Pregenerated sensors for LINC00973 (Homo sapiens)
Ensembl gene IDs: ENSG00000240476Ensembl transcript IDs: ENST00000473756.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | ACTTCTTCCTCTAGGAAACCACCTACTTCTCCCACAGAGGAGTCATaGGCAGTTAGTGTCAGCTCAGGAGCAGCCACAACTGTCCACATG | + |
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Preference number: 5 (lower is better) Translates to: TSSSRKPPTSPTEES*AVSVSSGAATTVHM Trigger: CATGTGGACAGTTGTGGCTGCTCCTGAGCTGACACTAACTGCTCATGACTCCTCTGTGGGAGAAGTAGGTGGTTTCCTAGAGGAAGAAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000473756.1 |
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| CDS TCA 90 bp | CCTGTAGCTGGGCCCATGGACAAAGCCAAGGATTCAGTAAAGTACTaGGGCTTACATTCCAGCTGTGTAATCATCTCCCTCTGTGACCTC | + |
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Preference number: 5 (lower is better) Translates to: PVAGPMDKAKDSVKY*GLHSSCVIISLCDL Trigger: GAGGTCACAGAGGGAGATGATTACACAGCTGGAATGTAAGCCTCAGTACTTTACTGAATCCTTGGCTTTGTCCATGGGCCCAGCTACAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000473756.1 |
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| CDS GCA 90 bp | ACCCTTCCACAATGCAGAGAAAGGATTTATTTGCATGCTAATGTATaGCAAAGGATAAGTAATTCCTCCCCTTCTTCTCCTTCTACATAC | + |
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Preference number: 5 (lower is better) Translates to: TLPQCRERIYLHANV*QRISNSSPSSPSTY Trigger: GTATGTAGAAGGAGAAGAAGGGGAGGAATTACTTATCCTTTGGCATACATTAGCATGCAAATAAATCCTTTCTCTGCATTGTGGAAGGGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000473756.1 |
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| CDS CCA 90 bp | TACTGGTCACAAAGCTTAGATTCAATGTCAAATAAATTTGAAAGCTaGTACTCGAAGTCACTGCTGGGGAAGAGAAAAGCTTTATGCCTG | + |
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Preference number: 5 (lower is better) Translates to: YWSQSLDSMSNKFES*YSKSLLGKRKALCL Trigger: CAGGCATAAAGCTTTTCTCTTCCCCAGCAGTGACTTCGAGTACCAGCTTTCAAATTTATTTGACATTGAATCTAAGCTTTGTGACCAGTA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000473756.1 |
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| CDS TCA 90 bp | AAAGTACTGAGGCTTACATTCCAGCTGTGTAATCATCTCCCTCTGTaGCCTCGGACAAATGATTATGCTTCCATTCTTATTTCTTCATTT | + |
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Preference number: 5 (lower is better) Translates to: KVLRLTFQLCNHLPL*PRTNDYASILISSF Trigger: AAATGAAGAAATAAGAATGGAAGCATAATCATTTGTCCGAGGTCACAGAGGGAGATGATTACACAGCTGGAATGTAAGCCTCAGTACTTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000473756.1 |
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| CDS GCA 90 bp | TTATTGATGAAGCCACAAAATAGCTTTCTAAATGACCAGAAGTCGTaGCTAGCAAATGTATCAGCAAATCTCTGTGGCTTCATTACCCAA | + |
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Preference number: 5 (lower is better) Translates to: LLMKPQNSFLNDQKS*LANVSANLCGFITQ Trigger: TTGGGTAATGAAGCCACAGAGATTTGCTGATACATTTGCTAGGCACGACTTCTGGTCATTTAGAAAGCTATTTTGTGGCTTCATCAATAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000473756.1 |
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| CDS TCA 72 bp | TCTAGGAAACCACCTACTTCTCCCACAGAGGAGTCATaGGCAGTTAGTGTCAGCTCAGGAGCAGCCACAACT | + |
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Preference number: 6 (lower is better) Translates to: SRKPPTSPTEES*AVSVSSGAATT Trigger: AGTTGTGGCTGCTCCTGAGCTGACACTAACTGCTCATGACTCCTCTGTGGGAGAAGTAGGTGGTTTCCTAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000473756.1 |
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| CDS TCA 72 bp | GGGCCCATGGACAAAGCCAAGGATTCAGTAAAGTACTaGGGCTTACATTCCAGCTGTGTAATCATCTCCCTC | + |
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Preference number: 6 (lower is better) Translates to: GPMDKAKDSVKY*GLHSSCVIISL Trigger: GAGGGAGATGATTACACAGCTGGAATGTAAGCCTCAGTACTTTACTGAATCCTTGGCTTTGTCCATGGGCCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000473756.1 |
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| CDS TCA 72 bp | AGGCTTACATTCCAGCTGTGTAATCATCTCCCTCTGTaGCCTCGGACAAATGATTATGCTTCCATTCTTATT | + |
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Preference number: 6 (lower is better) Translates to: RLTFQLCNHLPL*PRTNDYASILI Trigger: AATAAGAATGGAAGCATAATCATTTGTCCGAGGTCACAGAGGGAGATGATTACACAGCTGGAATGTAAGCCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000473756.1 |
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| CDS GCA 72 bp | AAGCCACAAAATAGCTTTCTAAATGACCAGAAGTCGTaGCTAGCAAATGTATCAGCAAATCTCTGTGGCTTC | + |
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Preference number: 6 (lower is better) Translates to: KPQNSFLNDQKS*LANVSANLCGF Trigger: GAAGCCACAGAGATTTGCTGATACATTTGCTAGGCACGACTTCTGGTCATTTAGAAAGCTATTTTGTGGCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000473756.1 |
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