Pregenerated sensors for LINC00888 (Homo sapiens)
Ensembl gene IDs: ENSG00000240024Ensembl transcript IDs: ENST00000468380.1, ENST00000471496.5, ENST00000482098.1, ENST00000487386.1
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | ACGCTGCAGAGGTTGCCGCCATGTCCCCTCGGACCGGCCGCTTGGTaGAGTGCGGCTGCGTCTCCGTTGTCGTCCACATCACCTCCGTTC | + |
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Preference number: 5 (lower is better) Translates to: TLQRLPPCPLGPAAW*SAAASPLSSTSPPF Trigger: GAACGGAGGTGATGTGGACGACAACGGAGACGCAGCCGCACTTCACCAAGCGGCCGGTCCGAGGGGACATGGCGGCAACCTCTGCAGCGT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000471496.5 |
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| CDS CCA 90 bp | GCGCCCCCACGCACCGATCCACCGCGGCTTTATGCCTCGTCACCTTaGCAACAGCAGCGGGCTCAGGCAGTGTCGCCACCAGTTTCTTGC | + |
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Preference number: 5 (lower is better) Translates to: APPRTDPPRLYASSP*QQQRAQAVSPPVSC Trigger: GCAAGAAACTGGTGGCGACACTGCCTGAGCCCGCTGCTGTTGCCAAGGTGACGAGGCATAAAGCCGCGGTGGATCGGTGCGTGGGGGCGC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000468380.1 |
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| CDS CCA 90 bp | AAGACAGAGGCCTGGCTGCAGAAGGACGCCCTCTGGAAGGGGGACTaGAAGCCGAATCCCCTGACAAGCGGTCGCGGTCCTGTCTTTCCG | + |
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Preference number: 5 (lower is better) Translates to: KTEAWLQKDALWKGD*KPNPLTSGRGPVFP Trigger: CGGAAAGACAGGACCGCGACCGCTTGTCAGGGGATTCGGCTTCCAGTCCCCCTTCCAGAGGGCGTCCTTCTGCAGCCAGGCCTCTGTCTT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000468380.1 |
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| CDS TCA 90 bp | TGCAGAAGGACGCCCTCTGGAAGGGGGACTGGAAGCCGAATCCCCTaGCAAGCGGTCGCGGTCCTGTCTTTCCGCTCGAGCTTCGTTCTC | + |
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Preference number: 5 (lower is better) Translates to: CRRTPSGRGTGSRIP*QAVAVLSFRSSFVL Trigger: GAGAACGAAGCTCGAGCGGAAAGACAGGACCGCGACCGCTTGTCAGGGGATTCGGCTTCCAGTCCCCCTTCCAGAGGGCGTCCTTCTGCA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000468380.1 |
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| CDS CCA 90 bp | GATAGTGCCACTGCACTCCAGCATGGTGATGAAGTGAGACTCGTGTaGGGGCGGGGGAAGACAGAGGCCTGGCTGCAGAAGGACGCCCTC | + |
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Preference number: 5 (lower is better) Translates to: DSATALQHGDEVRLV*GRGKTEAWLQKDAL Trigger: GAGGGCGTCCTTCTGCAGCCAGGCCTCTGTCTTCCCCCGCCCCCACACGAGTCTCACTTCATCACCATGCTGGAGTGCAGTGGCACTATC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000468380.1 |
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| CDS GCA 90 bp | TCTGAACTGGGCAGGACCACTTACACGTGGCTTTTCTTCTCCTTCTaGCACCCTTTAGACAGCAAGACCAACCCCTCCACTCTCTCCTCC | + |
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Preference number: 5 (lower is better) Translates to: SELGRTTYTWLFFSF*HPLDSKTNPSTLSS Trigger: GGAGGAGAGAGTGGAGGGGTTGGTCTTGCTGTCTAAAGGGTGGCAGAAGGAGAAGAAAAGCCACGTGTAAGTGGTCCTGCCCAGTTCAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000482098.1 |
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| CDS CCA 90 bp | ACCCTTGAAGGAAACGGGTCTGAACTGGGCAGGACCACTTACACGTaGCTTTTCTTCTCCTTCTGCCACCCTTTAGACAGCAAGACCAAC | + |
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Preference number: 5 (lower is better) Translates to: TLEGNGSELGRTTYT*LFFSFCHPLDSKTN Trigger: GTTGGTCTTGCTGTCTAAAGGGTGGCAGAAGGAGAAGAAAAGCCACGTGTAAGTGGTCCTGCCCAGTTCAGACCCGTTTCCTTCAAGGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000482098.1 |
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| CDS GCA 72 bp | CCCCGCGCCCCCACGCACCGATCCACCGCGGCTTTATaGCTCGTCACCTTGGCAACAGCAGCGGGCTCAGGC | + |
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Preference number: 6 (lower is better) Translates to: PRAPTHRSTAAL*LVTLATAAGSG Trigger: GCCTGAGCCCGCTGCTGTTGCCAAGGTGACGAGGCATAAAGCCGCGGTGGATCGGTGCGTGGGGGCGCGGGG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000468380.1 |
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| CDS GCA 72 bp | GCCGCCATGTCCCCTCGGACCGGCCGCTTGGTGAAGTaGGGCTGCGTCTCCGTTGTCGTCCACATCACCTCC | + |
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Preference number: 6 (lower is better) Translates to: AAMSPRTGRLVK*GCVSVVVHITS Trigger: GGAGGTGATGTGGACGACAACGGAGACGCAGCCGCACTTCACCAAGCGGCCGGTCCGAGGGGACATGGCGGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000471496.5 |
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| CDS CAA 72 bp | GCAGAGGTTGCCGCCATGTCCCCTCGGACCGGCCGCTaGGTGAAGTGCGGCTGCGTCTCCGTTGTCGTCCAC | + |
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Preference number: 6 (lower is better) Translates to: AEVAAMSPRTGR*VKCGCVSVVVH Trigger: GTGGACGACAACGGAGACGCAGCCGCACTTCACCAAGCGGCCGGTCCGAGGGGACATGGCGGCAACCTCTGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000471496.5 |
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| CDS CCA 72 bp | GCCTGGCTGCAGAAGGACGCCCTCTGGAAGGGGGACTaGAAGCCGAATCCCCTGACAAGCGGTCGCGGTCCT | + |
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Preference number: 6 (lower is better) Translates to: AWLQKDALWKGD*KPNPLTSGRGP Trigger: AGGACCGCGACCGCTTGTCAGGGGATTCGGCTTCCAGTCCCCCTTCCAGAGGGCGTCCTTCTGCAGCCAGGC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000468380.1 |
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| CDS CAA 90 bp | CGCGCCCCCACGCACCGATCCACCGCGGCTTTATGCCTCGTCACCTaGGCAACAGCAGCGGGCTCAGGCAGTGTCGCCACCAGTTTCTTG | + |
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Preference number: 6 (lower is better) Translates to: RAPTHRSTAALCLVT*ATAAGSGSVATSFL Trigger: CAAGAAACTGGTGGCGACACTGCCTGAGCCCGCTGCTGTTGCCAAGGTGACGAGGCATAAAGCCGCGGTGGATCGGTGCGTGGGGGCGCG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000468380.1 |
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| CDS CAA 90 bp | ACTGACGCTGCAGAGGTTGCCGCCATGTCCCCTCGGACCGGCCGCTaGGTGAAGTGCGGCTGCGTCTCCGTTGTCGTCCACATCACCTCC | + |
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Preference number: 6 (lower is better) Translates to: TDAAEVAAMSPRTGR*VKCGCVSVVVHITS Trigger: GGAGGTGATGTGGACGACAACGGAGACGCAGCCGCACTTCACCAAGCGGCCGGTCCGAGGGGACATGGCGGCAACCTCTGCAGCGTCAGT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000471496.5 |
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| CDS TCA 72 bp | ACGCCCTCTGGAAGGGGGACTGGAAGCCGAATCCCCTaGCAAGCGGTCGCGGTCCTGTCTTTCCGCTCGAGC | + |
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Preference number: 6 (lower is better) Translates to: TPSGRGTGSRIP*QAVAVLSFRSS Trigger: GCTCGAGCGGAAAGACAGGACCGCGACCGCTTGTCAGGGGATTCGGCTTCCAGTCCCCCTTCCAGAGGGCGT 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000468380.1 |
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| CDS TCA 72 bp | AGGTTGCCGCCATGTCCCCTCGGACCGGCCGCTTGGTaGAGTGCGGCTGCGTCTCCGTTGTCGTCCACATCA | + |
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Preference number: 6 (lower is better) Translates to: RLPPCPLGPAAW*SAAASPLSSTS Trigger: TGATGTGGACGACAACGGAGACGCAGCCGCACTTCACCAAGCGGCCGGTCCGAGGGGACATGGCGGCAACCT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000471496.5 |
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| CDS GCA 72 bp | ATGTCCCCTCGGACCGGCCGCTTGGTGAAGTGCGGCTaGGTCTCCGTTGTCGTCCACATCACCTCCGTTCGG | + |
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Preference number: 6 (lower is better) Translates to: MSPRTGRLVKCG*VSVVVHITSVR Trigger: CCGAACGGAGGTGATGTGGACGACAACGGAGACGCAGCCGCACTTCACCAAGCGGCCGGTCCGAGGGGACAT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000471496.5 |
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| CDS CAA 72 bp | ACGCACCGATCCACCGCGGCTTTATGCCTCGTCACCTaGGCAACAGCAGCGGGCTCAGGCAGTGTCGCCACC | + |
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Preference number: 6 (lower is better) Translates to: THRSTAALCLVT*ATAAGSGSVAT Trigger: GGTGGCGACACTGCCTGAGCCCGCTGCTGTTGCCAAGGTGACGAGGCATAAAGCCGCGGTGGATCGGTGCGT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000468380.1 |
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| CDS CAA 90 bp | ACCTTGGCAACAGCAGCGGGCTCAGGCAGTGTCGCCACCAGTTTCTaGCACCCGCCAGCAGCACTGACGCTGCAGAGGTTGCCGCCATGT | + |
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Preference number: 6 (lower is better) Translates to: TLATAAGSGSVATSF*HPPAALTLQRLPPC Trigger: ACATGGCGGCAACCTCTGCAGCGTCAGTGCTGCTGGCGGGTGCAAGAAACTGGTGGCGACACTGCCTGAGCCCGCTGCTGTTGCCAAGGT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000468380.1 |
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| CDS CAA 90 bp | CTCTTGGCAACAGCAGCGGGCTCAGGCAGTGTCGCCACCAGTTTCTaGCACCCGCCAGCAGCACTGACGCTGCAGAGGTTGCCGCCATGT | + |
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Preference number: 6 (lower is better) Translates to: LLATAAGSGSVATSF*HPPAALTLQRLPPC Trigger: ACATGGCGGCAACCTCTGCAGCGTCAGTGCTGCTGGCGGGTGCAAGAAACTGGTGGCGACACTGCCTGAGCCCGCTGCTGTTGCCAAGAG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000471496.5 |
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| CDS TCA 72 bp | CAGATAGTGCCACTGCACTCCAGCATGGTGATGAAGTaGGACTCTTGGCAACAGCAGCGGGCTCAGGCAGTG | + |
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Preference number: 6 (lower is better) Translates to: QIVPLHSSMVMK*DSWQQQRAQAV Trigger: CACTGCCTGAGCCCGCTGCTGTTGCCAAGAGTCTCACTTCATCACCATGCTGGAGTGCAGTGGCACTATCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000471496.5 |
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| CDS CAA 90 bp | TCAGATAGTGCCACTGCACTCCAGCATGGTGATGAAGTGAGACTCTaGGCAACAGCAGCGGGCTCAGGCAGTGTCGCCACCAGTTTCTTG | + |
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Preference number: 6 (lower is better) Translates to: SDSATALQHGDEVRL*ATAAGSGSVATSFL Trigger: CAAGAAACTGGTGGCGACACTGCCTGAGCCCGCTGCTGTTGCCAAGAGTCTCACTTCATCACCATGCTGGAGTGCAGTGGCACTATCTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000471496.5 |
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| CDS TCA 72 bp | CGAGAATCGCTTGAATCCGAGAGGCGGAGATTGCAGTaGTCTCAGATAGTGCCACTGCACTCCAGCATGGTG | + |
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Preference number: 6 (lower is better) Translates to: RESLESERRRLQ*SQIVPLHSSMV Trigger: CACCATGCTGGAGTGCAGTGGCACTATCTGAGATCACTGCAATCTCCGCCTCTCGGATTCAAGCGATTCTCG 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000468380.1 ENST00000471496.5 |
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| CDS CCA 72 bp | GGAAACGGGTCTGAACTGGGCAGGACCACTTACACGTaGCTTTTCTTCTCCTTCTGCCACCCTTTAGACAGC | + |
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Preference number: 6 (lower is better) Translates to: GNGSELGRTTYT*LFFSFCHPLDS Trigger: GCTGTCTAAAGGGTGGCAGAAGGAGAAGAAAAGCCACGTGTAAGTGGTCCTGCCCAGTTCAGACCCGTTTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000482098.1 |
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| CDS CCA 72 bp | AAATACAGTGGACCCTTGAAGGAAACGGGTCTGAACTaGGCAGGACCACTTACACGTGGCTTTTCTTCTCCT | + |
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Preference number: 6 (lower is better) Translates to: KYSGPLKETGLN*AGPLTRGFSSP Trigger: AGGAGAAGAAAAGCCACGTGTAAGTGGTCCTGCCCAGTTCAGACCCGTTTCCTTCAAGGGTCCACTGTATTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000482098.1 |
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| CDS CAA 90 bp | GTAACTAGATCCTGCCTCAGTTTACTAAGAAAATACAGTGGACCCTaGAAGGAAACGGGTCTGAACTGGGCAGGACCACTTACACGTGGC | + |
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Preference number: 6 (lower is better) Translates to: VTRSCLSLLRKYSGP*KETGLNWAGPLTRG Trigger: GCCACGTGTAAGTGGTCCTGCCCAGTTCAGACCCGTTTCCTTCAAGGGTCCACTGTATTTTCTTAGTAAACTGAGGCAGGATCTAGTTAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000482098.1 |
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| CDS CAA 72 bp | TCCTGCCTCAGTTTACTAAGAAAATACAGTGGACCCTaGAAGGAAACGGGTCTGAACTGGGCAGGACCACTT | + |
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Preference number: 6 (lower is better) Translates to: SCLSLLRKYSGP*KETGLNWAGPL Trigger: AAGTGGTCCTGCCCAGTTCAGACCCGTTTCCTTCAAGGGTCCACTGTATTTTCTTAGTAAACTGAGGCAGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000482098.1 |
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| CDS TCA 72 bp | TCTTTAATATTTATGGTCACAGCTGTCTTCCCAAGTTaGCCCCGACTGCCAGTTCAACAAGTCAGTAGCAGT | + |
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Preference number: 6 (lower is better) Translates to: SLIFMVTAVFPS*PRLPVQQVSSS Trigger: ACTGCTACTGACTTGTTGAACTGGCAGTCGGGGTCAACTTGGGAAGACAGCTGTGACCATAAATATTAAAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000468380.1 ENST00000471496.5 ENST00000482098.1 |
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| CDS CCA 72 bp | TTTTTCTGGGATTTAACTCTAGGACATGATTGCTGCTaGTATTTAGCAAAAGGCTCGGGTTCACACCTAGCG | + |
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Preference number: 6 (lower is better) Translates to: FFWDLTLGHDCC*YLAKGSGSHLA Trigger: CGCTAGGTGTGAACCCGAGCCTTTTGCTAAATACCAGCAGCAATCATGTCCTAGAGTTAAATCCCAGAAAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000471496.5 |
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| CDS TCA 72 bp | TCTTTAATATTTATGGTCACAGCTGTCTTCCCAAGTTaGCCCCGACTGCCAGTTCTGAACAACAACAAGTCA | + |
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Preference number: 6 (lower is better) Translates to: SLIFMVTAVFPS*PRLPVLNNNKS Trigger: TGACTTGTTGTTGTTCAGAACTGGCAGTCGGGGTCAACTTGGGAAGACAGCTGTGACCATAAATATTAAAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000487386.1 |
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| CDS GCA 72 bp | TCCCAAGAGCTCATGACTAATGACAGCGTAAATCTATaGTATCAAAACCTGCGTCTCTCATCTGTTACGAGT | + |
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Preference number: 6 (lower is better) Translates to: SQELMTNDSVNL*YQNLRLSSVTS Trigger: ACTCGTAACAGATGAGAGACGCAGGTTTTGATAGCATAGATTTACGCTGTCATTAGTCATGAGCTCTTGGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000468380.1 ENST00000471496.5 ENST00000482098.1 |
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| CDS GCA 72 bp | TGGCAATTTTTCTGGGATTTAACTCTAGGACATGATTaGTGCTGGTATTTAGCAAAAGGCTCGGGTTCACAC | + |
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Preference number: 6 (lower is better) Translates to: WQFFWDLTLGHD*CWYLAKGSGSH Trigger: GTGTGAACCCGAGCCTTTTGCTAAATACCAGCAGCAATCATGTCCTAGAGTTAAATCCCAGAAAAATTGCCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000471496.5 |
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| CDS GCA 72 bp | CAATTTTTCTGGGATTTAACTCTAGGACATGATTGCTaGTGGTATTTAGCAAAAGGCTCGGGTTCACACCTA | + |
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Preference number: 6 (lower is better) Translates to: QFFWDLTLGHDC*WYLAKGSGSHL Trigger: TAGGTGTGAACCCGAGCCTTTTGCTAAATACCAGCAGCAATCATGTCCTAGAGTTAAATCCCAGAAAAATTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000471496.5 |
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