGTCAGAAATGGAGATTGAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000477392.1 ENST00000486954.1 |
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| CDS GCA 90 bp | TCACAGTTGTTAACACGATTGACCCAGTTGCCACATCAAAGGGAGTaGTATTCACTGCAGACATCTTTGTTATTTTGGAAAACATTATTA | + |
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Preference number: 5 (lower is better) Translates to: SQLLTRLTQLPHQRE*YSLQTSLLFWKTLL Trigger: TAATAATGTTTTCCAAAATAACAAAGATGTCTGCAGTGAATAGCACTCCCTTTGATGTGGCAACTGGGTCAATCGTGTTAACAACTGTGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000477392.1 |
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| CDS TCA 72 bp | CCCCACGTCAGGAGCCGGTGCTGTTGGCTCCCAGCATaGCCGGCAGAAAAGATGGGAGCCTACACAGCACCC | + |
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Preference number: 6 (lower is better) Translates to: PHVRSRCCWLPA*PAEKMGAYTAP Trigger: GGGTGCTGTGTAGGCTCCCATCTTTTCTGCCGGTCATGCTGGGAGCCAACAGCACCGGCTCCTGACGTGGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000477392.1 |
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| CDS CAA 72 bp | GCACAGGGCAAGTCCCCACGTCAGGAGCCGGTGCTGTaGGCTCCCAGCATGACCGGCAGAAAAGATGGGAGC | + |
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Preference number: 6 (lower is better) Translates to: AQGKSPRQEPVL*APSMTGRKDGS Trigger: GCTCCCATCTTTTCTGCCGGTCATGCTGGGAGCCAACAGCACCGGCTCCTGACGTGGGGACTTGCCCTGTGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000477392.1 |
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| CDS CAA 90 bp | CACGTCATGGCACAGGGCAAGTCCCCACGTCAGGAGCCGGTGCTGTaGGCTCCCAGCATGACCGGCAGAAAAGATGGGAGCCTACACAGC | + |
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Preference number: 6 (lower is better) Translates to: HVMAQGKSPRQEPVL*APSMTGRKDGSLHS Trigger: GCTGTGTAGGCTCCCATCTTTTCTGCCGGTCATGCTGGGAGCCAACAGCACCGGCTCCTGACGTGGGGACTTGCCCTGTGCCATGACGTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000477392.1 |
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| CDS TCA 72 bp | GGCGGACTCCTCCCAGCTTCCCTGTGCTCTCTGCGCTaGGAAAAGCTCGCAGCTGAAGCGAATGAAGCCGTG | + |
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Preference number: 6 (lower is better) Translates to: GGLLPASLCSLR*EKLAAEANEAV Trigger: CACGGCTTCATTCGCTTCAGCTGCGAGCTTTTCTCAGCGCAGAGAGCACAGGGAAGCTGGGAGGAGTCCGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000477392.1 |
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| CDS GCA 72 bp | GCTCTCCACGACGTCAAACTAAACGGGTGCAGCATGTaGAAAGGGGCAGAGAGACTGAGCGGCCTCCCCACT | + |
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Preference number: 6 (lower is better) Translates to: ALHDVKLNGCSM*KGAERLSGLPT Trigger: AGTGGGGAGGCCGCTCAGTCTCTCTGCCCCTTTGCACATGCTGCACCCGTTTAGTTTGACGTCGTGGAGAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000477392.1 ENST00000486954.1 |
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| CDS CCA 72 bp | GCTGCTTCATCAGGCTGTTGTGGGAACCGAACGATGTaGCAGAGAGTCCAGCTCAGCTTCCTACCGTTCCAC | + |
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Preference number: 6 (lower is better) Translates to: AASSGCCGNRTM*QRVQLSFLPFH Trigger: GTGGAACGGTAGGAAGCTGAGCTGGACTCTCTGCCACATCGTTCGGTTCCCACAACAGCCTGATGAAGCAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000477392.1 |
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| CDS CCA 72 bp | GACCCCATTTCAGGCTGTTGTGGGAACCGAACGATGTaGCAGAGAGTCCAGCTCAGCTTCCTACCGTTCCAC | + |
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Preference number: 6 (lower is better) Translates to: DPISGCCGNRTM*QRVQLSFLPFH Trigger: GTGGAACGGTAGGAAGCTGAGCTGGACTCTCTGCCACATCGTTCGGTTCCCACAACAGCCTGAAATGGGGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000486954.1 |
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| CDS CCA 72 bp | CTGGGCAACAAGGCAAGACCCCATTTCAGGCTGTTGTaGGAACCGAACGATGTGGCAGAGAGTCCAGCTCAG | + |
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Preference number: 6 (lower is better) Translates to: LGNKARPHFRLL*EPNDVAESPAQ Trigger: CTGAGCTGGACTCTCTGCCACATCGTTCGGTTCCCACAACAGCCTGAAATGGGGTCTTGCCTTGTTGCCCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000486954.1 |
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| CDS CCA 72 bp | CCCCAAACTTTTAAACCCTTTCACACAGCCCGTGCCTaGAGGAGCTCTCCACGACGTCAAACTAAACGGGTG | + |
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Preference number: 6 (lower is better) Translates to: PQTFKPFHTARA*RSSPRRQTKRV Trigger: CACCCGTTTAGTTTGACGTCGTGGAGAGCTCCTCCAGGCACGGGCTGTGTGAAAGGGTTTAAAAGTTTGGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000477392.1 ENST00000486954.1 |
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| CDS GCA 72 bp | TTTCTGATTCTCATAAAGGGCAGTGGTCACCCAGGCTaGCTGGATGTGGAGCAGCCTGGCATCACAGTACTT | + |
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Preference number: 6 (lower is better) Translates to: FLILIKGSGHPG*LDVEQPGITVL Trigger: AAGTACTGTGATGCCAGGCTGCTCCACATCCAGGCAGCCTGGGTGACCACTGCCCTTTATGAGAATCAGAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000477392.1 |
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| CDS TCA 72 bp | AGGGCCACTGAAAGGCCAGTCCTCTTCAGCCTGCAATaGGAGAGATTGAAAGTGGAAGCAGGTCTAAGCTCA | + |
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Preference number: 6 (lower is better) Translates to: RATERPVLFSLQ*ERLKVEAGLSS Trigger: TGAGCTTAGACCTGCTTCCACTTTCAATCTCTCTCATTGCAGGCTGAAGAGGACTGGCCTTTCAGTGGCCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000477392.1 |
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| CDS GCA 72 bp | TTCTTAGCTGGCAGCAAAGGCCTAAAAGAGTCATGTTaGTTCTGGAAGATTCCATCTAGGCGGACTCCTCCC | + |
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Preference number: 6 (lower is better) Translates to: FLAGSKGLKESC*FWKIPSRRTPP Trigger: GGGAGGAGTCCGCCTAGATGGAATCTTCCAGAAGCAACATGACTCTTTTAGGCCTTTGCTGCCAGCTAAGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000477392.1 |
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| CDS GCA 72 bp | CCATTTCTGACCAGTGGATCCTTCCGCTTCTTACGCTaGCAACTGCTAAGATGTGACCCGTTAACCAAAATG | + |
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Preference number: 6 (lower is better) Translates to: PFLTSGSFRFLR*QLLRCDPLTKM Trigger: CATTTTGGTTAACGGGTCACATCTTAGCAGTTGGCAGCGTAAGAAGCGGAAGGATCCACTGGTCAGAAATGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000477392.1 ENST00000486954.1 |
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| CDS GCA 72 bp | TTAACACGATTGACCCAGTTGCCACATCAAAGGGAGTaGTATTCACTGCAGACATCTTTGTTATTTTGGAAA | + |
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Preference number: 6 (lower is better) Translates to: LTRLTQLPHQRE*YSLQTSLLFWK Trigger: TTTCCAAAATAACAAAGATGTCTGCAGTGAATAGCACTCCCTTTGATGTGGCAACTGGGTCAATCGTGTTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000477392.1 |
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| CDS CAA 72 bp | TTTCTTAAAAAGATGAATTCACAGTTGTTAACACGATaGACCCAGTTGCCACATCAAAGGGAGTGCTATTCA | + |
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Preference number: 6 (lower is better) Translates to: FLKKMNSQLLTR*TQLPHQRECYS Trigger: TGAATAGCACTCCCTTTGATGTGGCAACTGGGTCAATCGTGTTAACAACTGTGAATTCATCTTTTTAAGAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000477392.1 |
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| CDS CAA 90 bp | ATAAAAGAATTTCTTAAAAAGATGAATTCACAGTTGTTAACACGATaGACCCAGTTGCCACATCAAAGGGAGTGCTATTCACTGCAGACA | + |
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Preference number: 6 (lower is better) Translates to: IKEFLKKMNSQLLTR*TQLPHQRECYSLQT Trigger: TGTCTGCAGTGAATAGCACTCCCTTTGATGTGGCAACTGGGTCAATCGTGTTAACAACTGTGAATTCATCTTTTTAAGAAATTCTTTTAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000477392.1 |
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