Pregenerated sensors for LINC00960 (Homo sapiens)
Ensembl gene IDs: ENSG00000242516Ensembl transcript IDs: ENST00000463183.2, ENST00000492922.1, ENST00000656252.1, ENST00000657028.1, ENST00000662338.1, ENST00000665741.1, ENST00000666754.1, ENST00000669013.1
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TCTGAATGGCATTTCTGGACCCAGCCAGGGACTGAGGGCACTCACTaGCCTAAAGGAAAGAACACAGGCCTGGCTGGCTTTGCCACCTGC | + |
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Preference number: 5 (lower is better) Translates to: SEWHFWTQPGTEGTH*PKGKNTGLAGFATC Trigger: GCAGGTGGCAAAGCCAGCCAGGCCTGTGTTCTTTCCTTTAGGGCAGTGAGTGCCCTCAGTCCCTGGCTGGGTCCAGAAATGCCATTCAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000492922.1 |
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| CDS GCA 90 bp | GGGCACCAGCTCAGCCACAGCAAGGTAGTGCACTGGTCAGAATCCTaGAGCCTCCTTTCCAGTCTCTGGCTCCTAGACATTCCTAGACAC | + |
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Preference number: 5 (lower is better) Translates to: GHQLSHSKVVHWSES*SLLSSLWLLDIPRH Trigger: GTGTCTAGGAATGTCTAGGAGCCAGAGACTGGAAAGGAGGCTGCAGGATTCTGACCAGTGCACTACCTTGCTGTGGCTGAGCTGGTGCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000492922.1 |
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| CDS TCA 90 bp | GTCCTGAAAACGCAAGTCCCAGGCCAGGCAGCATTCATCACAAGCTaGCAAGAGGCTTTGGGCCTTAAGGGAACATTGGTGGTAGCCTGG | + |
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Preference number: 5 (lower is better) Translates to: VLKTQVPGQAAFITS*QEALGLKGTLVVAW Trigger: CCAGGCTACCACCAATGTTCCCTTAAGGCCCAAAGCCTCTTGTCAGCTTGTGATGAATGCTGCCTGGCCTGGGACTTGCGTTTTCAGGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000492922.1 |
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| CDS GCA 90 bp | AACAGTCCTGAAATCACCGTTTCCTCATCCCCAGCAGTGATGGCATaGTGCAGAGATCAACTCTGGGTTCTGCGGGAGAGAGAACACAGC | + |
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Preference number: 5 (lower is better) Translates to: NSPEITVSSSPAVMA*CRDQLWVLREREHS Trigger: GCTGTGTTCTCTCTCCCGCAGAACCCAGAGTTGATCTCTGCAGCATGCCATCACTGCTGGGGATGAGGAAACGGTGATTTCAGGACTGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000492922.1 |
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| CDS TCA 90 bp | GTTGTCCTTTTTGTATTCCTTGAGCCCAGTCAGGAAGGGCTTTCATaGCCGGGCCTCCTGACAAACAACTTGTTACAAAAAGAGCTCGGT | + |
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Preference number: 5 (lower is better) Translates to: VVLFVFLEPSQEGLS*PGLLTNNLLQKELG Trigger: ACCGAGCTCTTTTTGTAACAAGTTGTTTGTCAGGAGGCCCGGTCATGAAAGCCCTTCCTGACTGGGCTCAAGGAATACAAAAAGGACAAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 6 transcripts: ENST00000463183.2 ENST00000656252.1 ENST00000662338.1 ENST00000665741.1 ENST00000666754.1 ENST00000669013.1 |
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| CDS GCA 90 bp | TGCTGCCTTGAAGAAAAGAACCATGTGCTGGCAGGATTTATCGCCTaGAAACTTGAAAACCTTTGGGCTCTGAATAACCAGCAGCCATAC | + |
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Preference number: 5 (lower is better) Translates to: CCLEEKNHVLAGFIA*KLENLWALNNQQPY Trigger: GTATGGCTGCTGGTTATTCAGAGCCCAAAGGTTTTCAAGTTTGCAGGCGATAAATCCTGCCAGCACATGGTTCTTTTCTTCAAGGCAGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000492922.1 |
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| CDS TCA 90 bp | AAACAACAGACAATGGCAAAAACAAGTTGTCCTTTTTGTATTCCTTaGGCCCAGTCAGGAAGGGCTTTCATGACCGGGCCTCCTGACAAA | + |
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Preference number: 5 (lower is better) Translates to: KQQTMAKTSCPFCIP*AQSGRAFMTGPPDK Trigger: TTTGTCAGGAGGCCCGGTCATGAAAGCCCTTCCTGACTGGGCTCAAGGAATACAAAAAGGACAACTTGTTTTTGCCATTGTCTGTTGTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 6 transcripts: ENST00000463183.2 ENST00000656252.1 ENST00000662338.1 ENST00000665741.1 ENST00000666754.1 ENST00000669013.1 |
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| CDS TCA 90 bp | TGGTATATATGCACAATGGAATACTACTCAGCCATAAAGAGGAAATaGATTAATGGCAGTTGCAGCAACCTGGATGGGATTGAAGACTAT | + |
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Preference number: 5 (lower is better) Translates to: WYICTMEYYSAIKRK*INGSCSNLDGIEDY Trigger: ATAGTCTTCAATCCCATCCAGGTTGCTGCAACTGCCATTAATTCATTTCCTCTTTATGGCTGAGTAGTATTCCATTGTGCATATATACCA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669013.1 |
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| CDS GCA 90 bp | ATAGCAGCACAATTTGCAATTGCAAAAATGTTGAACCAATCCAAATaGTCATCAATCAACGAGTGGATGAAGAAACCGTGGTATATATGC | + |
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Preference number: 5 (lower is better) Translates to: IAAQFAIAKMLNQSK*SSINEWMKKPWYIC Trigger: GCATATATACCACGGTTTCTTCATCCACTCGTTGATTGATGAGCATTTGGATTGGTTCAACATTTTTGCAATTGCAAATTGTGCTGCTAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000669013.1 |
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| CDS TCA 90 bp | TGGCACATTGTGGAGCAAAATTTAAATATTAAATTTGAACTCTATTaGACAGGGACAGAAACAATGGTCACTAAGTCCTGGAACGAGTTG | + |
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Preference number: 5 (lower is better) Translates to: WHIVEQNLNIKFELY*TGTETMVTKSWNEL Trigger: CAACTCGTTCCAGGACTTAGTGACCATTGTTTCTGTCCCTGTTCAATAGAGTTCAAATTTAATATTTAAATTTTGCTCCACAATGTGCCA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000463183.2 ENST00000656252.1 ENST00000662338.1 ENST00000665741.1 ENST00000666754.1 ENST00000669013.1 |
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| CDS CCA 72 bp | GAGGCTTTGGGCCTTAAGGGAACATTGGTGGTAGCCTaGCAGTACTCACTGTGGCCTGAGGTGGTGGTGGCT | + |
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Preference number: 6 (lower is better) Translates to: EALGLKGTLVVA*QYSLWPEVVVA Trigger: AGCCACCACCACCTCAGGCCACAGTGAGTACTGCCAGGCTACCACCAATGTTCCCTTAAGGCCCAAAGCCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000492922.1 |
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| CDS CCA 72 bp | AAGGGAACATTGGTGGTAGCCTGGCAGTACTCACTGTaGCCTGAGGTGGTGGTGGCTACCCTGCCTTTAGGA | + |
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Preference number: 6 (lower is better) Translates to: KGTLVVAWQYSL*PEVVVATLPLG Trigger: TCCTAAAGGCAGGGTAGCCACCACCACCTCAGGCCACAGTGAGTACTGCCAGGCTACCACCAATGTTCCCTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000492922.1 |
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| CDS GCA 72 bp | ATCACCGTTTCCTCATCCCCAGCAGTGATGGCATGCTaGAGAGATCAACTCTGGGTTCTGCGGGAGAGAGAA | + |
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Preference number: 6 (lower is better) Translates to: ITVSSSPAVMAC*RDQLWVLRERE Trigger: TTCTCTCTCCCGCAGAACCCAGAGTTGATCTCTGCAGCATGCCATCACTGCTGGGGATGAGGAAACGGTGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000492922.1 |
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| CDS GCA 72 bp | TCACCGAGCGCATCCCCAGGAGCTGCTGGCGCAGCTTaGCTCAATATCTTAACAGTAAGTGATTCCTGGACA | + |
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Preference number: 6 (lower is better) Translates to: SPSASPGAAGAA*LNILTVSDSWT Trigger: TGTCCAGGAATCACTTACTGTTAAGATATTGAGGCAAGCTGCGCCAGCAGCTCCTGGGGATGCGCTCGGTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000657028.1 |
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| CDS GCA 72 bp | TTTTGGGTGCCATTCACCGAGCGCATCCCCAGGAGCTaGTGGCGCAGCTTGCCTCAATATCTTAACAGTAAG | + |
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Preference number: 6 (lower is better) Translates to: FWVPFTERIPRS*WRSLPQYLNSK Trigger: CTTACTGTTAAGATATTGAGGCAAGCTGCGCCAGCAGCTCCTGGGGATGCGCTCGGTGAATGGCACCCAAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000657028.1 |
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| CDS CCA 72 bp | TCCCCAGCAGTGATGGCATGCTGCAGAGATCAACTCTaGGTTCTGCGGGAGAGAGAACACAGCAATTGTGAG | + |
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Preference number: 6 (lower is better) Translates to: SPAVMACCRDQL*VLREREHSNCE Trigger: CTCACAATTGCTGTGTTCTCTCTCCCGCAGAACCCAGAGTTGATCTCTGCAGCATGCCATCACTGCTGGGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000492922.1 |
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| CDS TCA 72 bp | ACAGTCCTGAAATCACCGTTTCCTCATCCCCAGCAGTaGTGGCATGCTGCAGAGATCAACTCTGGGTTCTGC | + |
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Preference number: 6 (lower is better) Translates to: TVLKSPFPHPQQ*WHAAEINSGFC Trigger: GCAGAACCCAGAGTTGATCTCTGCAGCATGCCATCACTGCTGGGGATGAGGAAACGGTGATTTCAGGACTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000492922.1 |
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| CDS TCA 72 bp | ACAGTCCTGAAATCACCGTTTCCTCATCCCCAGCAGTaGTGGCATGCTGCAGAGATCAACTCTGGGTTCGGT | + |
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Preference number: 6 (lower is better) Translates to: TVLKSPFPHPQQ*WHAAEINSGFG Trigger: ACCGAACCCAGAGTTGATCTCTGCAGCATGCCATCACTGCTGGGGATGAGGAAACGGTGATTTCAGGACTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000662338.1 ENST00000665741.1 |
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| CDS CCA 72 bp | AGGGCACTCACTGCCCTAAAGGAAAGAACACAGGCCTaGCTGGCTTTGCCACCTGCTAATTGTAGAGACCAA | + |
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Preference number: 6 (lower is better) Translates to: RALTALKERTQA*LALPPANCRDQ Trigger: TTGGTCTCTACAATTAGCAGGTGGCAAAGCCAGCCAGGCCTGTGTTCTTTCCTTTAGGGCAGTGAGTGCCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000492922.1 |
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| CDS TCA 72 bp | ACAGTCCTGAAATCACCGTTTCCTCATCCCCAGCAGTaGTGGCATGCTGCAGAGATCAACTCTGGGTTCTGT | + |
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Preference number: 6 (lower is better) Translates to: TVLKSPFPHPQQ*WHAAEINSGFC Trigger: ACAGAACCCAGAGTTGATCTCTGCAGCATGCCATCACTGCTGGGGATGAGGAAACGGTGATTTCAGGACTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000656252.1 ENST00000666754.1 |
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| CDS TCA 72 bp | ACAGTCCTGAAATCACCGTTTCCTCATCCCCAGCAGTaGTGGCATGCTGCAGAGATCAACTCTGGGTTCTTT | + |
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Preference number: 6 (lower is better) Translates to: TVLKSPFPHPQQ*WHAAEINSGFF Trigger: AAAGAACCCAGAGTTGATCTCTGCAGCATGCCATCACTGCTGGGGATGAGGAAACGGTGATTTCAGGACTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000463183.2 ENST00000657028.1 ENST00000669013.1 |
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| CDS CCA 72 bp | ACCAGCAGCCATACCCAGGTACTACATCAAGGGCCTTaGATGACCCTCATAGACTTGCTAGATTTAGGTGAG | + |
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Preference number: 6 (lower is better) Translates to: TSSHTQVLHQGP*MTLIDLLDLGE Trigger: CTCACCTAAATCTAGCAAGTCTATGAGGGTCATCCAAGGCCCTTGATGTAGTACCTGGGTATGGCTGCTGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000492922.1 |
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| CDS CAA 72 bp | AGGAGAATCAGATTCCAGTGGTTGGAACTTCAGTGTTaGGAAACCTGGCAACTAAGGGCTCCCGCACTCTGT | + |
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Preference number: 6 (lower is better) Translates to: RRIRFQWLELQC*ETWQLRAPALC Trigger: ACAGAGTGCGGGAGCCCTTAGTTGCCAGGTTTCCAAACACTGAAGTTCCAACCACTGGAATCTGATTCTCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000492922.1 |
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| CDS CAA 90 bp | CATACCCAGGTACTACATCAAGGGCCTTGGATGACCCTCATAGACTaGCTAGATTTAGGTGAGGTCAGCACATTACTAGCTGTGGTGGCT | + |
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Preference number: 6 (lower is better) Translates to: HTQVLHQGPWMTLID*LDLGEVSTLLAVVA Trigger: AGCCACCACAGCTAGTAATGTGCTGACCTCACCTAAATCTAGCAAGTCTATGAGGGTCATCCAAGGCCCTTGATGTAGTACCTGGGTATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000492922.1 |
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| CDS CCA 72 bp | CTACTGGTCAATTCTGGAGCCCAGGCTGTTGCTTCCTaGTCTGTTGATGAATCCTCCATAGTCTCAGTTGAA | + |
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Preference number: 6 (lower is better) Translates to: LLVNSGAQAVAS*SVDESSIVSVE Trigger: TTCAACTGAGACTATGGAGGATTCATCAACAGACCAGGAAGCAACAGCCTGGGCTCCAGAATTGACCAGTAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000463183.2 ENST00000662338.1 ENST00000666754.1 |
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| CDS CAA 72 bp | GACAATGGCAAAAACAAGTTGTCCTTTTTGTATTCCTaGAGCCCAGTCAGGAAGGGCTTTCATGACCGGGCC | + |
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Preference number: 6 (lower is better) Translates to: DNGKNKLSFLYS*SPVRKGFHDRA Trigger: GGCCCGGTCATGAAAGCCCTTCCTGACTGGGCTCAAGGAATACAAAAAGGACAACTTGTTTTTGCCATTGTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 6 transcripts: ENST00000463183.2 ENST00000656252.1 ENST00000662338.1 ENST00000665741.1 ENST00000666754.1 ENST00000669013.1 |
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| CDS TCA 72 bp | ACAATGGCAAAAACAAGTTGTCCTTTTTGTATTCCTTaGGCCCAGTCAGGAAGGGCTTTCATGACCGGGCCT | + |
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Preference number: 6 (lower is better) Translates to: TMAKTSCPFCIP*AQSGRAFMTGP Trigger: AGGCCCGGTCATGAAAGCCCTTCCTGACTGGGCTCAAGGAATACAAAAAGGACAACTTGTTTTTGCCATTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 6 transcripts: ENST00000463183.2 ENST00000656252.1 ENST00000662338.1 ENST00000665741.1 ENST00000666754.1 ENST00000669013.1 |
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| CDS TCA 72 bp | TTTGTATTCCTTGAGCCCAGTCAGGAAGGGCTTTCATaGCCGGGCCTCCTGACAAACAACTTGTTACAAAAA | + |
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Preference number: 6 (lower is better) Translates to: FVFLEPSQEGLS*PGLLTNNLLQK Trigger: TTTTTGTAACAAGTTGTTTGTCAGGAGGCCCGGTCATGAAAGCCCTTCCTGACTGGGCTCAAGGAATACAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000463183.2 ENST00000656252.1 ENST00000662338.1 ENST00000665741.1 ENST00000666754.1 ENST00000669013.1 |
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| CDS TCA 72 bp | GCTTTGCCACCTGCTAATTGTAGAGACCAAAGGCCTTaGGTGAACATAGGCAGTCATCAGAAAGTTCATGCA | + |
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Preference number: 6 (lower is better) Translates to: ALPPANCRDQRP*VNIGSHQKVHA Trigger: TGCATGAACTTTCTGATGACTGCCTATGTTCACTCAAGGCCTTTGGTCTCTACAATTAGCAGGTGGCAAAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000492922.1 |
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| CDS TCA 72 bp | GTCAAGTGGACTTCTAAAATTTTTGACTGTACTCCCTaGCTTCTGAATGGCATTTCTGGACCCAGCCAGGGA | + |
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Preference number: 6 (lower is better) Translates to: VKWTSKIFDCTP*LLNGISGPSQG Trigger: TCCCTGGCTGGGTCCAGAAATGCCATTCAGAAGTCAGGGAGTACAGTCAAAAATTTTAGAAGTCCACTTGAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000492922.1 |
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| CDS TCA 72 bp | ACCAAGCGAACTTTCAGAATCCCTGATTCTAGGACTTaGTTTTTGGTTGGCATTTATGAAGCTGCCCAGGGC | + |
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Preference number: 6 (lower is better) Translates to: TKRTFRIPDSRT*FLVGIYEAAQG Trigger: GCCCTGGGCAGCTTCATAAATGCCAACCAAAAATCAAGTCCTAGAATCAGGGATTCTGAAAGTTCGCTTGGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000492922.1 |
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| CDS CCA 72 bp | GAACTTTCAGAATCCCTGATTCTAGGACTTGATTTTTaGTTGGCATTTATGAAGCTGCCCAGGGCCAGTAGG | + |
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Preference number: 6 (lower is better) Translates to: ELSESLILGLDF*LAFMKLPRASR Trigger: CCTACTGGCCCTGGGCAGCTTCATAAATGCCAACCAAAAATCAAGTCCTAGAATCAGGGATTCTGAAAGTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000492922.1 |
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| CDS CCA 72 bp | GTCTATTGGCTCTGTCTGATTCAGCAATCCCACCACTaGGTATCTGGTTTTAACCTCAGATCACTGAAAGAG | + |
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Preference number: 6 (lower is better) Translates to: VYWLCLIQQSHH*VSGFNLRSLKE Trigger: CTCTTTCAGTGATCTGAGGTTAAAACCAGATACCCAGTGGTGGGATTGCTGAATCAGACAGAGCCAATAGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000657028.1 |
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| CDS CAA 72 bp | CTTTCAGAATCCCTGATTCTAGGACTTGATTTTTGGTaGGCATTTATGAAGCTGCCCAGGGCCAGTAGGGAT | + |
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Preference number: 6 (lower is better) Translates to: LSESLILGLDFW*AFMKLPRASRD Trigger: ATCCCTACTGGCCCTGGGCAGCTTCATAAATGCCAACCAAAAATCAAGTCCTAGAATCAGGGATTCTGAAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000492922.1 |
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| CDS TCA 72 bp | TGGTGCTGCATGCCCAAGATTTTAATGTCCAGACACTaGAGAACATCTACTACCATCAACACCATCCAGGAA | + |
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Preference number: 6 (lower is better) Translates to: WCCMPKILMSRH*RTSTTINTIQE Trigger: TTCCTGGATGGTGTTGATGGTAGTAGATGTTCTTCAGTGTCTGGACATTAAAATCTTGGGCATGCAGCACCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000463183.2 ENST00000657028.1 ENST00000669013.1 |
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| CDS GCA 72 bp | AACGAGTTGTGTGAGCCCCTTGAGGCATTCATCCAGTaGTGTTTCGGAGAACTAGTTATTGAAAAACAACAG | + |
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Preference number: 6 (lower is better) Translates to: NELCEPLEAFIQ*CFGELVIEKQQ Trigger: CTGTTGTTTTTCAATAACTAGTTCTCCGAAACAGCACTGGATGAATGCCTCAAGGGGCTCACACAACTCGTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENST00000463183.2 ENST00000656252.1 ENST00000662338.1 ENST00000665741.1 ENST00000666754.1 ENST00000669013.1 |
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| CDS GCA 72 bp | GAAGAAAAGAACCATGTGCTGGCAGGATTTATCGCCTaGAAACTTGAAAACCTTTGGGCTCTGAATAACCAG | + |
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Preference number: 6 (lower is better) Translates to: EEKNHVLAGFIA*KLENLWALNNQ Trigger: CTGGTTATTCAGAGCCCAAAGGTTTTCAAGTTTGCAGGCGATAAATCCTGCCAGCACATGGTTCTTTTCTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000492922.1 |
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| CDS CCA 72 bp | GGAAAGGAAGGGAGGAATAGGAAGAACTATGTCTTGTaGTTTGAGTGCCAGATCAGCTGCAATGCAATAGAA | + |
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Preference number: 6 (lower is better) Translates to: GKEGRNRKNYVL*FECQISCNAIE Trigger: TTCTATTGCATTGCAGCTGATCTGGCACTCAAACCACAAGACATAGTTCTTCCTATTCCTCCCTTCCTTTCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000492922.1 |
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| CDS TCA 72 bp | GCTCTCCTCGAAAGAGATAAAAGCAGAACTATCACTTaGCCCAGCAATCTCATTACTGGGTATATACCCAGA | + |
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Preference number: 6 (lower is better) Translates to: ALLERDKSRTIT*PSNLITGYIPR Trigger: TCTGGGTATATACCCAGTAATGAGATTGCTGGGTCAAGTGATAGTTCTGCTTTTATCTCTTTCGAGGAGAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669013.1 |
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| CDS CCA 72 bp | TTAAATTTGAACTCTATTGAACAGGGACAGAAACAATaGTCACTAAGTCCTGGAACGAGTTGTGTGAGCCCC | + |
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Preference number: 6 (lower is better) Translates to: LNLNSIEQGQKQ*SLSPGTSCVSP Trigger: GGGGCTCACACAACTCGTTCCAGGACTTAGTGACCATTGTTTCTGTCCCTGTTCAATAGAGTTCAAATTTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000463183.2 ENST00000656252.1 ENST00000662338.1 ENST00000665741.1 ENST00000666754.1 ENST00000669013.1 |
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| CDS CCA 72 bp | TGGAATATTGTATCTTTAAGGAGGTTCATGAAAGGATaGAGAAGGCCCTCAGAAGCACTCTTGAATACAGGT | + |
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Preference number: 6 (lower is better) Translates to: WNIVSLRRFMKG*RRPSEALLNTG Trigger: ACCTGTATTCAAGAGTGCTTCTGAGGGCCTTCTCCATCCTTTCATGAACCTCCTTAAAGATACAATATTCCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000492922.1 |
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| CDS CCA 72 bp | GCAGCTTGCCTCAATATCTTAACAGTAAGTGATTCCTaGACATGCTTTGAGTCAGTTTACACTAGTTATGTC | + |
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Preference number: 6 (lower is better) Translates to: AACLNILTVSDS*TCFESVYTSYV Trigger: GACATAACTAGTGTAAACTGACTCAAAGCATGTCCAGGAATCACTTACTGTTAAGATATTGAGGCAAGCTGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000657028.1 |
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| CDS CCA 72 bp | AAGACATGGAATCAACCTAAATGCCCAATGACAGGTTaGATACAGATAATATGGCACATTGTGGAGCAAAAT | + |
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Preference number: 6 (lower is better) Translates to: KTWNQPKCPMTG*IQIIWHIVEQN Trigger: ATTTTGCTCCACAATGTGCCATATTATCTGTATCCAACCTGTCATTGGGCATTTAGGTTGATTCCATGTCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000463183.2 ENST00000656252.1 ENST00000662338.1 ENST00000665741.1 ENST00000666754.1 ENST00000669013.1 |
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| CDS CCA 72 bp | AAATGCTCATCAATCAACGAGTGGATGAAGAAACCGTaGTATATATGCACAATGGAATACTACTCAGCCATA | + |
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Preference number: 6 (lower is better) Translates to: KCSSINEWMKKP*YICTMEYYSAI Trigger: TATGGCTGAGTAGTATTCCATTGTGCATATATACCACGGTTTCTTCATCCACTCGTTGATTGATGAGCATTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669013.1 |
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| CDS CCA 72 bp | ATGTTGAACCAATCCAAATGCTCATCAATCAACGAGTaGATGAAGAAACCGTGGTATATATGCACAATGGAA | + |
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Preference number: 6 (lower is better) Translates to: MLNQSKCSSINE*MKKPWYICTME Trigger: TTCCATTGTGCATATATACCACGGTTTCTTCATCCACTCGTTGATTGATGAGCATTTGGATTGGTTCAACAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669013.1 |
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| CDS GCA 72 bp | TGCCTCAATATCTTAACAGTAAGTGATTCCTGGACATaGTTTGAGTCAGTTTACACTAGTTATGTCCTTAAG | + |
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Preference number: 6 (lower is better) Translates to: CLNILTVSDSWT*FESVYTSYVLK Trigger: CTTAAGGACATAACTAGTGTAAACTGACTCAAAGCATGTCCAGGAATCACTTACTGTTAAGATATTGAGGCA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000657028.1 |
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| CDS CCA 72 bp | AAGCAGAACTATCACTTGACCCAGCAATCTCATTACTaGGTATATACCCAGAGGTATATAAATTGTTCTATC | + |
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Preference number: 6 (lower is better) Translates to: KQNYHLTQQSHY*VYTQRYINCSI Trigger: GATAGAACAATTTATATACCTCTGGGTATATACCCAGTAATGAGATTGCTGGGTCAAGTGATAGTTCTGCTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669013.1 |
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| CDS TCA 72 bp | AAGGACATGAATGCTTTTCAAAAGAATACATACATGTaGCCAACAACCATAGAATACAAAGCTCAGTATCAC | + |
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Preference number: 6 (lower is better) Translates to: KDMNAFQKNTYM*PTTIEYKAQYH Trigger: GTGATACTGAGCTTTGTATTCTATGGTTGTTGGTCACATGTATGTATTCTTTTGAAAAGCATTCATGTCCTT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000669013.1 |
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| CDS CAA 72 bp | ATATTTATAGCAGCACAATTTGCAATTGCAAAAATGTaGAACCAATCCAAATGCTCATCAATCAACGAGTGG | + |
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Preference number: 6 (lower is better) Translates to: IFIAAQFAIAKM*NQSKCSSINEW Trigger: CCACTCGTTGATTGATGAGCATTTGGATTGGTTCAACATTTTTGCAATTGCAAATTGTGCTGCTATAAATAT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000669013.1 |
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