Pregenerated sensors for LINC00972 (Homo sapiens)
Ensembl gene IDs: ENSG00000225128Ensembl transcript IDs: ENST00000422448.1, ENST00000438065.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | ATTACCATAATTCTGCAGAACGCAGTCAGTTGCGGTCACAGTCTCTaGCAACCCACCTTCAAACTCTCCCTGCCAATCAGAGCAGAACAT | + |
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Preference number: 5 (lower is better) Translates to: ITIILQNAVSCGHSL*QPTFKLSLPIRAEH Trigger: ATGTTCTGCTCTGATTGGCAGGGAGAGTTTGAAGGTGGGTTGGCAGAGACTGTGACCGCAACTGACTGCGTTCTGCAGAATTATGGTAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000422448.1 |
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| CDS GCA 90 bp | TTGGCTTCCAATTTCATTACCATAATTCTGCAGAACGCAGTCAGTTaGGGTCACAGTCTCTGCCAACCCACCTTCAAACTCTCCCTGCCA | + |
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Preference number: 5 (lower is better) Translates to: LASNFITIILQNAVS*GHSLCQPTFKLSLP Trigger: TGGCAGGGAGAGTTTGAAGGTGGGTTGGCAGAGACTGTGACCGCAACTGACTGCGTTCTGCAGAATTATGGTAATGAAATTGGAAGCCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000422448.1 |
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| CDS GCA 90 bp | CCTGAGGCAGTGTATGATGAGAGGCAGAAGCTTCCCTTCAGCAGTTaGCATTCACAGGAAGTATTGAGGGTGATTTATTGCACTGGTCCT | + |
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Preference number: 5 (lower is better) Translates to: PEAVYDERQKLPFSS*HSQEVLRVIYCTGP Trigger: AGGACCAGTGCAATAAATCACCCTCAATACTTCCTGTGAATGGCAACTGCTGAAGGGAAGCTTCTGCCTCTCATCATACACTGCCTCAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000438065.1 |
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| CDS GCA 90 bp | TTGGCTTCCAATTTCATTACCATAATTCTGCAGAACGCAGTCAGTTaGGGTCACAGTCTCTGCCAACCCACCTTCAAACTCTCCCTTGAG | + |
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Preference number: 5 (lower is better) Translates to: LASNFITIILQNAVS*GHSLCQPTFKLSLE Trigger: CTCAAGGGAGAGTTTGAAGGTGGGTTGGCAGAGACTGTGACCGCAACTGACTGCGTTCTGCAGAATTATGGTAATGAAATTGGAAGCCAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000438065.1 |
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| CDS TCA 90 bp | CAGTTGCGGTCACAGTCTCTGCCAACCCACCTTCAAACTCTCCCTTaGGTCTTCATTAACTCCTTCCTTCCTTCTTTCCTTCTTTCCTTT | + |
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Preference number: 5 (lower is better) Translates to: QLRSQSLPTHLQTLP*VFINSFLPSFLLSF Trigger: AAAGGAAAGAAGGAAAGAAGGAAGGAAGGAGTTAATGAAGACTCAAGGGAGAGTTTGAAGGTGGGTTGGCAGAGACTGTGACCGCAACTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000438065.1 |
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| CDS GCA 90 bp | ATTACCATAATTCTGCAGAACGCAGTCAGTTGCGGTCACAGTCTCTaGCAACCCACCTTCAAACTCTCCCTTGAGTCTTCATTAACTCCT | + |
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Preference number: 5 (lower is better) Translates to: ITIILQNAVSCGHSL*QPTFKLSLESSLTP Trigger: AGGAGTTAATGAAGACTCAAGGGAGAGTTTGAAGGTGGGTTGGCAGAGACTGTGACCGCAACTGACTGCGTTCTGCAGAATTATGGTAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000438065.1 |
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| CDS GCA 72 bp | ATTCTGCAGAACGCAGTCAGTTGCGGTCACAGTCTCTaGCAACCCACCTTCAAACTCTCCCTGCCAATCAGA | + |
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Preference number: 6 (lower is better) Translates to: ILQNAVSCGHSL*QPTFKLSLPIR Trigger: TCTGATTGGCAGGGAGAGTTTGAAGGTGGGTTGGCAGAGACTGTGACCGCAACTGACTGCGTTCTGCAGAAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000422448.1 |
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| CDS CAA 90 bp | GTTGGCTTCCAATTTCATTACCATAATTCTGCAGAACGCAGTCAGTaGCGGTCACAGTCTCTGCCAACCCACCTTCAAACTCTCCCTGCC | + |
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Preference number: 6 (lower is better) Translates to: VGFQFHYHNSAERSQ*RSQSLPTHLQTLPA Trigger: GGCAGGGAGAGTTTGAAGGTGGGTTGGCAGAGACTGTGACCGCAACTGACTGCGTTCTGCAGAATTATGGTAATGAAATTGGAAGCCAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000422448.1 |
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| CDS CAA 90 bp | CTGAGCACAGCACCTGGAAACTTGAGGCTTTCTGCTTCACGAAAGTaGGCTTCCAATTTCATTACCATAATTCTGCAGAACGCAGTCAGT | + |
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Preference number: 6 (lower is better) Translates to: LSTAPGNLRLSASRK*ASNFITIILQNAVS Trigger: ACTGACTGCGTTCTGCAGAATTATGGTAATGAAATTGGAAGCCAACTTTCGTGAAGCAGAAAGCCTCAAGTTTCCAGGTGCTGTGCTCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000422448.1 ENST00000438065.1 |
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| CDS GCA 72 bp | AATTTCATTACCATAATTCTGCAGAACGCAGTCAGTTaGGGTCACAGTCTCTGCCAACCCACCTTCAAACTC | + |
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Preference number: 6 (lower is better) Translates to: NFITIILQNAVS*GHSLCQPTFKL Trigger: GAGTTTGAAGGTGGGTTGGCAGAGACTGTGACCGCAACTGACTGCGTTCTGCAGAATTATGGTAATGAAATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000422448.1 ENST00000438065.1 |
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| CDS CAA 72 bp | CAATTTCATTACCATAATTCTGCAGAACGCAGTCAGTaGCGGTCACAGTCTCTGCCAACCCACCTTCAAACT | + |
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Preference number: 6 (lower is better) Translates to: QFHYHNSAERSQ*RSQSLPTHLQT Trigger: AGTTTGAAGGTGGGTTGGCAGAGACTGTGACCGCAACTGACTGCGTTCTGCAGAATTATGGTAATGAAATTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000422448.1 ENST00000438065.1 |
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| CDS CAA 72 bp | GCACCTGGAAACTTGAGGCTTTCTGCTTCACGAAAGTaGGCTTCCAATTTCATTACCATAATTCTGCAGAAC | + |
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Preference number: 6 (lower is better) Translates to: APGNLRLSASRK*ASNFITIILQN Trigger: GTTCTGCAGAATTATGGTAATGAAATTGGAAGCCAACTTTCGTGAAGCAGAAAGCCTCAAGTTTCCAGGTGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000422448.1 ENST00000438065.1 |
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