Pregenerated sensors for LINC00970 (Homo sapiens)

Ensembl gene IDs: ENSG00000203601

Ensembl transcript IDs: ENST00000366408.3

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CAA 72 bp	AGGCTCAGGGGAAATAAAGTAGTAGAGAAGTCCATATaGGCCTCTTCCTGTGGTTTCAGCTCTGTGATCTTG	+
Preference number: 6 (lower is better) Translates to: RLRGNKVVEKSI*ASSCGFSSVIL Trigger: CAAGATCACAGAGCTGAAACCACAGGAAGAGGCCAATATGGACTTCTCTACTACTTTATTTCCCCTGAGCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000366408.3
CDS CAA 90 bp	AAGCTGACCAGGCTCAGGGGAAATAAAGTAGTAGAGAAGTCCATATaGGCCTCTTCCTGTGGTTTCAGCTCTGTGATCTTGTGGAAATTA	+
Preference number: 6 (lower is better) Translates to: KLTRLRGNKVVEKSI*ASSCGFSSVILWKL Trigger: TAATTTCCACAAGATCACAGAGCTGAAACCACAGGAAGAGGCCAATATGGACTTCTCTACTACTTTATTTCCCCTGAGCCTGGTCAGCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000366408.3
CDS TCA 72 bp	AGTCCATATTGGCCTCTTCCTGTGGTTTCAGCTCTGTaGTCTTGTGGAAATTACTCCAACTCTAGATGCTTC	+
Preference number: 6 (lower is better) Translates to: SPYWPLPVVSAL*SCGNYSNSRCF Trigger: GAAGCATCTAGAGTTGGAGTAATTTCCACAAGATCACAGAGCTGAAACCACAGGAAGAGGCCAATATGGACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000366408.3

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu