Pregenerated sensors for LINC00911 (Homo sapiens)
Ensembl gene IDs: ENSG00000259107Ensembl transcript IDs: ENST00000555272.2, ENST00000557155.1, ENST00000656206.1, ENST00000662110.1, ENST00000667555.1, ENST00000668320.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CAGAAAGGAGCTGTATATTTCATTGACCCATTCTTAATTCCTTATTaGTCATGTCACCCCACTCTCCTCCTCACGCATATTGCTCGAACC | + |
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Preference number: 5 (lower is better) Translates to: QKGAVYFIDPFLIPY*SCHPTLLLTHIART Trigger: GGTTCGAGCAATATGCGTGAGGAGGAGAGTGGGGTGACATGAGCAATAAGGAATTAAGAATGGGTCAATGAAATATACAGCTCCTTTCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668320.1 |
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| CDS TCA 90 bp | TTTTGTTTTAGAGGGAGTCTGAAACTCCTCTATTACCCTTGTCCCTaGAAGGCACAGAAAGGTCAGGATATCCATGGTTGTAGCAGAACA | + |
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Preference number: 5 (lower is better) Translates to: FCFRGSLKLLYYPCP*KAQKGQDIHGCSRT Trigger: TGTTCTGCTACAACCATGGATATCCTGACCTTTCTGTGCCTTTCAGGGACAAGGGTAATAGAGGAGTTTCAGACTCCCTCTAAAACAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENST00000555272.2 ENST00000557155.1 ENST00000656206.1 ENST00000662110.1 ENST00000667555.1 ENST00000668320.1 |
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| CDS CCA 90 bp | ATAAATCTTCCCACATGGGGATATTTGATTCCACTACCGTGTAGATaGCCACTAGGTATGGGATGTGGAAGGTATAAAGTAAACTCACAC | + |
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Preference number: 5 (lower is better) Translates to: INLPTWGYLIPLPCR*PLGMGCGRYKVNSH Trigger: GTGTGAGTTTACTTTATACCTTCCACATCCCATACCTAGTGGCCATCTACACGGTAGTGGAATCAAATATCCCCATGTGGGAAGATTTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668320.1 |
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| CDS CAA 72 bp | ATTGCTCATGTCACCCCACTCTCCTCCTCACGCATATaGCTCGAACCATGTTCACTGACCTTCATGCTTTCT | + |
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Preference number: 6 (lower is better) Translates to: IAHVTPLSSSRI*LEPCSLTFMLS Trigger: AGAAAGCATGAAGGTCAGTGAACATGGTTCGAGCAATATGCGTGAGGAGGAGAGTGGGGTGACATGAGCAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668320.1 |
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| CDS TCA 72 bp | AGAGGGAGTCTGAAACTCCTCTATTACCCTTGTCCCTaGAAGGCACAGAAAGGTCAGGATATCCATGGTTGT | + |
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Preference number: 6 (lower is better) Translates to: RGSLKLLYYPCP*KAQKGQDIHGC Trigger: ACAACCATGGATATCCTGACCTTTCTGTGCCTTTCAGGGACAAGGGTAATAGAGGAGTTTCAGACTCCCTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000555272.2 ENST00000557155.1 ENST00000656206.1 ENST00000662110.1 ENST00000667555.1 ENST00000668320.1 |
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| CDS CCA 72 bp | CCCACATGGGGATATTTGATTCCACTACCGTGTAGATaGCCACTAGGTATGGGATGTGGAAGGTATAAAGTA | + |
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Preference number: 6 (lower is better) Translates to: PTWGYLIPLPCR*PLGMGCGRYKV Trigger: TACTTTATACCTTCCACATCCCATACCTAGTGGCCATCTACACGGTAGTGGAATCAAATATCCCCATGTGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668320.1 |
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| CDS CAA 90 bp | CTGTATCCTTTGAGGAAACAAATAAATCTTCCCACATGGGGATATTaGATTCCACTACCGTGTAGATGGCCACTAGGTATGGGATGTGGA | + |
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Preference number: 6 (lower is better) Translates to: LYPLRKQINLPTWGY*IPLPCRWPLGMGCG Trigger: TCCACATCCCATACCTAGTGGCCATCTACACGGTAGTGGAATCAAATATCCCCATGTGGGAAGATTTATTTGTTTCCTCAAAGGATACAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668320.1 |
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| CDS CAA 72 bp | TTTTTATGTCAAACTGCAGTCAGTCTGGAGGTGGTGTaGAAGATGGTTATGAATGTTACAGAGCGAGCTAGG | + |
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Preference number: 6 (lower is better) Translates to: FLCQTAVSLEVV*KMVMNVTERAR Trigger: CCTAGCTCGCTCTGTAACATTCATAACCATCTTCAACACCACCTCCAGACTGACTGCAGTTTGACATAAAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000662110.1 |
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| CDS GCA 72 bp | GCTGTATATTTCATTGACCCATTCTTAATTCCTTATTaGTCATGTCACCCCACTCTCCTCCTCACGCATATT | + |
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Preference number: 6 (lower is better) Translates to: AVYFIDPFLIPY*SCHPTLLLTHI Trigger: AATATGCGTGAGGAGGAGAGTGGGGTGACATGAGCAATAAGGAATTAAGAATGGGTCAATGAAATATACAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668320.1 |
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| CDS CAA 72 bp | TTGAGGAAACAAATAAATCTTCCCACATGGGGATATTaGATTCCACTACCGTGTAGATGGCCACTAGGTATG | + |
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Preference number: 6 (lower is better) Translates to: LRKQINLPTWGY*IPLPCRWPLGM Trigger: CATACCTAGTGGCCATCTACACGGTAGTGGAATCAAATATCCCCATGTGGGAAGATTTATTTGTTTCCTCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668320.1 |
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| CDS TCA 72 bp | AACAGGTACATTCCAGAAAGGAGCTGTATATTTCATTaGCCCATTCTTAATTCCTTATTGCTCATGTCACCC | + |
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Preference number: 6 (lower is better) Translates to: NRYIPERSCIFH*PILNSLLLMSP Trigger: GGGTGACATGAGCAATAAGGAATTAAGAATGGGTCAATGAAATATACAGCTCCTTTCTGGAATGTACCTGTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668320.1 |
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| CDS TCA 72 bp | AACAGGTACATTCCAGAAAGGAGCTGTATATTTCATTaGCCCATTCTTAATTCCATTACATCATGCTACAGA | + |
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Preference number: 6 (lower is better) Translates to: NRYIPERSCIFH*PILNSITSCYR Trigger: TCTGTAGCATGATGTAATGGAATTAAGAATGGGTCAATGAAATATACAGCTCCTTTCTGGAATGTACCTGTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000662110.1 |
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