Pregenerated sensors for LINC00945 (Homo sapiens)
Ensembl gene IDs: ENSG00000232539Ensembl transcript IDs: ENST00000453716.1
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TTGGCTCCCGGTCCTTCCCCGTCTGTAAGAGCTGACGGCTGGATCTaGCTCCAGATTAGACCACCAGGGGAAGAAAGGCCGTGTGAAGAC | + |
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Preference number: 5 (lower is better) Translates to: LAPGPSPSVRADGWI*LQIRPPGEERPCED Trigger: GTCTTCACACGGCCTTTCTTCCCCTGGTGGTCTAATCTGGAGTCAGATCCAGCCGTCAGCTCTTACAGACGGGGAAGGACCGGGAGCCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000453716.1 |
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| CDS CCA 90 bp | AGGAATGAGGGAAACAAAGGTGGCTCTGAAGTCATTTCCCCGCACTaGGTCCAGCCATCCGGTTTCACTCCTTCCCCATTGAACCGGCAG | + |
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Preference number: 5 (lower is better) Translates to: RNEGNKGGSEVISPH*VQPSGFTPSPLNRQ Trigger: CTGCCGGTTCAATGGGGAAGGAGTGAAACCGGATGGCTGGACCCAGTGCGGGGAAATGACTTCAGAGCCACCTTTGTTTCCCTCATTCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000453716.1 |
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| CDS GCA 90 bp | CAGCCTGAAAAGATGCGAGCGGTTCTGGCCGCAGCATCTCTGGCTTaGTGGATGTTCCGAATGGTTCAAACAAGCCCTTTCATAGAGACG | + |
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Preference number: 5 (lower is better) Translates to: QPEKMRAVLAAASLA*WMFRMVQTSPFIET Trigger: CGTCTCTATGAAAGGGCTTGTTTGAACCATTCGGAACATCCAGCAAGCCAGAGATGCTGCGGCCAGAACCGCTCGCATCTTTTCAGGCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000453716.1 |
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| CDS CCA 90 bp | CCTGAAAAGATGCGAGCGGTTCTGGCCGCAGCATCTCTGGCTTGCTaGATGTTCCGAATGGTTCAAACAAGCCCTTTCATAGAGACGCAG | + |
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Preference number: 5 (lower is better) Translates to: PEKMRAVLAAASLAC*MFRMVQTSPFIETQ Trigger: CTGCGTCTCTATGAAAGGGCTTGTTTGAACCATTCGGAACATCCAGCAAGCCAGAGATGCTGCGGCCAGAACCGCTCGCATCTTTTCAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000453716.1 |
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| CDS TCA 90 bp | AGACCAGAGCTCCAAGGCCACCGCCTTTTTCTCTCGGAGGCGCTCTaGCCTGTCAGTACCTCAGTTTCCTCTATCATACTTTTGCAACTC | + |
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Preference number: 5 (lower is better) Translates to: RPELQGHRLFLSEAL*PVSTSVSSIILLQL Trigger: GAGTTGCAAAAGTATGATAGAGGAAACTGAGGTACTGACAGGTCAGAGCGCCTCCGAGAGAAAAAGGCGGTGGCCTTGGAGCTCTGGTCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000453716.1 |
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| CDS TCA 90 bp | TTTGTTGCAAAAATTTGGCAGTTTAACCCAGAGTCTCAGGCAGCCTaGAAAGATGCGAGCGGTTCTGGCCGCAGCATCTCTGGCTTGCTG | + |
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Preference number: 5 (lower is better) Translates to: FVAKIWQFNPESQAA*KDASGSGRSISGLL Trigger: CAGCAAGCCAGAGATGCTGCGGCCAGAACCGCTCGCATCTTTTCAGGCTGCCTGAGACTCTGGGTTAAACTGCCAAATTTTTGCAACAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000453716.1 |
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| CDS TCA 90 bp | TTTCCAGTCAAAAGCACTGCTTTTTCTAAGAGGACTTCTGGTGAATaGCTTCTCTATGTCTTATTAATCGTAGATGCCGACCTCCCTGCT | + |
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Preference number: 5 (lower is better) Translates to: FPVKSTAFSKRTSGE*LLYVLLIVDADLPA Trigger: AGCAGGGAGGTCGGCATCTACGATTAATAAGACATAGAGAAGTCATTCACCAGAAGTCCTCTTAGAAAAAGCAGTGCTTTTGACTGGAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000453716.1 |
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| CDS TCA 72 bp | GGTCCTTCCCCGTCTGTAAGAGCTGACGGCTGGATCTaGCTCCAGATTAGACCACCAGGGGAAGAAAGGCCG | + |
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Preference number: 6 (lower is better) Translates to: GPSPSVRADGWI*LQIRPPGEERP Trigger: CGGCCTTTCTTCCCCTGGTGGTCTAATCTGGAGTCAGATCCAGCCGTCAGCTCTTACAGACGGGGAAGGACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000453716.1 |
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| CDS CAA 72 bp | CACTGGGTCCAGCCATCCGGTTTCACTCCTTCCCCATaGAACCGGCAGAATGCAACAGGAAGAGCGGGGATG | + |
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Preference number: 6 (lower is better) Translates to: HWVQPSGFTPSP*NRQNATGRAGM Trigger: CATCCCCGCTCTTCCTGTTGCATTCTGCCGGTTCAATGGGGAAGGAGTGAAACCGGATGGCTGGACCCAGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000453716.1 |
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| CDS CCA 72 bp | AGAGTCTCAGGCAGCCTGAAAAGATGCGAGCGGTTCTaGCCGCAGCATCTCTGGCTTGCTGGATGTTCCGAA | + |
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Preference number: 6 (lower is better) Translates to: RVSGSLKRCERF*PQHLWLAGCSE Trigger: TTCGGAACATCCAGCAAGCCAGAGATGCTGCGGCCAGAACCGCTCGCATCTTTTCAGGCTGCCTGAGACTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000453716.1 |
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| CDS CCA 72 bp | GGAAACAAAGGTGGCTCTGAAGTCATTTCCCCGCACTaGGTCCAGCCATCCGGTTTCACTCCTTCCCCATTG | + |
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Preference number: 6 (lower is better) Translates to: GNKGGSEVISPH*VQPSGFTPSPL Trigger: CAATGGGGAAGGAGTGAAACCGGATGGCTGGACCCAGTGCGGGGAAATGACTTCAGAGCCACCTTTGTTTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000453716.1 |
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| CDS GCA 72 bp | AAGATGCGAGCGGTTCTGGCCGCAGCATCTCTGGCTTaGTGGATGTTCCGAATGGTTCAAACAAGCCCTTTC | + |
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Preference number: 6 (lower is better) Translates to: KMRAVLAAASLA*WMFRMVQTSPF Trigger: GAAAGGGCTTGTTTGAACCATTCGGAACATCCAGCAAGCCAGAGATGCTGCGGCCAGAACCGCTCGCATCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000453716.1 |
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| CDS CCA 72 bp | CTGAAAAGATGCGAGCGGTTCTGGCCGCAGCATCTCTaGCTTGCTGGATGTTCCGAATGGTTCAAACAAGCC | + |
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Preference number: 6 (lower is better) Translates to: LKRCERFWPQHL*LAGCSEWFKQA Trigger: GGCTTGTTTGAACCATTCGGAACATCCAGCAAGCCAGAGATGCTGCGGCCAGAACCGCTCGCATCTTTTCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000453716.1 |
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| CDS CCA 72 bp | ATGCGAGCGGTTCTGGCCGCAGCATCTCTGGCTTGCTaGATGTTCCGAATGGTTCAAACAAGCCCTTTCATA | + |
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Preference number: 6 (lower is better) Translates to: MRAVLAAASLAC*MFRMVQTSPFI Trigger: TATGAAAGGGCTTGTTTGAACCATTCGGAACATCCAGCAAGCCAGAGATGCTGCGGCCAGAACCGCTCGCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000453716.1 |
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| CDS CAA 72 bp | AAAGATGCGAGCGGTTCTGGCCGCAGCATCTCTGGCTaGCTGGATGTTCCGAATGGTTCAAACAAGCCCTTT | + |
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Preference number: 6 (lower is better) Translates to: KDASGSGRSISG*LDVPNGSNKPF Trigger: AAAGGGCTTGTTTGAACCATTCGGAACATCCAGCAAGCCAGAGATGCTGCGGCCAGAACCGCTCGCATCTTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000453716.1 |
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| CDS TCA 72 bp | AAAATTTGGCAGTTTAACCCAGAGTCTCAGGCAGCCTaGAAAGATGCGAGCGGTTCTGGCCGCAGCATCTCT | + |
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Preference number: 6 (lower is better) Translates to: KIWQFNPESQAA*KDASGSGRSIS Trigger: AGAGATGCTGCGGCCAGAACCGCTCGCATCTTTTCAGGCTGCCTGAGACTCTGGGTTAAACTGCCAAATTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000453716.1 |
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| CDS CAA 72 bp | GTCTTATTAATCGTAGATGCCGACCTCCCTGCTCTCTaGTTCTGGAAGCCATATGGATGTTGCAAATATCCC | + |
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Preference number: 6 (lower is better) Translates to: VLLIVDADLPAL*FWKPYGCCKYP Trigger: GGGATATTTGCAACATCCATATGGCTTCCAGAACAAGAGAGCAGGGAGGTCGGCATCTACGATTAATAAGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000453716.1 |
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| CDS TCA 72 bp | AAAAGCACTGCTTTTTCTAAGAGGACTTCTGGTGAATaGCTTCTCTATGTCTTATTAATCGTAGATGCCGAC | + |
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Preference number: 6 (lower is better) Translates to: KSTAFSKRTSGE*LLYVLLIVDAD Trigger: GTCGGCATCTACGATTAATAAGACATAGAGAAGTCATTCACCAGAAGTCCTCTTAGAAAAAGCAGTGCTTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000453716.1 |
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