Pregenerated sensors for LINC00941 (Homo sapiens)
Ensembl gene IDs: ENSG00000235884Ensembl transcript IDs: ENST00000650286.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 72 bp | AGACCACATCCCTGTTCAAGGTCGCGAAACCACCGGTaGCGCCGGCAATCAGCGAGGTCCAGCGGGGCTGCG | + |
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Preference number: 6 (lower is better) Translates to: RPHPCSRSRNHR*RRQSARSSGAA Trigger: CGCAGCCCCGCTGGACCTCGCTGATTGCCGGCGGCACCGGTGGTTTCGCGACCTTGAACAGGGATGTGGTCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650286.1 |
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| CDS CCA 72 bp | GGACGGTTGCTTGGCCTAGGGAGGCTTCAACTAGGATaGCCTGAATCTGCTCCAGGTGATGGCTCATCCTCC | + |
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Preference number: 6 (lower is better) Translates to: GRLLGLGRLQLG*PESAPGDGSSS Trigger: GGAGGATGAGCCATCACCTGGAGCAGATTCAGGCCATCCTAGTTGAAGCCTCCCTAGGCCAAGCAACCGTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650286.1 |
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| CDS TCA 72 bp | GTCTCCTTTAGACACTTCTCGAGGGCGCTTCAAACCTaGAGGAGAACCCAATCAAGTTGTCAGCTGGCAAAT | + |
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Preference number: 6 (lower is better) Translates to: VSFRHFSRALQT*RRTQSSCQLAN Trigger: ATTTGCCAGCTGACAACTTGATTGGGTTCTCCTTCAGGTTTGAAGCGCCCTCGAGAAGTGTCTAAAGGAGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650286.1 |
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| CDS TCA 72 bp | TGGCGTCTGGTGAGGGCCTCCTTGCTGACTGATTCTTaGTACCAGTCTACTGCTTCTTTCATAATCAGTCAG | + |
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Preference number: 6 (lower is better) Translates to: WRLVRASLLTDS*YQSTASFIISQ Trigger: CTGACTGATTATGAAAGAAGCAGTAGACTGGTATCAAGAATCAGTCAGCAAGGAGGCCCTCACCAGACGCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650286.1 |
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| CDS TCA 72 bp | AGGAGAACCCAATCAAGTTGTCAGCTGGCAAATTATTaGAAGTATTTGGCTGAGTGTAGTGGTGCATGCTTG | + |
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Preference number: 6 (lower is better) Translates to: RRTQSSCQLANY*KYLAECSGACL Trigger: CAAGCATGCACCACTACACTCAGCCAAATACTTTCAATAATTTGCCAGCTGACAACTTGATTGGGTTCTCCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650286.1 |
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| CDS CCA 72 bp | TCTCTGAATAGTTTCCCCTATTCTGTGGGACTCTTCTaGTCTGGTCTGTTTTGTCTTTGTGCTGAATGTTCA | + |
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Preference number: 6 (lower is better) Translates to: SLNSFPYSVGLF*SGLFCLCAECS Trigger: TGAACATTCAGCACAAAGACAAAACAGACCAGACCAGAAGAGTCCCACAGAATAGGGGAAACTATTCAGAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000650286.1 |
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| CDS CAA 90 bp | GCTGGCCTGAAAAGGTCCACTACGTTAGAAGGATTTCGGTTTGTATaGTCAGTATGCCTATGCTTCTGCTACAGAACAAAACACCATAAA | + |
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Preference number: 6 (lower is better) Translates to: AGLKRSTTLEGFRFV*SVCLCFCYRTKHHK Trigger: TTTATGGTGTTTTGTTCTGTAGCAGAAGCATAGGCATACTGACAATACAAACCGAAATCCTTCTAACGTAGTGGACCTTTTCAGGCCAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000650286.1 |
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| CDS GCA 72 bp | TCAAATCAAGAGCCCAAACATTGTGAAAGTGATCTCTaGTATAAGATGGATACATGCTCCAGGTTTTCAAGG | + |
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Preference number: 6 (lower is better) Translates to: SNQEPKHCESDL*YKMDTCSRFSR Trigger: CCTTGAAAACCTGGAGCATGTATCCATCTTATAGCAGAGATCACTTTCACAATGTTTGGGCTCTTGATTTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650286.1 |
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| CDS CCA 72 bp | TTCAAACCTGAAGGAGAACCCAATCAAGTTGTCAGCTaGCAAATTATTGAAAGTATTTGGCTGAGTGTAGTG | + |
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Preference number: 6 (lower is better) Translates to: FKPEGEPNQVVS*QIIESIWLSVV Trigger: CACTACACTCAGCCAAATACTTTCAATAATTTGCCAGCTGACAACTTGATTGGGTTCTCCTTCAGGTTTGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650286.1 |
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| CDS GCA 72 bp | ACTACGTTAGAAGGATTTCGGTTTGTATTGTCAGTATaGCTATGCTTCTGCTACAGAACAAAACACCATAAA | + |
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Preference number: 6 (lower is better) Translates to: TTLEGFRFVLSV*LCFCYRTKHHK Trigger: TTTATGGTGTTTTGTTCTGTAGCAGAAGCATAGGCATACTGACAATACAAACCGAAATCCTTCTAACGTAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650286.1 |
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