Pregenerated sensors for LINC00987 (Homo sapiens)
Ensembl gene IDs: ENSG00000237248Ensembl transcript IDs: ENST00000427111.4, ENST00000538219.1
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS GCA 90 bp | CATCCCTTCATAAACTTGTGGTTGGGTGTGGGGGACAGGTCGTTGTaGAGCTGGAGGTCTCTTCCGCTTTCCTGGCTGTTCCAACAGAGA | + |
Preference number: 5 (lower is better) Translates to: HPFINLWLGVGDRSL*SWRSLPLSWLFQQR Trigger: TCTCTGTTGGAACAGCCAGGAAAGCGGAAGAGACCTCCAGCTGCACAACGACCTGTCCCCCACACCCAACCACAAGTTTATGAAGGGATG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000427111.4 |
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CDS CCA 90 bp | TTCATAAACTTGTGGTTGGGTGTGGGGGACAGGTCGTTGTGCAGCTaGAGGTCTCTTCCGCTTTCCTGGCTGTTCCAACAGAGAAGAATG | + |
Preference number: 5 (lower is better) Translates to: FINLWLGVGDRSLCS*RSLPLSWLFQQRRM Trigger: CATTCTTCTCTGTTGGAACAGCCAGGAAAGCGGAAGAGACCTCCAGCTGCACAACGACCTGTCCCCCACACCCAACCACAAGTTTATGAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000427111.4 |
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CDS TCA 90 bp | TGGGCGGAAAACCGTGTCCTGGGTTGTGACTCCGAAGTCACTGGGTaGGTAGTAATGCTATTAGCAAATTCCACTTCGTGTGCTTGGATG | + |
Preference number: 5 (lower is better) Translates to: WAENRVLGCDSEVTG*VVMLLANSTSCAWM Trigger: CATCCAAGCACACGAAGTGGAATTTGCTAATAGCATTACTACTCACCCAGTGACTTCGGAGTCACAACCCAGGACACGGTTTTCCGCCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000427111.4 |
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CDS CCA 90 bp | GTGTCTGATAGAGCTGACCATATTTGCACAGCTTCTCAGCGCCTCTaGACTCATGGACATTGTCCCTCAGTCCATTTACCTGATGCACAG | + |
Preference number: 5 (lower is better) Translates to: VSDRADHICTASQRL*THGHCPSVHLPDAQ Trigger: CTGTGCATCAGGTAAATGGACTGAGGGACAATGTCCATGAGTCCAGAGGCGCTGAGAAGCTGTGCAAATATGGTCAGCTCTATCAGACAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000427111.4 |
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CDS TCA 90 bp | TCAGCGCCTCTGGACTCATGGACATTGTCCCTCAGTCCATTTACCTaGTGCACAGAGCATCTTTTGCAGTATTCATGCTGTTCTGCATCC | + |
Preference number: 5 (lower is better) Translates to: SAPLDSWTLSLSPFT*CTEHLLQYSCCSAS Trigger: GGATGCAGAACAGCATGAATACTGCAAAAGATGCTCTGTGCATCAGGTAAATGGACTGAGGGACAATGTCCATGAGTCCAGAGGCGCTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000427111.4 |
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CDS TCA 90 bp | CTCACTGTGTCTGTAGAAATGGGCGGAAAACCGTGTCCTGGGTTGTaGCTCCGAAGTCACTGGGTGAGTAGTAATGCTATTAGCAAATTC | + |
Preference number: 5 (lower is better) Translates to: LTVSVEMGGKPCPGL*LRSHWVSSNAISKF Trigger: GAATTTGCTAATAGCATTACTACTCACCCAGTGACTTCGGAGTCACAACCCAGGACACGGTTTTCCGCCCATTTCTACAGACACAGTGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000427111.4 |
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CDS CCA 90 bp | CGGCTTTCAGCACATCTTATTCGTTCTAGCAGTGGGGTCTCTTTCTaGTGGGTCAGTATCCTCTTCACACCCTTCAGGAAAATATGTCGT | + |
Preference number: 5 (lower is better) Translates to: RLSAHLIRSSSGVSF*WVSILFTPFRKICR Trigger: ACGACATATTTTCCTGAAGGGTGTGAAGAGGATACTGACCCACCAGAAAGAGACCCCACTGCTAGAACGAATAAGATGTGCTGAAAGCCG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000538219.1 |
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CDS GCA 90 bp | TTCAAACACCTAAACTACAAAGTGTCTGATAGAGCTGACCATATTTaGACAGCTTCTCAGCGCCTCTGGACTCATGGACATTGTCCCTCA | + |
Preference number: 5 (lower is better) Translates to: FKHLNYKVSDRADHI*TASQRLWTHGHCPS Trigger: TGAGGGACAATGTCCATGAGTCCAGAGGCGCTGAGAAGCTGTGCAAATATGGTCAGCTCTATCAGACACTTTGTAGTTTAGGTGTTTGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000427111.4 |
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CDS CCA 90 bp | CTTTCAGCACATCTTATTCGTTCTAGCAGTGGGGTCTCTTTCTGGTaGGTCAGTATCCTCTTCACACCCTTCAGGAAAATATGTCGTTCA | + |
Preference number: 5 (lower is better) Translates to: LSAHLIRSSSGVSFW*VSILFTPFRKICRS Trigger: TGAACGACATATTTTCCTGAAGGGTGTGAAGAGGATACTGACCCACCAGAAAGAGACCCCACTGCTAGAACGAATAAGATGTGCTGAAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000538219.1 |
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CDS TCA 90 bp | AACTGCTTGTCCACCTGCATTCGGGTAAGGACACTTCTCTGGAAGTaGATGAGAATAGAAGATAGTCACCATTCATTACCAGGTCTCCTA | + |
Preference number: 5 (lower is better) Translates to: NCLSTCIRVRTLLWK*MRIEDSHHSLPGLL Trigger: TAGGAGACCTGGTAATGAATGGTGACTATCTTCTATTCTCATTCACTTCCAGAGAAGTGTCCTTACCCGAATGCAGGTGGACAAGCAGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000427111.4 |
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CDS GCA 90 bp | GGACATTGTCCCTCAGTCCATTTACCTGATGCACAGAGCATCTTTTaGAGTATTCATGCTGTTCTGCATCCCTTCATAAACTTGTGGTTG | + |
Preference number: 5 (lower is better) Translates to: GHCPSVHLPDAQSIF*SIHAVLHPFINLWL Trigger: CAACCACAAGTTTATGAAGGGATGCAGAACAGCATGAATACTGCAAAAGATGCTCTGTGCATCAGGTAAATGGACTGAGGGACAATGTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000427111.4 |
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CDS TCA 90 bp | TGTTGCCTGGAATTTAGTTTAGGAGAGGGTTTGAATCCTGCTGTATaGCTGATGTTATCCTGGATTCCTGATCCTTTTAGTTCTGCTCTG | + |
Preference number: 5 (lower is better) Translates to: CCLEFSLGEGLNPAV*LMLSWIPDPFSSAL Trigger: CAGAGCAGAACTAAAAGGATCAGGAATCCAGGATAACATCAGTCATACAGCAGGATTCAAACCCTCTCCTAAACTAAATTCCAGGCAACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000427111.4 |
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CDS GCA 90 bp | AGTCACTGGGTGAGTAGTAATGCTATTAGCAAATTCCACTTCGTGTaGTTGGATGATTTGTTTTCTGCACTGACCCCAATACACACTTTT | + |
Preference number: 5 (lower is better) Translates to: SHWVSSNAISKFHFV*LDDLFSALTPIHTF Trigger: AAAAGTGTGTATTGGGGTCAGTGCAGAAAACAAATCATCCAAGCACACGAAGTGGAATTTGCTAATAGCATTACTACTCACCCAGTGACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000427111.4 |
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CDS CCA 72 bp | TTGTGGTTGGGTGTGGGGGACAGGTCGTTGTGCAGCTaGAGGTCTCTTCCGCTTTCCTGGCTGTTCCAACAG | + |
Preference number: 6 (lower is better) Translates to: LWLGVGDRSLCS*RSLPLSWLFQQ Trigger: CTGTTGGAACAGCCAGGAAAGCGGAAGAGACCTCCAGCTGCACAACGACCTGTCCCCCACACCCAACCACAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000427111.4 |
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CDS GCA 72 bp | ATAAACTTGTGGTTGGGTGTGGGGGACAGGTCGTTGTaGAGCTGGAGGTCTCTTCCGCTTTCCTGGCTGTTC | + |
Preference number: 6 (lower is better) Translates to: INLWLGVGDRSL*SWRSLPLSWLF Trigger: GAACAGCCAGGAAAGCGGAAGAGACCTCCAGCTGCACAACGACCTGTCCCCCACACCCAACCACAAGTTTAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000427111.4 |
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CDS CCA 72 bp | GGCCAGCGCATTCTGCTTGTCTGGAACCACAGGGTTTaGCCTCTCTCCTATCGTGTCTCTTCAAGCCTTCCA | + |
Preference number: 6 (lower is better) Translates to: GQRILLVWNHRV*PLSYRVSSSLP Trigger: TGGAAGGCTTGAAGAGACACGATAGGAGAGAGGCCAAACCCTGTGGTTCCAGACAAGCAGAATGCGCTGGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000427111.4 |
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CDS CAA 72 bp | AGGCCAGCGCATTCTGCTTGTCTGGAACCACAGGGTTaGGCCTCTCTCCTATCGTGTCTCTTCAAGCCTTCC | + |
Preference number: 6 (lower is better) Translates to: RPAHSACLEPQG*ASLLSCLFKPS Trigger: GGAAGGCTTGAAGAGACACGATAGGAGAGAGGCCAAACCCTGTGGTTCCAGACAAGCAGAATGCGCTGGCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000427111.4 |
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CDS CAA 72 bp | ATTCATGCTGTTCTGCATCCCTTCATAAACTTGTGGTaGGGTGTGGGGGACAGGTCGTTGTGCAGCTGGAGG | + |
Preference number: 6 (lower is better) Translates to: IHAVLHPFINLW*GVGDRSLCSWR Trigger: CCTCCAGCTGCACAACGACCTGTCCCCCACACCCAACCACAAGTTTATGAAGGGATGCAGAACAGCATGAAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000427111.4 |
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CDS CAA 90 bp | TTTTGCAGTATTCATGCTGTTCTGCATCCCTTCATAAACTTGTGGTaGGGTGTGGGGGACAGGTCGTTGTGCAGCTGGAGGTCTCTTCCG | + |
Preference number: 6 (lower is better) Translates to: FCSIHAVLHPFINLW*GVGDRSLCSWRSLP Trigger: CGGAAGAGACCTCCAGCTGCACAACGACCTGTCCCCCACACCCAACCACAAGTTTATGAAGGGATGCAGAACAGCATGAATACTGCAAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000427111.4 |
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CDS CCA 72 bp | AGAGCTGACCATATTTGCACAGCTTCTCAGCGCCTCTaGACTCATGGACATTGTCCCTCAGTCCATTTACCT | + |
Preference number: 6 (lower is better) Translates to: RADHICTASQRL*THGHCPSVHLP Trigger: AGGTAAATGGACTGAGGGACAATGTCCATGAGTCCAGAGGCGCTGAGAAGCTGTGCAAATATGGTCAGCTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000427111.4 |
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CDS TCA 72 bp | TCTGTAGAAATGGGCGGAAAACCGTGTCCTGGGTTGTaGCTCCGAAGTCACTGGGTGAGTAGTAATGCTATT | + |
Preference number: 6 (lower is better) Translates to: SVEMGGKPCPGL*LRSHWVSSNAI Trigger: AATAGCATTACTACTCACCCAGTGACTTCGGAGTCACAACCCAGGACACGGTTTTCCGCCCATTTCTACAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000427111.4 |
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CDS CCA 72 bp | GCACATCTTATTCGTTCTAGCAGTGGGGTCTCTTTCTaGTGGGTCAGTATCCTCTTCACACCCTTCAGGAAA | + |
Preference number: 6 (lower is better) Translates to: AHLIRSSSGVSF*WVSILFTPFRK Trigger: TTTCCTGAAGGGTGTGAAGAGGATACTGACCCACCAGAAAGAGACCCCACTGCTAGAACGAATAAGATGTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000538219.1 |
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CDS TCA 72 bp | AACCGTGTCCTGGGTTGTGACTCCGAAGTCACTGGGTaGGTAGTAATGCTATTAGCAAATTCCACTTCGTGT | + |
Preference number: 6 (lower is better) Translates to: NRVLGCDSEVTG*VVMLLANSTSC Trigger: ACACGAAGTGGAATTTGCTAATAGCATTACTACTCACCCAGTGACTTCGGAGTCACAACCCAGGACACGGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000427111.4 |
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CDS GCA 72 bp | CTAAACTACAAAGTGTCTGATAGAGCTGACCATATTTaGACAGCTTCTCAGCGCCTCTGGACTCATGGACAT | + |
Preference number: 6 (lower is better) Translates to: LNYKVSDRADHI*TASQRLWTHGH Trigger: ATGTCCATGAGTCCAGAGGCGCTGAGAAGCTGTGCAAATATGGTCAGCTCTATCAGACACTTTGTAGTTTAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000427111.4 |
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CDS CCA 72 bp | CATCTTATTCGTTCTAGCAGTGGGGTCTCTTTCTGGTaGGTCAGTATCCTCTTCACACCCTTCAGGAAAATA | + |
Preference number: 6 (lower is better) Translates to: HLIRSSSGVSFW*VSILFTPFRKI Trigger: TATTTTCCTGAAGGGTGTGAAGAGGATACTGACCCACCAGAAAGAGACCCCACTGCTAGAACGAATAAGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000538219.1 |
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CDS CAA 90 bp | GCCGTAGAAATAATGTACCCAATGATCGAAGAAGAACCTCAGATATaGCAAGTGAAAGAGATAGTCCGGAAGTACTTCCCTGAGACCTGG | + |
Preference number: 6 (lower is better) Translates to: AVEIMYPMIEEEPQI*QVKEIVRKYFPETW Trigger: CCAGGTCTCAGGGAAGTACTTCCGGACTATCTCTTTCACTTGCAATATCTGAGGTTCTTCTTCGATCATTGGGTACATTATTTCTACGGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000427111.4 |
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CDS TCA 72 bp | TTTTGGAGCAGACCTGGTACTAAGAGAAAAGGTACCTaGCAGGCCCAAGGTGGTAAGGTTATATTCATTCAG | + |
Preference number: 6 (lower is better) Translates to: FWSRPGTKRKGT*QAQGGKVIFIQ Trigger: CTGAATGAATATAACCTTACCACCTTGGGCCTGTCAGGTACCTTTTCTCTTAGTACCAGGTCTGCTCCAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000427111.4 |
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CDS GCA 72 bp | CCCTCAGTCCATTTACCTGATGCACAGAGCATCTTTTaGAGTATTCATGCTGTTCTGCATCCCTTCATAAAC | + |
Preference number: 6 (lower is better) Translates to: PSVHLPDAQSIF*SIHAVLHPFIN Trigger: GTTTATGAAGGGATGCAGAACAGCATGAATACTGCAAAAGATGCTCTGTGCATCAGGTAAATGGACTGAGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000427111.4 |
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CDS TCA 72 bp | TCCACCTGCATTCGGGTAAGGACACTTCTCTGGAAGTaGATGAGAATAGAAGATAGTCACCATTCATTACCA | + |
Preference number: 6 (lower is better) Translates to: STCIRVRTLLWK*MRIEDSHHSLP Trigger: TGGTAATGAATGGTGACTATCTTCTATTCTCATTCACTTCCAGAGAAGTGTCCTTACCCGAATGCAGGTGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000427111.4 |