Pregenerated sensors for LINC00886 (Homo sapiens)
Ensembl gene IDs: ENSG00000240875Ensembl transcript IDs: ENST00000472943.5, ENST00000473352.1, ENST00000488584.2, ENST00000654528.1, ENST00000664482.1
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GCTCGAACTAAAGTCGGTGGAGGGCGTCTGGAGCCGGGCGGAATCTaGGATGCCTCGCCGGATTACGCGGCGGGGTCGGCACGCGAGGCA | + |
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Preference number: 5 (lower is better) Translates to: ARTKVGGGRLEPGGI*DASPDYAAGSAREA Trigger: TGCCTCGCGTGCCGACCCCGCCGCGTAATCCGGCGAGGCATCCCAGATTCCGCCCGGCTCCAGACGCCCTCCACCGACTTTAGTTCGAGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000472943.5 ENST00000473352.1 ENST00000664482.1 |
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| CDS GCA 90 bp | TTTGGCCTGAGAGGTCATGTGATGGGCACTGAAATGGAACTCCCCTaGGCAAGGGCCTGTGGGATGCAGGCAGATGAAGCCTGCCCTTTG | + |
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Preference number: 5 (lower is better) Translates to: FGLRGHVMGTEMELP*ARACGMQADEACPL Trigger: CAAAGGGCAGGCTTCATCTGCCTGCATCCCACAGGCCCTTGCGCAGGGGAGTTCCATTTCAGTGCCCATCACATGACCTCTCAGGCCAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000472943.5 ENST00000488584.2 |
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| CDS TCA 90 bp | TCTCCCACCCTCTCTTTCAATGCCGAACCCCAGAGGCCACGGGAGTaGGTCTTCACAAGGCGCATTAGTACATCTTGGGTGGTGCCGAAA | + |
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Preference number: 5 (lower is better) Translates to: SPTLSFNAEPQRPRE*VFTRRISTSWVVPK Trigger: TTTCGGCACCACCCAAGATGTACTAATGCGCCTTGTGAAGACTCACTCCCGTGGCCTCTGGGGTTCGGCATTGAAAGAGAGGGTGGGAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654528.1 |
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| CDS GCA 90 bp | CGCATTAGTACATCTTGGGTGGTGCCGAAAAGCAGGGATTACAAATaGTGGAGACAGTTTGGCAGCGGATGTGCCTCAACCCAGCTCTGC | + |
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Preference number: 5 (lower is better) Translates to: RISTSWVVPKSRDYK*WRQFGSGCASTQLC Trigger: GCAGAGCTGGGTTGAGGCACATCCGCTGCCAAACTGTCTCCAGCATTTGTAATCCCTGCTTTTCGGCACCACCCAAGATGTACTAATGCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654528.1 |
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| CDS CCA 90 bp | TTGGGTGGTGCCGAAAAGCAGGGATTACAAATGCTGGAGACAGTTTaGCAGCGGATGTGCCTCAACCCAGCTCTGCGGATTCCACATTCT | + |
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Preference number: 5 (lower is better) Translates to: LGGAEKQGLQMLETV*QRMCLNPALRIPHS Trigger: AGAATGTGGAATCCGCAGAGCTGGGTTGAGGCACATCCGCTGCCAAACTGTCTCCAGCATTTGTAATCCCTGCTTTTCGGCACCACCCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654528.1 |
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| CDS GCA 90 bp | CACGGGAGTGAGTCTTCACAAGGCGCATTAGTACATCTTGGGTGGTaGCGAAAAGCAGGGATTACAAATGCTGGAGACAGTTTGGCAGCG | + |
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Preference number: 5 (lower is better) Translates to: HGSESSQGALVHLGW*RKAGITNAGDSLAA Trigger: CGCTGCCAAACTGTCTCCAGCATTTGTAATCCCTGCTTTTCGGCACCACCCAAGATGTACTAATGCGCCTTGTGAAGACTCACTCCCGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654528.1 |
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| CDS CCA 90 bp | ATTAGTACATCTTGGGTGGTGCCGAAAAGCAGGGATTACAAATGCTaGAGACAGTTTGGCAGCGGATGTGCCTCAACCCAGCTCTGCGGA | + |
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Preference number: 5 (lower is better) Translates to: ISTSWVVPKSRDYKC*RQFGSGCASTQLCG Trigger: TCCGCAGAGCTGGGTTGAGGCACATCCGCTGCCAAACTGTCTCCAGCATTTGTAATCCCTGCTTTTCGGCACCACCCAAGATGTACTAAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654528.1 |
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| CDS CCA 90 bp | GGCCACGGGAGTGAGTCTTCACAAGGCGCATTAGTACATCTTGGGTaGTGCCGAAAAGCAGGGATTACAAATGCTGGAGACAGTTTGGCA | + |
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Preference number: 5 (lower is better) Translates to: GHGSESSQGALVHLG*CRKAGITNAGDSLA Trigger: TGCCAAACTGTCTCCAGCATTTGTAATCCCTGCTTTTCGGCACCACCCAAGATGTACTAATGCGCCTTGTGAAGACTCACTCCCGTGGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654528.1 |
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| CDS CCA 90 bp | ATCACACAGGGACCACTCCATTCAGCAAATGAAGGTCTAGAACAGTaGTTACGAAATGCAGGTCAGCAGCCGGGCTACAAAGGAATCACC | + |
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Preference number: 5 (lower is better) Translates to: ITQGPLHSANEGLEQ*LRNAGQQPGYKGIT Trigger: GGTGATTCCTTTGTAGCCCGGCTGCTGACCTGCATTTCGTAACCACTGTTCTAGACCTTCATTTGCTGAATGGAGTGGTCCCTGTGTGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000472943.5 ENST00000488584.2 |
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| CDS TCA 90 bp | TTTGAATGCTGTATTAAGTCACACTATAGCAGCTGTTCTCAACCTTaGCTGCACTTGGGAGCTTTTAAAAATCCTGATGCCGGCCAGGGG | + |
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Preference number: 5 (lower is better) Translates to: FECCIKSHYSSCSQP*LHLGAFKNPDAGQG Trigger: CCCCTGGCCGGCATCAGGATTTTTAAAAGCTCCCAAGTGCAGTCAAGGTTGAGAACAGCTGCTATAGTGTGACTTAATACAGCATTCAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000472943.5 ENST00000488584.2 |
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| CDS TCA 90 bp | GGTGCCCAGAGTCAGACAATGTGTGTGCAAGAAAGCCTGGAAATATaGATGAGCCAAGTACATTCAGAGAACAGTGAGAATGTCTCTGTG | + |
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Preference number: 5 (lower is better) Translates to: GAQSQTMCVQESLEI*MSQVHSENSENVSV Trigger: CACAGAGACATTCTCACTGTTCTCTGAATGTACTTGGCTCATTCATATTTCCAGGCTTTCTTGCACACACATTGTCTGACTCTGGGCACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000472943.5 ENST00000488584.2 |
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| CDS CCA 90 bp | AAAGGCCTGATGGGTGAAGGGCTGATCACCCTTCCAAACAAAATTTaGGCTTTGTTAACTAGGAAGAAAAATGGGAGACTAGAAGAAACC | + |
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Preference number: 5 (lower is better) Translates to: KGLMGEGLITLPNKI*ALLTRKKNGRLEET Trigger: GGTTTCTTCTAGTCTCCCATTTTTCTTCCTAGTTAACAAAGCCCAAATTTTGTTTGGAAGGGTGATCAGCCCTTCACCCATCAGGCCTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000472943.5 ENST00000488584.2 |
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| CDS TCA 90 bp | CCACAGGGATCTTTGACTAGAAATATCTGCAAAGTGTTTGCTGAATaGGAACACATTTCATCACCCCACCCTCTTTTCCTAACTGAATGC | + |
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Preference number: 5 (lower is better) Translates to: PQGSLTRNICKVFAE*EHISSPHPLFLTEC Trigger: GCATTCAGTTAGGAAAAGAGGGTGGGGTGATGAAATGTGTTCTCATTCAGCAAACACTTTGCAGATATTTCTAGTCAAAGATCCCTGTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000472943.5 ENST00000488584.2 |
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| CDS GCA 72 bp | CGGTGGAGGGCGTCTGGAGCCGGGCGGAATCTGGGATaGCTCGCCGGATTACGCGGCGGGGTCGGCACGCGA | + |
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Preference number: 6 (lower is better) Translates to: RWRASGAGRNLG*LAGLRGGVGTR Trigger: TCGCGTGCCGACCCCGCCGCGTAATCCGGCGAGGCATCCCAGATTCCGCCCGGCTCCAGACGCCCTCCACCG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000472943.5 ENST00000473352.1 ENST00000664482.1 |
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| CDS CCA 72 bp | AAAGTCGGTGGAGGGCGTCTGGAGCCGGGCGGAATCTaGGATGCCTCGCCGGATTACGCGGCGGGGTCGGCA | + |
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Preference number: 6 (lower is better) Translates to: KVGGGRLEPGGI*DASPDYAAGSA Trigger: TGCCGACCCCGCCGCGTAATCCGGCGAGGCATCCCAGATTCCGCCCGGCTCCAGACGCCCTCCACCGACTTT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000472943.5 ENST00000473352.1 ENST00000664482.1 |
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| CDS TCA 72 bp | CCTGCCCTTTGTTCCCCTGCCTGCATTGGTGAAAGCTaGTCCCCGTGCAGCCGCTGTCACTGGGCAGAGGGC | + |
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Preference number: 6 (lower is better) Translates to: PALCSPACIGES*SPCSRCHWAEG Trigger: GCCCTCTGCCCAGTGACAGCGGCTGCACGGGGATCAGCTTTCACCAATGCAGGCAGGGGAACAAAGGGCAGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000472943.5 ENST00000488584.2 |
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| CDS TCA 72 bp | CCCAACATGGGGTCTAAAGGTGGGGTCAAGCTTCCCTaGGGCAAAGGCCTGATGGGTGAAGGGCTGATCACC | + |
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Preference number: 6 (lower is better) Translates to: PNMGSKGGVKLP*GKGLMGEGLIT Trigger: GGTGATCAGCCCTTCACCCATCAGGCCTTTGCCTCAGGGAAGCTTGACCCCACCTTTAGACCCCATGTTGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000472943.5 ENST00000488584.2 |
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| CDS GCA 72 bp | AGAGGTCATGTGATGGGCACTGAAATGGAACTCCCCTaGGCAAGGGCCTGTGGGATGCAGGCAGATGAAGCC | + |
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Preference number: 6 (lower is better) Translates to: RGHVMGTEMELP*ARACGMQADEA Trigger: GGCTTCATCTGCCTGCATCCCACAGGCCCTTGCGCAGGGGAGTTCCATTTCAGTGCCCATCACATGACCTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000472943.5 ENST00000488584.2 |
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| CDS TCA 72 bp | AAACCGTTTTGGCCTGAGAGGTCATGTGATGGGCACTaGAATGGAACTCCCCTGCGCAAGGGCCTGTGGGAT | + |
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Preference number: 6 (lower is better) Translates to: KPFWPERSCDGH*NGTPLRKGLWD Trigger: ATCCCACAGGCCCTTGCGCAGGGGAGTTCCATTTCAGTGCCCATCACATGACCTCTCAGGCCAAAACGGTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000472943.5 ENST00000488584.2 |
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| CDS CAA 90 bp | CTTGGGTGGTGCCGAAAAGCAGGGATTACAAATGCTGGAGACAGTTaGGCAGCGGATGTGCCTCAACCCAGCTCTGCGGATTCCACATTC | + |
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Preference number: 6 (lower is better) Translates to: LGWCRKAGITNAGDS*AADVPQPSSADSTF Trigger: GAATGTGGAATCCGCAGAGCTGGGTTGAGGCACATCCGCTGCCAAACTGTCTCCAGCATTTGTAATCCCTGCTTTTCGGCACCACCCAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654528.1 |
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| CDS TCA 72 bp | TGGGGTCAAGCTTCCCTGAGGCAAAGGCCTGATGGGTaGAGGGCTGATCACCCTTCCAAACAAAATTTGGGC | + |
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Preference number: 6 (lower is better) Translates to: WGQASLRQRPDG*RADHPSKQNLG Trigger: GCCCAAATTTTGTTTGGAAGGGTGATCAGCCCTTCACCCATCAGGCCTTTGCCTCAGGGAAGCTTGACCCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000472943.5 ENST00000488584.2 |
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| CDS TCA 72 bp | CTCTCTTTCAATGCCGAACCCCAGAGGCCACGGGAGTaGGTCTTCACAAGGCGCATTAGTACATCTTGGGTG | + |
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Preference number: 6 (lower is better) Translates to: LSFNAEPQRPRE*VFTRRISTSWV Trigger: CACCCAAGATGTACTAATGCGCCTTGTGAAGACTCACTCCCGTGGCCTCTGGGGTTCGGCATTGAAAGAGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654528.1 |
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| CDS CCA 72 bp | GCCGAAAAGCAGGGATTACAAATGCTGGAGACAGTTTaGCAGCGGATGTGCCTCAACCCAGCTCTGCGGATT | + |
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Preference number: 6 (lower is better) Translates to: AEKQGLQMLETV*QRMCLNPALRI Trigger: AATCCGCAGAGCTGGGTTGAGGCACATCCGCTGCCAAACTGTCTCCAGCATTTGTAATCCCTGCTTTTCGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654528.1 |
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| CDS CCA 72 bp | TCTTGGGTGGTGCCGAAAAGCAGGGATTACAAATGCTaGAGACAGTTTGGCAGCGGATGTGCCTCAACCCAG | + |
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Preference number: 6 (lower is better) Translates to: SWVVPKSRDYKC*RQFGSGCASTQ Trigger: CTGGGTTGAGGCACATCCGCTGCCAAACTGTCTCCAGCATTTGTAATCCCTGCTTTTCGGCACCACCCAAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654528.1 |
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| CDS CCA 72 bp | GGTGCTTTCCGTCCCTCTGCTGTGACCCCTCAGTGTTaGATTTCCTTGTGCATGACTCTCATGCGCATTCCT | + |
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Preference number: 6 (lower is better) Translates to: GAFRPSAVTPQC*ISLCMTLMRIP Trigger: AGGAATGCGCATGAGAGTCATGCACAAGGAAATCCAACACTGAGGGGTCACAGCAGAGGGACGGAAAGCACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000654528.1 ENST00000664482.1 |
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| CDS CAA 72 bp | AGGTGCTTTCCGTCCCTCTGCTGTGACCCCTCAGTGTaGGATTTCCTTGTGCTGCAGGTAGCAAGACAGAAG | + |
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Preference number: 6 (lower is better) Translates to: RCFPSLCCDPSV*DFLVLQVARQK Trigger: CTTCTGTCTTGCTACCTGCAGCACAAGGAAATCCAACACTGAGGGGTCACAGCAGAGGGACGGAAAGCACCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000472943.5 ENST00000488584.2 |
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| CDS CAA 72 bp | TGCCGAAAAGCAGGGATTACAAATGCTGGAGACAGTTaGGCAGCGGATGTGCCTCAACCCAGCTCTGCGGAT | + |
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Preference number: 6 (lower is better) Translates to: CRKAGITNAGDS*AADVPQPSSAD Trigger: ATCCGCAGAGCTGGGTTGAGGCACATCCGCTGCCAAACTGTCTCCAGCATTTGTAATCCCTGCTTTTCGGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654528.1 |
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| CDS CAA 72 bp | AGGTGCTTTCCGTCCCTCTGCTGTGACCCCTCAGTGTaGGATTTCCTTGTGCATGACTCTCATGCGCATTCC | + |
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Preference number: 6 (lower is better) Translates to: RCFPSLCCDPSV*DFLVHDSHAHS Trigger: GGAATGCGCATGAGAGTCATGCACAAGGAAATCCAACACTGAGGGGTCACAGCAGAGGGACGGAAAGCACCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000654528.1 ENST00000664482.1 |
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| CDS GCA 72 bp | ACATCTTGGGTGGTGCCGAAAAGCAGGGATTACAAATaGTGGAGACAGTTTGGCAGCGGATGTGCCTCAACC | + |
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Preference number: 6 (lower is better) Translates to: TSWVVPKSRDYK*WRQFGSGCAST Trigger: GGTTGAGGCACATCCGCTGCCAAACTGTCTCCAGCATTTGTAATCCCTGCTTTTCGGCACCACCCAAGATGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654528.1 |
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| CDS CAA 90 bp | GTAAGATCCAGGTGCTTTCCGTCCCTCTGCTGTGACCCCTCAGTGTaGGATTTCCTTGTGCTGCAGGTAGCAAGACAGAAGCAGAATGTC | + |
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Preference number: 6 (lower is better) Translates to: VRSRCFPSLCCDPSV*DFLVLQVARQKQNV Trigger: GACATTCTGCTTCTGTCTTGCTACCTGCAGCACAAGGAAATCCAACACTGAGGGGTCACAGCAGAGGGACGGAAAGCACCTGGATCTTAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000472943.5 ENST00000488584.2 |
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| CDS CAA 90 bp | TGGGGGCTCTCTTGCCATGTGAGCTCTGCATACAGCAGTTCCCCTTaGCCTTCCACCATGAGTAGAAGCAACCTGAAGTCCTCAACAGAA | + |
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Preference number: 6 (lower is better) Translates to: WGLSCHVSSAYSSSP*PSTMSRSNLKSSTE Trigger: TTCTGTTGAGGACTTCAGGTTGCTTCTACTCATGGTGGAAGGCAAAGGGGAACTGCTGTATGCAGAGCTCACATGGCAAGAGAGCCCCCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000473352.1 |
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| CDS CAA 72 bp | TCTTGCCATGTGAGCTCTGCATACAGCAGTTCCCCTTaGCCTTCCACCATGAGTAGAAGCAACCTGAAGTCC | + |
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Preference number: 6 (lower is better) Translates to: SCHVSSAYSSSP*PSTMSRSNLKS Trigger: GGACTTCAGGTTGCTTCTACTCATGGTGGAAGGCAAAGGGGAACTGCTGTATGCAGAGCTCACATGGCAAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000473352.1 |
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| CDS CAA 90 bp | GTAAGATCCAGGTGCTTTCCGTCCCTCTGCTGTGACCCCTCAGTGTaGGATTTCCTTGTGCATGACTCTCATGCGCATTCCTTTTTCTTG | + |
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Preference number: 6 (lower is better) Translates to: VRSRCFPSLCCDPSV*DFLVHDSHAHSFFL Trigger: CAAGAAAAAGGAATGCGCATGAGAGTCATGCACAAGGAAATCCAACACTGAGGGGTCACAGCAGAGGGACGGAAAGCACCTGGATCTTAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000654528.1 ENST00000664482.1 |
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| CDS GCA 72 bp | GAGACAAAAGAGCTCAACAATGTTGTAAGATCCAGGTaGTTTCCGTCCCTCTGCTGTGACCCCTCAGTGTTG | + |
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Preference number: 6 (lower is better) Translates to: ETKELNNVVRSR*FPSLCCDPSVL Trigger: CAACACTGAGGGGTCACAGCAGAGGGACGGAAAGCACCTGGATCTTACAACATTGTTGAGCTCTTTTGTCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000472943.5 ENST00000488584.2 ENST00000654528.1 ENST00000664482.1 |
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| CDS CCA 72 bp | GCCAAGTACATTCAGAGAACAGTGAGAATGTCTCTGTaGCTTATGTACAGGCTGAGATGGGGTGCTGGAAGG | + |
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Preference number: 6 (lower is better) Translates to: AKYIQRTVRMSL*LMYRLRWGAGR Trigger: CCTTCCAGCACCCCATCTCAGCCTGTACATAAGCCACAGAGACATTCTCACTGTTCTCTGAATGTACTTGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000472943.5 ENST00000488584.2 |
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| CDS CCA 72 bp | GGACCACTCCATTCAGCAAATGAAGGTCTAGAACAGTaGTTACGAAATGCAGGTCAGCAGCCGGGCTACAAA | + |
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Preference number: 6 (lower is better) Translates to: GPLHSANEGLEQ*LRNAGQQPGYK Trigger: TTTGTAGCCCGGCTGCTGACCTGCATTTCGTAACCACTGTTCTAGACCTTCATTTGCTGAATGGAGTGGTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000472943.5 ENST00000488584.2 |
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| CDS CAA 72 bp | CTAGGAGCAAGGAGTGACTTAGTAGTGAAGGTGGGCTaGACAGGAAAGGTTTCACGGAAGAGGAGAGGACAT | + |
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Preference number: 6 (lower is better) Translates to: LGARSDLVVKVG*TGKVSRKRRGH Trigger: ATGTCCTCTCCTCTTCCGTGAAACCTTTCCTGTCAAGCCCACCTTCACTACTAAGTCACTCCTTGCTCCTAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000472943.5 ENST00000488584.2 |
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| CDS TCA 72 bp | CTTCCTGGGAATGCTCGCCTGACTTTGGGCAGACATTaGTGTGGCCCTAATGACTATTTTGACTGTGTTCTG | + |
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Preference number: 6 (lower is better) Translates to: LPGNARLTLGRH*CGPNDYFDCVL Trigger: CAGAACACAGTCAAAATAGTCATTAGGGCCACATCAATGTCTGCCCAAAGTCAGGCGAGCATTCCCAGGAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000472943.5 ENST00000488584.2 |
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| CDS GCA 72 bp | GAGTCTTCACAAGGCGCATTAGTACATCTTGGGTGGTaGCGAAAAGCAGGGATTACAAATGCTGGAGACAGT | + |
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Preference number: 6 (lower is better) Translates to: ESSQGALVHLGW*RKAGITNAGDS Trigger: ACTGTCTCCAGCATTTGTAATCCCTGCTTTTCGGCACCACCCAAGATGTACTAATGCGCCTTGTGAAGACTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654528.1 |
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| CDS CCA 72 bp | AGTGAGTCTTCACAAGGCGCATTAGTACATCTTGGGTaGTGCCGAAAAGCAGGGATTACAAATGCTGGAGAC | + |
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Preference number: 6 (lower is better) Translates to: SESSQGALVHLG*CRKAGITNAGD Trigger: GTCTCCAGCATTTGTAATCCCTGCTTTTCGGCACCACCCAAGATGTACTAATGCGCCTTGTGAAGACTCACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654528.1 |
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| CDS CAA 72 bp | TTTTCCTTGGAAAGGCTCCAGATAAGAGACAGGCTATaGTTCCTCCACAGCAATTCACAGGCTTGCTTTTCA | + |
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Preference number: 6 (lower is better) Translates to: FSLERLQIRDRL*FLHSNSQACFS Trigger: TGAAAAGCAAGCCTGTGAATTGCTGTGGAGGAACAATAGCCTGTCTCTTATCTGGAGCCTTTCCAAGGAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000472943.5 ENST00000488584.2 |
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| CDS TCA 72 bp | TGTATTAAGTCACACTATAGCAGCTGTTCTCAACCTTaGCTGCACTTGGGAGCTTTTAAAAATCCTGATGCC | + |
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Preference number: 6 (lower is better) Translates to: CIKSHYSSCSQP*LHLGAFKNPDA Trigger: GGCATCAGGATTTTTAAAAGCTCCCAAGTGCAGTCAAGGTTGAGAACAGCTGCTATAGTGTGACTTAATACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000472943.5 ENST00000488584.2 |
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| CDS TCA 72 bp | ACAGACCTTCAAATTATTGACTCAGAATCTCCCAAGTaGTCCTGGTTTGAGAACTGGGTTCAATGTGGTGAA | + |
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Preference number: 6 (lower is better) Translates to: TDLQIIDSESPK*SWFENWVQCGE Trigger: TTCACCACATTGAACCCAGTTCTCAAACCAGGATCACTTGGGAGATTCTGAGTCAATAATTTGAAGGTCTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000472943.5 ENST00000488584.2 |
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| CDS GCA 72 bp | ATTCACTCAATAAGTATTCATAGAAACCAAGCCCTGTaGTTACTGCTGAAACTACAAAGGGTCCACATGCTA | + |
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Preference number: 6 (lower is better) Translates to: IHSISIHRNQAL*LLLKLQRVHML Trigger: TAGCATGTGGACCCTTTGTAGTTTCAGCAGTAAGCACAGGGCTTGGTTTCTATGAATACTTATTGAGTGAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000472943.5 ENST00000488584.2 |
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| CDS CCA 72 bp | ACTACAAAGGGTCCACATGCTATTAGGGAGGAGGAGTaGGCTAACCTATATACAGTTATCTTTAATGTAAAG | + |
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Preference number: 6 (lower is better) Translates to: TTKGPHAIREEE*ANLYTVIFNVK Trigger: CTTTACATTAAAGATAACTGTATATAGGTTAGCCCACTCCTCCTCCCTAATAGCATGTGGACCCTTTGTAGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000472943.5 ENST00000488584.2 |
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| CDS TCA 72 bp | TCTTTGACTAGAAATATCTGCAAAGTGTTTGCTGAATaGGAACACATTTCATCACCCCACCCTCTTTTCCTA | + |
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Preference number: 6 (lower is better) Translates to: SLTRNICKVFAE*EHISSPHPLFL Trigger: TAGGAAAAGAGGGTGGGGTGATGAAATGTGTTCTCATTCAGCAAACACTTTGCAGATATTTCTAGTCAAAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000472943.5 ENST00000488584.2 |
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| CDS CAA 72 bp | GCTTCACAATATGAATTTGAAATGCTTGCTCTTGTTTaGATCCCTGTACTCAGGTGCCGAAATGTTATAGTT | + |
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Preference number: 6 (lower is better) Translates to: ASQYEFEMLALV*IPVLRCRNVIV Trigger: AACTATAACATTTCGGCACCTGAGTACAGGGATCAAAACAAGAGCAAGCATTTCAAATTCATATTGTGAAGC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000472943.5 ENST00000488584.2 |
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| CDS CAA 90 bp | TTTGTAGGTGCTTCACAATATGAATTTGAAATGCTTGCTCTTGTTTaGATCCCTGTACTCAGGTGCCGAAATGTTATAGTTAGGAAAAGT | + |
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Preference number: 6 (lower is better) Translates to: FVGASQYEFEMLALV*IPVLRCRNVIVRKS Trigger: ACTTTTCCTAACTATAACATTTCGGCACCTGAGTACAGGGATCAAAACAAGAGCAAGCATTTCAAATTCATATTGTGAAGCACCTACAAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000472943.5 ENST00000488584.2 |
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