RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LINC00987 (Homo sapiens)

Ensembl gene IDs: ENSG00000237248

Ensembl transcript IDs: ENST00000427111.4, ENST00000538219.1

Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp CATCCCTTCATAAACTTGTGGTTGGGTGTGGGGGACAGGTCGTTGTaGAGCTGGAGGTCTCTTCCGCTTTCCTGGCTGTTCCAACAGAGA +
Preference number: 5 (lower is better)
Translates to: HPFINLWLGVGDRSL*SWRSLPLSWLFQQR
Trigger: TCTCTGTTGGAACAGCCAGGAAAGCGGAAGAGACCTCCAGCTGCACAACGACCTGTCCCCCACACCCAACCACAAGTTTATGAAGGGATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000427111.4
CDS CCA 90 bp TTCATAAACTTGTGGTTGGGTGTGGGGGACAGGTCGTTGTGCAGCTaGAGGTCTCTTCCGCTTTCCTGGCTGTTCCAACAGAGAAGAATG +
Preference number: 5 (lower is better)
Translates to: FINLWLGVGDRSLCS*RSLPLSWLFQQRRM
Trigger: CATTCTTCTCTGTTGGAACAGCCAGGAAAGCGGAAGAGACCTCCAGCTGCACAACGACCTGTCCCCCACACCCAACCACAAGTTTATGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000427111.4
CDS TCA 90 bp TGGGCGGAAAACCGTGTCCTGGGTTGTGACTCCGAAGTCACTGGGTaGGTAGTAATGCTATTAGCAAATTCCACTTCGTGTGCTTGGATG +
Preference number: 5 (lower is better)
Translates to: WAENRVLGCDSEVTG*VVMLLANSTSCAWM
Trigger: CATCCAAGCACACGAAGTGGAATTTGCTAATAGCATTACTACTCACCCAGTGACTTCGGAGTCACAACCCAGGACACGGTTTTCCGCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427111.4
CDS CCA 90 bp GTGTCTGATAGAGCTGACCATATTTGCACAGCTTCTCAGCGCCTCTaGACTCATGGACATTGTCCCTCAGTCCATTTACCTGATGCACAG +
Preference number: 5 (lower is better)
Translates to: VSDRADHICTASQRL*THGHCPSVHLPDAQ
Trigger: CTGTGCATCAGGTAAATGGACTGAGGGACAATGTCCATGAGTCCAGAGGCGCTGAGAAGCTGTGCAAATATGGTCAGCTCTATCAGACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000427111.4
CDS TCA 90 bp TCAGCGCCTCTGGACTCATGGACATTGTCCCTCAGTCCATTTACCTaGTGCACAGAGCATCTTTTGCAGTATTCATGCTGTTCTGCATCC +
Preference number: 5 (lower is better)
Translates to: SAPLDSWTLSLSPFT*CTEHLLQYSCCSAS
Trigger: GGATGCAGAACAGCATGAATACTGCAAAAGATGCTCTGTGCATCAGGTAAATGGACTGAGGGACAATGTCCATGAGTCCAGAGGCGCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427111.4
CDS TCA 90 bp CTCACTGTGTCTGTAGAAATGGGCGGAAAACCGTGTCCTGGGTTGTaGCTCCGAAGTCACTGGGTGAGTAGTAATGCTATTAGCAAATTC +
Preference number: 5 (lower is better)
Translates to: LTVSVEMGGKPCPGL*LRSHWVSSNAISKF
Trigger: GAATTTGCTAATAGCATTACTACTCACCCAGTGACTTCGGAGTCACAACCCAGGACACGGTTTTCCGCCCATTTCTACAGACACAGTGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427111.4
CDS CCA 90 bp CGGCTTTCAGCACATCTTATTCGTTCTAGCAGTGGGGTCTCTTTCTaGTGGGTCAGTATCCTCTTCACACCCTTCAGGAAAATATGTCGT +
Preference number: 5 (lower is better)
Translates to: RLSAHLIRSSSGVSF*WVSILFTPFRKICR
Trigger: ACGACATATTTTCCTGAAGGGTGTGAAGAGGATACTGACCCACCAGAAAGAGACCCCACTGCTAGAACGAATAAGATGTGCTGAAAGCCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000538219.1
CDS GCA 90 bp TTCAAACACCTAAACTACAAAGTGTCTGATAGAGCTGACCATATTTaGACAGCTTCTCAGCGCCTCTGGACTCATGGACATTGTCCCTCA +
Preference number: 5 (lower is better)
Translates to: FKHLNYKVSDRADHI*TASQRLWTHGHCPS
Trigger: TGAGGGACAATGTCCATGAGTCCAGAGGCGCTGAGAAGCTGTGCAAATATGGTCAGCTCTATCAGACACTTTGTAGTTTAGGTGTTTGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000427111.4
CDS CCA 90 bp CTTTCAGCACATCTTATTCGTTCTAGCAGTGGGGTCTCTTTCTGGTaGGTCAGTATCCTCTTCACACCCTTCAGGAAAATATGTCGTTCA +
Preference number: 5 (lower is better)
Translates to: LSAHLIRSSSGVSFW*VSILFTPFRKICRS
Trigger: TGAACGACATATTTTCCTGAAGGGTGTGAAGAGGATACTGACCCACCAGAAAGAGACCCCACTGCTAGAACGAATAAGATGTGCTGAAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000538219.1
CDS TCA 90 bp AACTGCTTGTCCACCTGCATTCGGGTAAGGACACTTCTCTGGAAGTaGATGAGAATAGAAGATAGTCACCATTCATTACCAGGTCTCCTA +
Preference number: 5 (lower is better)
Translates to: NCLSTCIRVRTLLWK*MRIEDSHHSLPGLL
Trigger: TAGGAGACCTGGTAATGAATGGTGACTATCTTCTATTCTCATTCACTTCCAGAGAAGTGTCCTTACCCGAATGCAGGTGGACAAGCAGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000427111.4
CDS GCA 90 bp GGACATTGTCCCTCAGTCCATTTACCTGATGCACAGAGCATCTTTTaGAGTATTCATGCTGTTCTGCATCCCTTCATAAACTTGTGGTTG +
Preference number: 5 (lower is better)
Translates to: GHCPSVHLPDAQSIF*SIHAVLHPFINLWL
Trigger: CAACCACAAGTTTATGAAGGGATGCAGAACAGCATGAATACTGCAAAAGATGCTCTGTGCATCAGGTAAATGGACTGAGGGACAATGTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427111.4
CDS TCA 90 bp TGTTGCCTGGAATTTAGTTTAGGAGAGGGTTTGAATCCTGCTGTATaGCTGATGTTATCCTGGATTCCTGATCCTTTTAGTTCTGCTCTG +
Preference number: 5 (lower is better)
Translates to: CCLEFSLGEGLNPAV*LMLSWIPDPFSSAL
Trigger: CAGAGCAGAACTAAAAGGATCAGGAATCCAGGATAACATCAGTCATACAGCAGGATTCAAACCCTCTCCTAAACTAAATTCCAGGCAACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427111.4
CDS GCA 90 bp AGTCACTGGGTGAGTAGTAATGCTATTAGCAAATTCCACTTCGTGTaGTTGGATGATTTGTTTTCTGCACTGACCCCAATACACACTTTT +
Preference number: 5 (lower is better)
Translates to: SHWVSSNAISKFHFV*LDDLFSALTPIHTF
Trigger: AAAAGTGTGTATTGGGGTCAGTGCAGAAAACAAATCATCCAAGCACACGAAGTGGAATTTGCTAATAGCATTACTACTCACCCAGTGACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000427111.4
CDS CCA 72 bp TTGTGGTTGGGTGTGGGGGACAGGTCGTTGTGCAGCTaGAGGTCTCTTCCGCTTTCCTGGCTGTTCCAACAG +
Preference number: 6 (lower is better)
Translates to: LWLGVGDRSLCS*RSLPLSWLFQQ
Trigger: CTGTTGGAACAGCCAGGAAAGCGGAAGAGACCTCCAGCTGCACAACGACCTGTCCCCCACACCCAACCACAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000427111.4
CDS GCA 72 bp ATAAACTTGTGGTTGGGTGTGGGGGACAGGTCGTTGTaGAGCTGGAGGTCTCTTCCGCTTTCCTGGCTGTTC +
Preference number: 6 (lower is better)
Translates to: INLWLGVGDRSL*SWRSLPLSWLF
Trigger: GAACAGCCAGGAAAGCGGAAGAGACCTCCAGCTGCACAACGACCTGTCCCCCACACCCAACCACAAGTTTAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000427111.4
CDS CCA 72 bp GGCCAGCGCATTCTGCTTGTCTGGAACCACAGGGTTTaGCCTCTCTCCTATCGTGTCTCTTCAAGCCTTCCA +
Preference number: 6 (lower is better)
Translates to: GQRILLVWNHRV*PLSYRVSSSLP
Trigger: TGGAAGGCTTGAAGAGACACGATAGGAGAGAGGCCAAACCCTGTGGTTCCAGACAAGCAGAATGCGCTGGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000427111.4
CDS CAA 72 bp AGGCCAGCGCATTCTGCTTGTCTGGAACCACAGGGTTaGGCCTCTCTCCTATCGTGTCTCTTCAAGCCTTCC +
Preference number: 6 (lower is better)
Translates to: RPAHSACLEPQG*ASLLSCLFKPS
Trigger: GGAAGGCTTGAAGAGACACGATAGGAGAGAGGCCAAACCCTGTGGTTCCAGACAAGCAGAATGCGCTGGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000427111.4
CDS CAA 72 bp ATTCATGCTGTTCTGCATCCCTTCATAAACTTGTGGTaGGGTGTGGGGGACAGGTCGTTGTGCAGCTGGAGG +
Preference number: 6 (lower is better)
Translates to: IHAVLHPFINLW*GVGDRSLCSWR
Trigger: CCTCCAGCTGCACAACGACCTGTCCCCCACACCCAACCACAAGTTTATGAAGGGATGCAGAACAGCATGAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000427111.4
CDS CAA 90 bp TTTTGCAGTATTCATGCTGTTCTGCATCCCTTCATAAACTTGTGGTaGGGTGTGGGGGACAGGTCGTTGTGCAGCTGGAGGTCTCTTCCG +
Preference number: 6 (lower is better)
Translates to: FCSIHAVLHPFINLW*GVGDRSLCSWRSLP
Trigger: CGGAAGAGACCTCCAGCTGCACAACGACCTGTCCCCCACACCCAACCACAAGTTTATGAAGGGATGCAGAACAGCATGAATACTGCAAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000427111.4
CDS CCA 72 bp AGAGCTGACCATATTTGCACAGCTTCTCAGCGCCTCTaGACTCATGGACATTGTCCCTCAGTCCATTTACCT +
Preference number: 6 (lower is better)
Translates to: RADHICTASQRL*THGHCPSVHLP
Trigger: AGGTAAATGGACTGAGGGACAATGTCCATGAGTCCAGAGGCGCTGAGAAGCTGTGCAAATATGGTCAGCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000427111.4
CDS TCA 72 bp TCTGTAGAAATGGGCGGAAAACCGTGTCCTGGGTTGTaGCTCCGAAGTCACTGGGTGAGTAGTAATGCTATT +
Preference number: 6 (lower is better)
Translates to: SVEMGGKPCPGL*LRSHWVSSNAI
Trigger: AATAGCATTACTACTCACCCAGTGACTTCGGAGTCACAACCCAGGACACGGTTTTCCGCCCATTTCTACAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427111.4
CDS CCA 72 bp GCACATCTTATTCGTTCTAGCAGTGGGGTCTCTTTCTaGTGGGTCAGTATCCTCTTCACACCCTTCAGGAAA +
Preference number: 6 (lower is better)
Translates to: AHLIRSSSGVSF*WVSILFTPFRK
Trigger: TTTCCTGAAGGGTGTGAAGAGGATACTGACCCACCAGAAAGAGACCCCACTGCTAGAACGAATAAGATGTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000538219.1
CDS TCA 72 bp AACCGTGTCCTGGGTTGTGACTCCGAAGTCACTGGGTaGGTAGTAATGCTATTAGCAAATTCCACTTCGTGT +
Preference number: 6 (lower is better)
Translates to: NRVLGCDSEVTG*VVMLLANSTSC
Trigger: ACACGAAGTGGAATTTGCTAATAGCATTACTACTCACCCAGTGACTTCGGAGTCACAACCCAGGACACGGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000427111.4
CDS GCA 72 bp CTAAACTACAAAGTGTCTGATAGAGCTGACCATATTTaGACAGCTTCTCAGCGCCTCTGGACTCATGGACAT +
Preference number: 6 (lower is better)
Translates to: LNYKVSDRADHI*TASQRLWTHGH
Trigger: ATGTCCATGAGTCCAGAGGCGCTGAGAAGCTGTGCAAATATGGTCAGCTCTATCAGACACTTTGTAGTTTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000427111.4
CDS CCA 72 bp CATCTTATTCGTTCTAGCAGTGGGGTCTCTTTCTGGTaGGTCAGTATCCTCTTCACACCCTTCAGGAAAATA +
Preference number: 6 (lower is better)
Translates to: HLIRSSSGVSFW*VSILFTPFRKI
Trigger: TATTTTCCTGAAGGGTGTGAAGAGGATACTGACCCACCAGAAAGAGACCCCACTGCTAGAACGAATAAGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000538219.1
CDS CAA 90 bp GCCGTAGAAATAATGTACCCAATGATCGAAGAAGAACCTCAGATATaGCAAGTGAAAGAGATAGTCCGGAAGTACTTCCCTGAGACCTGG +
Preference number: 6 (lower is better)
Translates to: AVEIMYPMIEEEPQI*QVKEIVRKYFPETW
Trigger: CCAGGTCTCAGGGAAGTACTTCCGGACTATCTCTTTCACTTGCAATATCTGAGGTTCTTCTTCGATCATTGGGTACATTATTTCTACGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000427111.4
CDS TCA 72 bp TTTTGGAGCAGACCTGGTACTAAGAGAAAAGGTACCTaGCAGGCCCAAGGTGGTAAGGTTATATTCATTCAG +
Preference number: 6 (lower is better)
Translates to: FWSRPGTKRKGT*QAQGGKVIFIQ
Trigger: CTGAATGAATATAACCTTACCACCTTGGGCCTGTCAGGTACCTTTTCTCTTAGTACCAGGTCTGCTCCAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000427111.4
CDS GCA 72 bp CCCTCAGTCCATTTACCTGATGCACAGAGCATCTTTTaGAGTATTCATGCTGTTCTGCATCCCTTCATAAAC +
Preference number: 6 (lower is better)
Translates to: PSVHLPDAQSIF*SIHAVLHPFIN
Trigger: GTTTATGAAGGGATGCAGAACAGCATGAATACTGCAAAAGATGCTCTGTGCATCAGGTAAATGGACTGAGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427111.4
CDS TCA 72 bp TCCACCTGCATTCGGGTAAGGACACTTCTCTGGAAGTaGATGAGAATAGAAGATAGTCACCATTCATTACCA +
Preference number: 6 (lower is better)
Translates to: STCIRVRTLLWK*MRIEDSHHSLP
Trigger: TGGTAATGAATGGTGACTATCTTCTATTCTCATTCACTTCCAGAGAAGTGTCCTTACCCGAATGCAGGTGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000427111.4