Pregenerated sensors for LINC00992 (Homo sapiens)
Ensembl gene IDs: ENSG00000248663Ensembl transcript IDs: ENST00000504107.1, ENST00000514186.5
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CGAGAAGCAAAGTGCCAGCATCTGCCTCTGATGAGGGCCTATGGCTaGTTCCACTCATGTCAGAAGGAAAAGGAAGCATCCTCTTCATTC | + |
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Preference number: 5 (lower is better) Translates to: REAKCQHLPLMRAYG*FHSCQKEKEASSSF Trigger: GAATGAAGAGGATGCTTCCTTTTCCTTCTGACATGAGTGGAACCAGCCATAGGCCCTCATCAGAGGCAGATGCTGGCACTTTGCTTCTCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000514186.5 |
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| CDS CCA 90 bp | TGTACGAGAAGCAAAGTGCCAGCATCTGCCTCTGATGAGGGCCTATaGCTGGTTCCACTCATGTCAGAAGGAAAAGGAAGCATCCTCTTC | + |
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Preference number: 5 (lower is better) Translates to: CTRSKVPASASDEGL*LVPLMSEGKGSILF Trigger: GAAGAGGATGCTTCCTTTTCCTTCTGACATGAGTGGAACCAGCCATAGGCCCTCATCAGAGGCAGATGCTGGCACTTTGCTTCTCGTACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000514186.5 |
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| CDS CCA 90 bp | AGCTGTCTGTTTTCGGCTGAGGGAAGAGACTCCTCCCTGAAACCATaGTACAGGTGTTTTCTGTGGCTCTCAGCTTCATTGCAGCTTGAA | + |
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Preference number: 5 (lower is better) Translates to: SCLFSAEGRDSSLKP*YRCFLWLSASLQLE Trigger: TTCAAGCTGCAATGAAGCTGAGAGCCACAGAAAACACCTGTACCATGGTTTCAGGGAGGAGTCTCTTCCCTCAGCCGAAAACAGACAGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000504107.1 |
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| CDS GCA 90 bp | TTAAATACATTATCCAAGAGTATTAACTGCCGAGTCCGACCTTCTTaGACCATAGGCAGAACCCCTTCCTCTCTCCACACTGAGTGGCAG | + |
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Preference number: 5 (lower is better) Translates to: LNTLSKSINCRVRPS*TIGRTPSSLHTEWQ Trigger: CTGCCACTCAGTGTGGAGAGAGGAAGGGGTTCTGCCTATGGTGCAAGAAGGTCGGACTCGGCAGTTAATACTCTTGGATAATGTATTTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000504107.1 |
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| CDS TCA 90 bp | ATCCTCTTCATTCAAAACTGGTTTTCTGCCAATGTTTCCTCTCAGTaGAAGGTATTGCCATCAATTCAGCCATTCTATCAGAAACCTGGG | + |
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Preference number: 5 (lower is better) Translates to: ILFIQNWFSANVSSQ*KVLPSIQPFYQKPG Trigger: CCCAGGTTTCTGATAGAATGGCTGAATTGATGGCAATACCTTTCACTGAGAGGAAACATTGGCAGAAAACCAGTTTTGAATGAAGAGGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000514186.5 |
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| CDS CCA 90 bp | TCAGTGAAAGGTATTGCCATCAATTCAGCCATTCTATCAGAAACCTaGGAGTCAAGCTTGATACCTCTCTCTAATTCACCTATACATTGC | + |
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Preference number: 5 (lower is better) Translates to: SVKGIAINSAILSET*ESSLIPLSNSPIHC Trigger: GCAATGTATAGGTGAATTAGAGAGAGGTATCAAGCTTGACTCCCAGGTTTCTGATAGAATGGCTGAATTGATGGCAATACCTTTCACTGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000514186.5 |
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| CDS CCA 72 bp | ACCATAGGCAGAACCCCTTCCTCTCTCCACACTGAGTaGCAGCGTCCTCGCAGTGGAGAACAGATGACCAGC | + |
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Preference number: 6 (lower is better) Translates to: TIGRTPSSLHTE*QRPRSGEQMTS Trigger: GCTGGTCATCTGTTCTCCACTGCGAGGACGCTGCCACTCAGTGTGGAGAGAGGAAGGGGTTCTGCCTATGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000504107.1 |
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| CDS TCA 72 bp | TTGCACCATAGGCAGAACCCCTTCCTCTCTCCACACTaGGTGGCAGCGTCCTCGCAGTGGAGAACAGATGAC | + |
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Preference number: 6 (lower is better) Translates to: LHHRQNPFLSPH*VAASSQWRTDD Trigger: GTCATCTGTTCTCCACTGCGAGGACGCTGCCACTCAGTGTGGAGAGAGGAAGGGGTTCTGCCTATGGTGCAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000504107.1 |
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| CDS TCA 72 bp | GCTGTCTGTTTTCGGCTGAGGGAAGAGACTCCTCCCTaGAACCATGGTACAGGTGTTTTCTGTGGCTCTCAG | + |
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Preference number: 6 (lower is better) Translates to: AVCFRLREETPP*NHGTGVFCGSQ Trigger: CTGAGAGCCACAGAAAACACCTGTACCATGGTTTCAGGGAGGAGTCTCTTCCCTCAGCCGAAAACAGACAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000504107.1 |
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| CDS CCA 72 bp | AAGTGCCAGCATCTGCCTCTGATGAGGGCCTATGGCTaGTTCCACTCATGTCAGAAGGAAAAGGAAGCATCC | + |
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Preference number: 6 (lower is better) Translates to: KCQHLPLMRAYG*FHSCQKEKEAS Trigger: GGATGCTTCCTTTTCCTTCTGACATGAGTGGAACCAGCCATAGGCCCTCATCAGAGGCAGATGCTGGCACTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000514186.5 |
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| CDS CCA 72 bp | AGCAAAGTGCCAGCATCTGCCTCTGATGAGGGCCTATaGCTGGTTCCACTCATGTCAGAAGGAAAAGGAAGC | + |
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Preference number: 6 (lower is better) Translates to: SKVPASASDEGL*LVPLMSEGKGS Trigger: GCTTCCTTTTCCTTCTGACATGAGTGGAACCAGCCATAGGCCCTCATCAGAGGCAGATGCTGGCACTTTGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000514186.5 |
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| CDS GCA 72 bp | TTATCCAAGAGTATTAACTGCCGAGTCCGACCTTCTTaGACCATAGGCAGAACCCCTTCCTCTCTCCACACT | + |
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Preference number: 6 (lower is better) Translates to: LSKSINCRVRPS*TIGRTPSSLHT Trigger: AGTGTGGAGAGAGGAAGGGGTTCTGCCTATGGTGCAAGAAGGTCGGACTCGGCAGTTAATACTCTTGGATAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000504107.1 |
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| CDS CCA 72 bp | TTTTCGGCTGAGGGAAGAGACTCCTCCCTGAAACCATaGTACAGGTGTTTTCTGTGGCTCTCAGCTTCATTG | + |
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Preference number: 6 (lower is better) Translates to: FSAEGRDSSLKP*YRCFLWLSASL Trigger: CAATGAAGCTGAGAGCCACAGAAAACACCTGTACCATGGTTTCAGGGAGGAGTCTCTTCCCTCAGCCGAAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000504107.1 |
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| CDS GCA 72 bp | GGTTTTCTGCCAATGTTTCCTCTCAGTGAAAGGTATTaGCATCAATTCAGCCATTCTATCAGAAACCTGGGA | + |
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Preference number: 6 (lower is better) Translates to: GFLPMFPLSERY*HQFSHSIRNLG Trigger: TCCCAGGTTTCTGATAGAATGGCTGAATTGATGGCAATACCTTTCACTGAGAGGAAACATTGGCAGAAAACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000514186.5 |
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| CDS TCA 72 bp | ATTCAGCCATTCTATCAGAAACCTGGGAGTCAAGCTTaGTACCTCTCTCTAATTCACCTATACATTGCATCT | + |
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Preference number: 6 (lower is better) Translates to: IQPFYQKPGSQA*YLSLIHLYIAS Trigger: AGATGCAATGTATAGGTGAATTAGAGAGAGGTATCAAGCTTGACTCCCAGGTTTCTGATAGAATGGCTGAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000514186.5 |
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| CDS CAA 72 bp | AATTCAGCCATTCTATCAGAAACCTGGGAGTCAAGCTaGATACCTCTCTCTAATTCACCTATACATTGCATC | + |
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Preference number: 6 (lower is better) Translates to: NSAILSETWESS*IPLSNSPIHCI Trigger: GATGCAATGTATAGGTGAATTAGAGAGAGGTATCAAGCTTGACTCCCAGGTTTCTGATAGAATGGCTGAATT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000514186.5 |
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| CDS TCA 72 bp | ATTCAAAACTGGTTTTCTGCCAATGTTTCCTCTCAGTaGAAGGTATTGCCATCAATTCAGCCATTCTATCAG | + |
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Preference number: 6 (lower is better) Translates to: IQNWFSANVSSQ*KVLPSIQPFYQ Trigger: CTGATAGAATGGCTGAATTGATGGCAATACCTTTCACTGAGAGGAAACATTGGCAGAAAACCAGTTTTGAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000514186.5 |
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| CDS GCA 72 bp | TCAAGCTTGATACCTCTCTCTAATTCACCTATACATTaGATCTATTACCATGTCCTGTCACTTTTGTTTAAT | + |
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Preference number: 6 (lower is better) Translates to: SSLIPLSNSPIH*IYYHVLSLLFN Trigger: ATTAAACAAAAGTGACAGGACATGGTAATAGATGCAATGTATAGGTGAATTAGAGAGAGGTATCAAGCTTGA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000514186.5 |
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