Pregenerated sensors for LINC00920 (Homo sapiens)
Ensembl gene IDs: ENSG00000246898Ensembl transcript IDs: ENST00000499966.1
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GCTTTATGTAGTGCTCTAGGGAGGGCTGTTCTAGCTCCTGCCCAATaGCCTGTGTCTATAGGCCTTTCCCTGCTCAGCCAGCAAAAGCCA | + |
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Preference number: 5 (lower is better) Translates to: ALCSALGRAVLAPAQ*PVSIGLSLLSQQKP Trigger: TGGCTTTTGCTGGCTGAGCAGGGAAAGGCCTATAGACACAGGGCATTGGGCAGGAGCTAGAACAGCCCTCCCTAGAGCACTACATAAAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000499966.1 |
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| CDS TCA 90 bp | GGCCAGATGCGGAATCCCAGATTTGGTGAGCTGAGAATTCCCGTGTaGTGGAAGAACTCTAAGATGACCCCAAATTATCCCCACCGCTGG | + |
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Preference number: 5 (lower is better) Translates to: GQMRNPRFGELRIPV*WKNSKMTPNYPHRW Trigger: CCAGCGGTGGGGATAATTTGGGGTCATCTTAGAGTTCTTCCATCACACGGGAATTCTCAGCTCACCAAATCTGGGATTCCGCATCTGGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000499966.1 |
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| CDS GCA 90 bp | GGATCCATGTTTAGCTTCAGATGTCCTGTCTTATCTCCCAAGCCCTaGCCAGTACATGCTGCTGTTTTGCTTCAGGGCTGTTGTCACCAA | + |
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Preference number: 5 (lower is better) Translates to: GSMFSFRCPVLSPKP*PVHAAVLLQGCCHQ Trigger: TTGGTGACAACAGCCCTGAAGCAAAACAGCAGCATGTACTGGGCAGGGCTTGGGAGATAAGACAGGACATCTGAAGCTAAACATGGATCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000499966.1 |
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| CDS GCA 90 bp | CAAACCCTGGGTTTATTAGCTGATCCAAATGGACACTCAAAAATATaGCAGGCCTTCAGCTTAAGGAATGGCCAGATGCGGAATCCCAGA | + |
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Preference number: 5 (lower is better) Translates to: QTLGLLADPNGHSKI*QAFSLRNGQMRNPR Trigger: TCTGGGATTCCGCATCTGGCCATTCCTTAAGCTGAAGGCCTGGCATATTTTTGAGTGTCCATTTGGATCAGCTAATAAACCCAGGGTTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000499966.1 |
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| CDS TCA 90 bp | AGAAATACTCAAATTTACAGAGCCAGTGACAAAGGAAGATCCAGATaGGTTGGGCAAATTAACAAAAAGAGTATCGACAAGGCAGATAAA | + |
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Preference number: 5 (lower is better) Translates to: RNTQIYRASDKGRSR*VGQINKKSIDKADK Trigger: TTTATCTGCCTTGTCGATACTCTTTTTGTTAATTTGCCCAACTCATCTGGATCTTCCTTTGTCACTGGCTCTGTAAATTTGAGTATTTCT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000499966.1 |
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| CDS CAA 90 bp | AGTGGACTCTCTCTCTCGCAGGCTTTGATGAAGCAGGTGAGCATGTaGGGGAGGCCCTCAGTTCAACGGGCTGCAAGGACTGAATTCATT | + |
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Preference number: 6 (lower is better) Translates to: SGLSLSQALMKQVSM*GRPSVQRAARTEFI Trigger: AATGAATTCAGTCCTTGCAGCCCGTTGAACTGAGGGCCTCCCCAACATGCTCACCTGCTTCATCAAAGCCTGCGAGAGAGAGAGTCCACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000499966.1 |
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| CDS GCA 72 bp | TATCTCCCAAGCCCTGCCCAGTACATGCTGCTGTTTTaGTTCAGGGCTGTTGTCACCAAGTTCTTAGTGCTG | + |
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Preference number: 6 (lower is better) Translates to: YLPSPAQYMLLF*FRAVVTKFLVL Trigger: CAGCACTAAGAACTTGGTGACAACAGCCCTGAAGCAAAACAGCAGCATGTACTGGGCAGGGCTTGGGAGATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000499966.1 |
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| CDS GCA 72 bp | TTTAGCTTCAGATGTCCTGTCTTATCTCCCAAGCCCTaGCCAGTACATGCTGCTGTTTTGCTTCAGGGCTGT | + |
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Preference number: 6 (lower is better) Translates to: FSFRCPVLSPKP*PVHAAVLLQGC Trigger: ACAGCCCTGAAGCAAAACAGCAGCATGTACTGGGCAGGGCTTGGGAGATAAGACAGGACATCTGAAGCTAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000499966.1 |
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| CDS CAA 72 bp | TTATCTCCCAAGCCCTGCCCAGTACATGCTGCTGTTTaGCTTCAGGGCTGTTGTCACCAAGTTCTTAGTGCT | + |
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Preference number: 6 (lower is better) Translates to: LSPKPCPVHAAV*LQGCCHQVLSA Trigger: AGCACTAAGAACTTGGTGACAACAGCCCTGAAGCAAAACAGCAGCATGTACTGGGCAGGGCTTGGGAGATAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000499966.1 |
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| CDS TCA 72 bp | CGGAATCCCAGATTTGGTGAGCTGAGAATTCCCGTGTaGTGGAAGAACTCTAAGATGACCCCAAATTATCCC | + |
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Preference number: 6 (lower is better) Translates to: RNPRFGELRIPV*WKNSKMTPNYP Trigger: GGGATAATTTGGGGTCATCTTAGAGTTCTTCCATCACACGGGAATTCTCAGCTCACCAAATCTGGGATTCCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000499966.1 |
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| CDS GCA 72 bp | GGTTTATTAGCTGATCCAAATGGACACTCAAAAATATaGCAGGCCTTCAGCTTAAGGAATGGCCAGATGCGG | + |
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Preference number: 6 (lower is better) Translates to: GLLADPNGHSKI*QAFSLRNGQMR Trigger: CCGCATCTGGCCATTCCTTAAGCTGAAGGCCTGGCATATTTTTGAGTGTCCATTTGGATCAGCTAATAAACC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000499966.1 |
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| CDS CAA 72 bp | TCCTTTTCTCAAAGCTGTTTGGCTCTTCTACATTCTTaGGATTTTTATGTGAATGTTGGAATCAGCTTGTCA | + |
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Preference number: 6 (lower is better) Translates to: SFSQSCLALLHS*DFYVNVGISLS Trigger: TGACAAGCTGATTCCAACATTCACATAAAAATCCAAAGAATGTAGAAGAGCCAAACAGCTTTGAGAAAAGGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000499966.1 |
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| CDS TCA 72 bp | AGTTGCATCTGTCAATTTTTAACACTTTGTCTCTCTTaGTCCATCACTCATATATTTGCTAGTGAGTCTTCA | + |
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Preference number: 6 (lower is better) Translates to: SCICQFLTLCLS*SITHIFASESS Trigger: TGAAGACTCACTAGCAAATATATGAGTGATGGATCAAGAGAGACAAAGTGTTAAAAATTGACAGATGCAACT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000499966.1 |
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