Pregenerated sensors for LINC00955 (Homo sapiens)
Ensembl gene IDs: ENSG00000216560Ensembl transcript IDs: ENST00000502775.1, ENST00000514422.1
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CTCACTTCCAGCCGGAAATCAGTAAACAATGTTCAGGTGCCATTCTaGAATCTGTATCTTGTTTCCGGGAACTCAGGAGTGGAGACCCTG | + |
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Preference number: 5 (lower is better) Translates to: LTSSRKSVNNVQVPF*NLYLVSGNSGVETL Trigger: CAGGGTCTCCACTCCTGAGTTCCCGGAAACAAGATACAGATTTCAGAATGGCACCTGAACATTGTTTACTGATTTCCGGCTGGAAGTGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000502775.1 |
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| CDS TCA 90 bp | CGTGTATACATACAGTGCAAAATATTGACAGTTGGTGAATCTAACTaGGGGGCATGCAAGTGGTCCTTGTCTATTCTTTCAACGTGTCTG | + |
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Preference number: 5 (lower is better) Translates to: RVYIQCKILTVGESN*GACKWSLSILSTCL Trigger: CAGACACGTTGAAAGAATAGACAAGGACCACTTGCATGCCCCTCAGTTAGATTCACCAACTGTCAATATTTTGCACTGTATGTATACACG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000514422.1 |
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| CDS GCA 90 bp | TACGTAAAAGAAAACAGCAGCTCCAAACTTAGATGTATCAGTAATTaGATTAAGTATAAACAGACGAAGAGCTCTACTTGTGAGCCTATG | + |
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Preference number: 5 (lower is better) Translates to: YVKENSSSKLRCISN*IKYKQTKSSTCEPM Trigger: CATAGGCTCACAAGTAGAGCTCTTCGTCTGTTTATACTTAATGCAATTACTGATACATCTAAGTTTGGAGCTGCTGTTTTCTTTTACGTA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000514422.1 |
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| CDS CCA 72 bp | TCTGAAATCTGTATCTTGTTTCCGGGAACTCAGGAGTaGAGACCCTGTAGACTGGAGCTGTCCAGCAAAGGT | + |
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Preference number: 6 (lower is better) Translates to: SEICILFPGTQE*RPCRLELSSKG Trigger: ACCTTTGCTGGACAGCTCCAGTCTACAGGGTCTCCACTCCTGAGTTCCCGGAAACAAGATACAGATTTCAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000502775.1 |
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| CDS GCA 72 bp | CAAGTGGTCCTTGTCTATTCTTTCAACGTGTCTGTTTaGTCGAAAGTCCTCAAGGTAAGCTGGGGGAAATCA | + |
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Preference number: 6 (lower is better) Translates to: QVVLVYSFNVSV*SKVLKVSWGKS Trigger: TGATTTCCCCCAGCTTACCTTGAGGACTTTCGAGCAAACAGACACGTTGAAAGAATAGACAAGGACCACTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000514422.1 |
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| CDS CCA 72 bp | AGCACTTCTGTCAAGAATAGACGGCATATACAGTGGTaGCCCCATAAGATTAGAACAGAGCAGACCTTGTAC | + |
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Preference number: 6 (lower is better) Translates to: STSVKNRRHIQW*PHKIRTEQTLY Trigger: GTACAAGGTCTGCTCTGTTCTAATCTTATGGGGCCACCACTGTATATGCCGTCTATTCTTGACAGAAGTGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000514422.1 |
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| CDS TCA 72 bp | AGCCGGAAATCAGTAAACAATGTTCAGGTGCCATTCTaGAATCTGTATCTTGTTTCCGGGAACTCAGGAGTG | + |
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Preference number: 6 (lower is better) Translates to: SRKSVNNVQVPF*NLYLVSGNSGV Trigger: CACTCCTGAGTTCCCGGAAACAAGATACAGATTTCAGAATGGCACCTGAACATTGTTTACTGATTTCCGGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000502775.1 |
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| CDS CAA 90 bp | ACTGTTTCTATGTTTAGGTATGTTTACATGCACAAATACTTACCATaGTGTTACAATCACCTGCACCATTCAGTACAGTACCACCCTGCC | + |
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Preference number: 6 (lower is better) Translates to: TVSMFRYVYMHKYLP*CYNHLHHSVQYHPA Trigger: GGCAGGGTGGTACTGTACTGAATGGTGCAGGTGATTGTAACACAATGGTAAGTATTTGTGCATGTAAACATACCTAAACATAGAAACAGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000514422.1 |
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| CDS TCA 72 bp | ATACAGTGCAAAATATTGACAGTTGGTGAATCTAACTaGGGGGCATGCAAGTGGTCCTTGTCTATTCTTTCA | + |
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Preference number: 6 (lower is better) Translates to: IQCKILTVGESN*GACKWSLSILS Trigger: TGAAAGAATAGACAAGGACCACTTGCATGCCCCTCAGTTAGATTCACCAACTGTCAATATTTTGCACTGTAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000514422.1 |
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| CDS TCA 72 bp | ACAGACATGTACGTGTATACATACAGTGCAAAATATTaGCAGTTGGTGAATCTAACTGAGGGGCATGCAAGT | + |
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Preference number: 6 (lower is better) Translates to: TDMYVYTYSAKY*QLVNLTEGHAS Trigger: ACTTGCATGCCCCTCAGTTAGATTCACCAACTGTCAATATTTTGCACTGTATGTATACACGTACATGTCTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000514422.1 |
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| CDS CCA 72 bp | TACATGTATATATGTGTGTATGCATATGCTTGTGTGTaGATGTGTGTGAGTGTGTGTGTATTTCCATGTACA | + |
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Preference number: 6 (lower is better) Translates to: YMYICVYAYACV*MCVSVCVFPCT Trigger: TGTACATGGAAATACACACACACTCACACACATCCACACACAAGCATATGCATACACACATATATACATGTA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000514422.1 |
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| CDS CAA 90 bp | TATATGCACGTGTATATACATGTATATATGTGTGTATGCATATGCTaGTGTGTGGATGTGTGTGAGTGTGTGTGTATTTCCATGTACAGT | + |
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Preference number: 6 (lower is better) Translates to: YMHVYIHVYMCVCIC*CVDVCECVCISMYS Trigger: ACTGTACATGGAAATACACACACACTCACACACATCCACACACAAGCATATGCATACACACATATATACATGTATATACACGTGCATATA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000514422.1 |
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| CDS GCA 72 bp | GAAAACAGCAGCTCCAAACTTAGATGTATCAGTAATTaGATTAAGTATAAACAGACGAAGAGCTCTACTTGT | + |
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Preference number: 6 (lower is better) Translates to: ENSSSKLRCISN*IKYKQTKSSTC Trigger: ACAAGTAGAGCTCTTCGTCTGTTTATACTTAATGCAATTACTGATACATCTAAGTTTGGAGCTGCTGTTTTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000514422.1 |
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| CDS CAA 72 bp | ATGTTTAGGTATGTTTACATGCACAAATACTTACCATaGTGTTACAATCACCTGCACCATTCAGTACAGTAC | + |
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Preference number: 6 (lower is better) Translates to: MFRYVYMHKYLP*CYNHLHHSVQY Trigger: GTACTGTACTGAATGGTGCAGGTGATTGTAACACAATGGTAAGTATTTGTGCATGTAAACATACCTAAACAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000514422.1 |
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