Pregenerated sensors for LINC00891 (Homo sapiens)
Ensembl gene IDs: ENSG00000281852Ensembl transcript IDs: ENST00000627173.1
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GAGGCCTCACAATCATGGCAGAAGGCGAAGGAGGAGCAAAGGATGTaGGTTACATGGCGACAGGGAAGACAGCATGTGCAGGGGAACTGC | + |
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Preference number: 5 (lower is better) Translates to: EASQSWQKAKEEQRM*VTWRQGRQHVQGNC Trigger: GCAGTTCCCCTGCACATGCTGTCTTCCCTGTCGCCATGTAACGCACATCCTTTGCTCCTCCTTCGCCTTCTGCCATGATTGTGAGGCCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000627173.1 |
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| CDS GCA 90 bp | AGAGGAGAACACCGCCAGCATTCCCCAAAGCTCCTGGGGTGTCTCTaGCTGATCTCAGCCTCATTCCTCCTTCAAGAGGAAACCAACACA | + |
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Preference number: 5 (lower is better) Translates to: RGEHRQHSPKLLGCL*LISASFLLQEETNT Trigger: TGTGTTGGTTTCCTCTTGAAGGAGGAATGAGGCTGAGATCAGGCAGAGACACCCCAGGAGCTTTGGGGAATGCTGGCGGTGTTCTCCTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000627173.1 |
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| CDS TCA 90 bp | GAGAACACCGCCAGCATTCCCCAAAGCTCCTGGGGTGTCTCTGCCTaGTCTCAGCCTCATTCCTCCTTCAAGAGGAAACCAACACATTTA | + |
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Preference number: 5 (lower is better) Translates to: ENTASIPQSSWGVSA*SQPHSSFKRKPTHL Trigger: TAAATGTGTTGGTTTCCTCTTGAAGGAGGAATGAGGCTGAGATCAGGCAGAGACACCCCAGGAGCTTTGGGGAATGCTGGCGGTGTTCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000627173.1 |
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| CDS CCA 90 bp | ACCTACAACTATCTGGTCTTTGACAAACCTGACGAAAGCAAGCAATaGGGAAAGGATTCCCTATTCAGCAAACGGTGCTGGGATAACTGG | + |
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Preference number: 5 (lower is better) Translates to: TYNYLVFDKPDESKQ*GKDSLFSKRCWDNW Trigger: CCAGTTATCCCAGCACCGTTTGCTGAATAGGGAATCCTTTCCCCATTGCTTGCTTTCGTCAGGTTTGTCAAAGACCAGATAGTTGTAGGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627173.1 |
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| CDS CCA 90 bp | CCACAACACGTGGGGATTATGGGAGCTACAGTTCAAGAGGAGATTTaGGTGGGAACACAGCCAAACTATATCACACCATACACAAAAGTT | + |
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Preference number: 5 (lower is better) Translates to: PQHVGIMGATVQEEI*VGTQPNYITPYTKV Trigger: AACTTTTGTGTATGGTGTGATATAGTTTGGCTGTGTTCCCACCCAAATCTCCTCTTGAACTGTAGCTCCCATAATCCCCACGTGTTGTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000627173.1 |
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| CDS TCA 90 bp | AGGAGCAGGAAAAATAACGAATGGGTACTAGGCTTAATCACTGGGTaGCGAAACAATTTCTACAAGAAACCCCCACGACACAAGTTTACC | + |
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Preference number: 5 (lower is better) Translates to: RSRKNNEWVLGLITG*RNNFYKKPPRHKFT Trigger: GGTAAACTTGTGTCGTGGGGGTTTCTTGTAGAAATTGTTTCGTCACCCAGTGATTAAGCCTAGTACCCATTCGTTATTTTTCCTGCTCCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000627173.1 |
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| CDS TCA 90 bp | TGCTACACACACCAAGATACCCAGGAATACACCACACCAGGGAGGTaGAAGATCTCTACAAGAAGAACTACAAAATACTGCTCAAGGAAA | + |
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Preference number: 5 (lower is better) Translates to: CYTHQDTQEYTTPGR*KISTRRTTKYCSRK Trigger: TTTCCTTGAGCAGTATTTTGTAGTTCTTCTTGTAGAGATCTTTCACCTCCCTGGTGTGGTGTATTCCTGGGTATCTTGGTGTGTGTAGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000627173.1 |
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| CDS TCA 90 bp | GGAAATCAGAGACGTGACAAACAAATGGAAAAACATTTCTGCTCATaGATAGGAAGAATCAATATCATTAAAGTGGCCATACTGCCCAAA | + |
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Preference number: 5 (lower is better) Translates to: GNQRRDKQMEKHFCS*IGRINIIKVAILPK Trigger: TTTGGGCAGTATGGCCACTTTAATGATATTGATTCTTCCTATTCATGAGCAGAAATGTTTTTCCATTTGTTTGTCACGTCTCTGATTTCC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000627173.1 |
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| CDS CCA 72 bp | CAGAAGGCGAAGGAGGAGCAAAGGATGTGCGTTACATaGCGACAGGGAAGACAGCATGTGCAGGGGAACTGC | + |
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Preference number: 6 (lower is better) Translates to: QKAKEEQRMCVT*RQGRQHVQGNC Trigger: GCAGTTCCCCTGCACATGCTGTCTTCCCTGTCGCCATGTAACGCACATCCTTTGCTCCTCCTTCGCCTTCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000627173.1 |
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| CDS GCA 72 bp | CAATCATGGCAGAAGGCGAAGGAGGAGCAAAGGATGTaGGTTACATGGCGACAGGGAAGACAGCATGTGCAG | + |
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Preference number: 6 (lower is better) Translates to: QSWQKAKEEQRM*VTWRQGRQHVQ Trigger: CTGCACATGCTGTCTTCCCTGTCGCCATGTAACGCACATCCTTTGCTCCTCCTTCGCCTTCTGCCATGATTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627173.1 |
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| CDS CCA 72 bp | TCACAGTTCCACATGCCTTGGGAGGCCTCACAATCATaGCAGAAGGCGAAGGAGGAGCAAAGGATGTGCGTT | + |
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Preference number: 6 (lower is better) Translates to: SQFHMPWEASQS*QKAKEEQRMCV Trigger: AACGCACATCCTTTGCTCCTCCTTCGCCTTCTGCCATGATTGTGAGGCCTCCCAAGGCATGTGGAACTGTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627173.1 |
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| CDS CCA 72 bp | CTCAATTACCGCCCACCGGATCCCTCCCACAACACGTaGGGATTATGGGAGCTACAGTTCAAGAGGAGATTT | + |
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Preference number: 6 (lower is better) Translates to: LNYRPPDPSHNT*GLWELQFKRRF Trigger: AAATCTCCTCTTGAACTGTAGCTCCCATAATCCCCACGTGTTGTGGGAGGGATCCGGTGGGCGGTAATTGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627173.1 |
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| CDS CCA 72 bp | AAAAGAAGTTTAACGGACTCACAGTTCCACATGCCTTaGGAGGCCTCACAATCATGGCAGAAGGCGAAGGAG | + |
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Preference number: 6 (lower is better) Translates to: KRSLTDSQFHMP*EASQSWQKAKE Trigger: CTCCTTCGCCTTCTGCCATGATTGTGAGGCCTCCCAAGGCATGTGGAACTGTGAGTCCGTTAAACTTCTTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000627173.1 |
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| CDS CAA 72 bp | GAAAAGAAGTTTAACGGACTCACAGTTCCACATGCCTaGGGAGGCCTCACAATCATGGCAGAAGGCGAAGGA | + |
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Preference number: 6 (lower is better) Translates to: EKKFNGLTVPHA*GGLTIMAEGEG Trigger: TCCTTCGCCTTCTGCCATGATTGTGAGGCCTCCCAAGGCATGTGGAACTGTGAGTCCGTTAAACTTCTTTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000627173.1 |
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| CDS TCA 72 bp | ATCGCATATTCCCACTTACAAGTGGGAGCTAAACCATaGGAACACGGGGACACAAAGAGGGGAACAACACAC | + |
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Preference number: 6 (lower is better) Translates to: IAYSHLQVGAKP*EHGDTKRGTTH Trigger: GTGTGTTGTTCCCCTCTTTGTGTCCCCGTGTTCTCATGGTTTAGCTCCCACTTGTAAGTGGGAATATGCGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000627173.1 |
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| CDS CAA 90 bp | CCCACAACACGTGGGGATTATGGGAGCTACAGTTCAAGAGGAGATTaGGGTGGGAACACAGCCAAACTATATCACACCATACACAAAAGT | + |
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Preference number: 6 (lower is better) Translates to: PTTRGDYGSYSSRGD*GGNTAKLYHTIHKS Trigger: ACTTTTGTGTATGGTGTGATATAGTTTGGCTGTGTTCCCACCCAAATCTCCTCTTGAACTGTAGCTCCCATAATCCCCACGTGTTGTGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000627173.1 |
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| CDS CCA 72 bp | GTGGGGATTATGGGAGCTACAGTTCAAGAGGAGATTTaGGTGGGAACACAGCCAAACTATATCACACCATAC | + |
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Preference number: 6 (lower is better) Translates to: VGIMGATVQEEI*VGTQPNYITPY Trigger: GTATGGTGTGATATAGTTTGGCTGTGTTCCCACCCAAATCTCCTCTTGAACTGTAGCTCCCATAATCCCCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000627173.1 |
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| CDS CCA 72 bp | TATCTGGTCTTTGACAAACCTGACGAAAGCAAGCAATaGGGAAAGGATTCCCTATTCAGCAAACGGTGCTGG | + |
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Preference number: 6 (lower is better) Translates to: YLVFDKPDESKQ*GKDSLFSKRCW Trigger: CCAGCACCGTTTGCTGAATAGGGAATCCTTTCCCCATTGCTTGCTTTCGTCAGGTTTGTCAAAGACCAGATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627173.1 |
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| CDS CAA 72 bp | CGTGGGGATTATGGGAGCTACAGTTCAAGAGGAGATTaGGGTGGGAACACAGCCAAACTATATCACACCATA | + |
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Preference number: 6 (lower is better) Translates to: RGDYGSYSSRGD*GGNTAKLYHTI Trigger: TATGGTGTGATATAGTTTGGCTGTGTTCCCACCCAAATCTCCTCTTGAACTGTAGCTCCCATAATCCCCACG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000627173.1 |
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| CDS CAA 90 bp | ATTTATAAAGAAAAGAAGTTTAACGGACTCACAGTTCCACATGCCTaGGGAGGCCTCACAATCATGGCAGAAGGCGAAGGAGGAGCAAAG | + |
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Preference number: 6 (lower is better) Translates to: IYKEKKFNGLTVPHA*GGLTIMAEGEGGAK Trigger: CTTTGCTCCTCCTTCGCCTTCTGCCATGATTGTGAGGCCTCCCAAGGCATGTGGAACTGTGAGTCCGTTAAACTTCTTTTCTTTATAAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000627173.1 |
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| CDS GCA 72 bp | AGAGAGCCAAATCGGGAACACAGTCCCATTCATAATTaGTACACACACCAAGATACCCAGGAATACACCACA | + |
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Preference number: 6 (lower is better) Translates to: REPNREHSPIHN*YTHQDTQEYTT Trigger: TGTGGTGTATTCCTGGGTATCTTGGTGTGTGTAGCAATTATGAATGGGACTGTGTTCCCGATTTGGCTCTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627173.1 |
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| CDS TCA 72 bp | CACCAAGATACCCAGGAATACACCACACCAGGGAGGTaGAAGATCTCTACAAGAAGAACTACAAAATACTGC | + |
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Preference number: 6 (lower is better) Translates to: HQDTQEYTTPGR*KISTRRTTKYC Trigger: GCAGTATTTTGTAGTTCTTCTTGTAGAGATCTTTCACCTCCCTGGTGTGGTGTATTCCTGGGTATCTTGGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000627173.1 |
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| CDS TCA 72 bp | ACAGCATGTGCAGGGGAACTGCCCTTTATAAAACCATaGGATCTCATGAGACTTATTCGCTATCATGAGAAC | + |
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Preference number: 6 (lower is better) Translates to: TACAGELPFIKP*DLMRLIRYHEN Trigger: GTTCTCATGATAGCGAATAAGTCTCATGAGATCTCATGGTTTTATAAAGGGCAGTTCCCCTGCACATGCTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000627173.1 |
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| CDS CCA 72 bp | ACAGAAAACCAAATATCGCATATTCCCACTTACAAGTaGGAGCTAAACCATGAGAACACGGGGACACAAAGA | + |
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Preference number: 6 (lower is better) Translates to: TENQISHIPTYK*ELNHENTGTQR Trigger: TCTTTGTGTCCCCGTGTTCTCATGGTTTAGCTCCCACTTGTAAGTGGGAATATGCGATATTTGGTTTTCTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000627173.1 |
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| CDS TCA 72 bp | AGAGAACCTCACAATATGTGTGTGTTGTTTAATAAGTaGTTATCAAGGGCACCTCTACAGAAACACCCCCAT | + |
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Preference number: 6 (lower is better) Translates to: REPHNMCVLFNK*LSRAPLQKHPH Trigger: ATGGGGGTGTTTCTGTAGAGGTGCCCTTGATAATCACTTATTAAACAACACACACATATTGTGAGGTTCTCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000627173.1 |
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| CDS CAA 72 bp | AAAAAGAATGAGATCAGGTCCTTTGCAGGAACATGGTaGGATCTGGAGACCATTATCCTTAGCAAACTAATG | + |
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Preference number: 6 (lower is better) Translates to: KKNEIRSFAGTW*DLETIILSKLM Trigger: CATTAGTTTGCTAAGGATAATGGTCTCCAGATCCAACCATGTTCCTGCAAAGGACCTGATCTCATTCTTTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000627173.1 |
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| CDS TCA 72 bp | AGACAGAAATACCATTCGGCCCAGCAATCTCATCGCTaGGCATATACCCAAAGGAATATAATAAATCATTCT | + |
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Preference number: 6 (lower is better) Translates to: RQKYHSAQQSHR*AYTQRNIINHS Trigger: AGAATGATTTATTATATTCCTTTGGGTATATGCTCAGCGATGAGATTGCTGGGCCGAATGGTATTTCTGTCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627173.1 |
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| CDS TCA 72 bp | TCAACTTCAGCAAAGTCTCAGGATACCAAATCAATGTaGAAAATCGCTAACATTCGTATACACCAACAACAG | + |
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Preference number: 6 (lower is better) Translates to: STSAKSQDTKSM*KIANIRIHQQQ Trigger: CTGTTGTTGGTGTATACGAATGTTAGCGATTTTTCACATTGATTTGGTATCCTGAGACTTTGCTGAAGTTGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000627173.1 |
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| CDS TCA 72 bp | AATCATTTTCTGGATAAGGAATGGGCAAAGATTTCATaGCGAAGACACCAAGAGCAATTACAACAAAAGCAA | + |
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Preference number: 6 (lower is better) Translates to: NHFLDKEWAKIS*RRHQEQLQQKQ Trigger: TTGCTTTTGTTGTAATTGCTCTTGGTGTCTTCGTCATGAAATCTTTGCCCATTCCTTATCCAGAAAATGATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000627173.1 |
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| CDS CCA 72 bp | TTTGCAGATTCAATGCGATTCCTATTAAGTTACCTTTaGCATTCTTCACAGTACGAGGAAACCTATTTTAAA | + |
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Preference number: 6 (lower is better) Translates to: FADSMRFLLSYL*HSSQYEETYFK Trigger: TTTAAAATAGGTTTCCTCGTACTGTGAAGAATGCCAAAGGTAACTTAATAGGAATCGCATTGAATCTGCAAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000627173.1 |
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