Pregenerated sensors for LINC00880 (Homo sapiens)
Ensembl gene IDs: ENSG00000243629Ensembl transcript IDs: ENST00000471357.1, ENST00000659739.1
Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TCAGGCAGCCCAGCGTGTGGGATGCCAGGCTGGATGTGCTGGGCCTaGCCAGCCGCCCGCTTTCCTCTTCTCTTGCCTCTGCCTGCCCCC | + |
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Preference number: 5 (lower is better) Translates to: SGSPACGMPGWMCWA*PAARFPLLLPLPAP Trigger: GGGGGCAGGCAGAGGCAAGAGAAGAGGAAAGCGGGCGGCTGGTCAGGCCCAGCACATCCAGCCTGGCATCCCACACGCTGGGCTGCCTGA 68% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS GCA 90 bp | CTGGGCCTGACCAGCCGCCCGCTTTCCTCTTCTCTTGCCTCTGCCTaGCCCCTGGTGGACAGCTGGGGTAAAGCATGGGAGTGCGCCTTT | + |
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Preference number: 5 (lower is better) Translates to: LGLTSRPLSSSLASA*PLVDSWGKAWECAF Trigger: AAAGGCGCACTCCCATGCTTTACCCCAGCTGTCCACCAGGGGGCAGGCAGAGGCAAGAGAAGAGGAAAGCGGGCGGCTGGTCAGGCCCAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS TCA 90 bp | AATCACAGAGGCCACAACAGGCAGGAGGAGCGGCCTGGCTTTGTCTaGGTCAGGCAGCCCAGCGTGTGGGATGCCAGGCTGGATGTGCTG | + |
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Preference number: 5 (lower is better) Translates to: NHRGHNRQEERPGFV*VRQPSVWDARLDVL Trigger: CAGCACATCCAGCCTGGCATCCCACACGCTGGGCTGCCTGACTCAGACAAAGCCAGGCCGCTCCTCCTGCCTGTTGTGGCCTCTGTGATT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS TCA 90 bp | GCGAACTCAGAGATAACAGAGTGGTCCAGGGAAGCCCCAGTGGACTaGGTCATGGCCAGGCTCTCACAGCCCTCTTCTCGAGTCAGCATC | + |
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Preference number: 5 (lower is better) Translates to: ANSEITEWSREAPVD*VMARLSQPSSRVSI Trigger: GATGCTGACTCGAGAAGAGGGCTGTGAGAGCCTGGCCATGACTCAGTCCACTGGGGCTTCCCTGGACCACTCTGTTATCTCTGAGTTCGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659739.1 |
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| CDS CCA 90 bp | AACCATATAAAATCACAGAGGCCACAACAGGCAGGAGGAGCGGCCTaGCTTTGTCTGAGTCAGGCAGCCCAGCGTGTGGGATGCCAGGCT | + |
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Preference number: 5 (lower is better) Translates to: NHIKSQRPQQAGGAA*LCLSQAAQRVGCQA Trigger: AGCCTGGCATCCCACACGCTGGGCTGCCTGACTCAGACAAAGCCAGGCCGCTCCTCCTGCCTGTTGTGGCCTCTGTGATTTTATATGGTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS CCA 90 bp | TTATTCATCAGAAACCAGCTAGAAGCCAGGCCCTGTGCTGGGCGCTaGAGACATGGAAGAAACTGGGCTGAGGCTCCCGCCTTGAAGAGC | + |
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Preference number: 5 (lower is better) Translates to: LFIRNQLEARPCAGR*RHGRNWAEAPALKS Trigger: GCTCTTCAAGGCGGGAGCCTCAGCCCAGTTTCTTCCATGTCTCCAGCGCCCAGCACAGGGCCTGGCTTCTAGCTGGTTTCTGATGAATAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS GCA 90 bp | CTGAAGGCCTTGGGCAATTGTGCCAGCCAGAATCACAGAAGTGGCTaGGAACTCAGAGATAACAGAGTGGTCCAGGGAAGCCCCAGTGGA | + |
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Preference number: 5 (lower is better) Translates to: LKALGNCASQNHRSG*ELRDNRVVQGSPSG Trigger: TCCACTGGGGCTTCCCTGGACCACTCTGTTATCTCTGAGTTCGCAGCCACTTCTGTGATTCTGGCTGGCACAATTGCCCAAGGCCTTCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659739.1 |
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| CDS TCA 90 bp | GTACCAGCCTGTGTGGATGTTGCTAAGAGGAGGCAGACAGCACCATaGGCTCCCTTAGATGACGATCGGCATGATGTTCCTGCTGTGGCA | + |
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Preference number: 5 (lower is better) Translates to: VPACVDVAKRRQTAP*APLDDDRHDVPAVA Trigger: TGCCACAGCAGGAACATCATGCCGATCGTCATCTAAGGGAGCTCATGGTGCTGTCTGCCTCCTCTTAGCAACATCCACACAGGCTGGTAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS GCA 90 bp | CTGCACAGTCCCATGCACTGGCGAGCTTCCTGGGGACAAGGGCAGTaGCTTGATCACCTCTCTTCCTCGTGCAGTAAATGTTTGTTGGAT | + |
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Preference number: 5 (lower is better) Translates to: LHSPMHWRASWGQGQ*LDHLSSSCSKCLLD Trigger: ATCCAACAAACATTTACTGCACGAGGAAGAGAGGTGATCAAGGCACTGCCCTTGTCCCCAGGAAGCTCGCCAGTGCATGGGACTGTGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS GCA 90 bp | AGCCTTGTTCTCCGGCAAAGTCAATTTCCTGGAGAATCGAGGCTCTaGCTCAGATGTTCGGAGCCTCCGCAGGATGAACACCTCCATTTC | + |
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Preference number: 5 (lower is better) Translates to: SLVLRQSQFPGESRL*LRCSEPPQDEHLHF Trigger: GAAATGGAGGTGTTCATCCTGCGGAGGCTCCGAACATCTGAGGCAGAGCCTCGATTCTCCAGGAAATTGACTTTGCCGGAGAACAAGGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS CCA 90 bp | CAGGCTGTCCTGACACCACACACCTCTAGAATACCCTGGCTGTGCTaGGAGCTATTGGTGTCAGCTGAGTATTTTCATCCCTGTCCAAGT | + |
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Preference number: 5 (lower is better) Translates to: QAVLTPHTSRIPWLC*ELLVSAEYFHPCPS Trigger: ACTTGGACAGGGATGAAAATACTCAGCTGACACCAATAGCTCCCAGCACAGCCAGGGTATTCTAGAGGTGTGTGGTGTCAGGACAGCCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS GCA 90 bp | GCTTCCTGGGGACAAGGGCAGTGCCTTGATCACCTCTCTTCCTCGTaGAGTAAATGTTTGTTGGATGAATGGTTGTCAACTCTAGTCCTG | + |
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Preference number: 5 (lower is better) Translates to: ASWGQGQCLDHLSSS*SKCLLDEWLSTLVL Trigger: CAGGACTAGAGTTGACAACCATTCATCCAACAAACATTTACTGCACGAGGAAGAGAGGTGATCAAGGCACTGCCCTTGTCCCCAGGAAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS TCA 90 bp | TGGTGTCAGCTGAGTATTTTCATCCCTGTCCAAGTCACAATGATCTaGCTGTACCAGCCTGTGTGGATGTTGCTAAGAGGAGGCAGACAG | + |
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Preference number: 5 (lower is better) Translates to: WCQLSIFIPVQVTMI*LYQPVWMLLRGGRQ Trigger: CTGTCTGCCTCCTCTTAGCAACATCCACACAGGCTGGTACAGTCAGATCATTGTGACTTGGACAGGGATGAAAATACTCAGCTGACACCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS GCA 90 bp | GAAGAGCTTGTGGCCCAGGGAAGGGACAGTTCATCTGTCATTGATTaGCACGTGACAGTGTCTATGATGCTAAAAAGATGCCAGTGCTGT | + |
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Preference number: 5 (lower is better) Translates to: EELVAQGRDSSSVID*HVTVSMMLKRCQCC Trigger: ACAGCACTGGCATCTTTTTAGCATCATAGACACTGTCACGTGGCAATCAATGACAGATGAACTGTCCCTTCCCTGGGCCACAAGCTCTTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS TCA 90 bp | TTCACTCCAGGCTGTATACTTTGGTTACCATGGTCGCGTGGTGTCTaGTGTCACAGGCCAAACCATATAAAATCACAGAGGCCACAACAG | + |
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Preference number: 5 (lower is better) Translates to: FTPGCILWLPWSRGV*CHRPNHIKSQRPQQ Trigger: CTGTTGTGGCCTCTGTGATTTTATATGGTTTGGCCTGTGACATCAGACACCACGCGACCATGGTAACCAAAGTATACAGCCTGGAGTGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS CCA 90 bp | CTTGATCACCTCTCTTCCTCGTGCAGTAAATGTTTGTTGGATGAATaGTTGTCAACTCTAGTCCTGTCAGTCCTCCCTGAGCCCCACATT | + |
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Preference number: 5 (lower is better) Translates to: LDHLSSSCSKCLLDE*LSTLVLSVLPEPHI Trigger: AATGTGGGGCTCAGGGAGGACTGACAGGACTAGAGTTGACAACCATTCATCCAACAAACATTTACTGCACGAGGAAGAGAGGTGATCAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000471357.1 |
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| CDS CCA 90 bp | CCCACGAGGTACACCTTTCCCGGGAAACAAAAATCATTCCTTCTTTaGGTCCTGCAAGCTGTAAAGAACCAATACAGCACTGTGCTACTG | + |
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Preference number: 5 (lower is better) Translates to: PTRYTFPGKQKSFLL*VLQAVKNQYSTVLL Trigger: CAGTAGCACAGTGCTGTATTGGTTCTTTACAGCTTGCAGGACCCAAAGAAGGAATGATTTTTGTTTCCCGGGAAAGGTGTACCTCGTGGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS CCA 90 bp | CTTGATCACCTCTCTTCCTCGTGCAGTAAATGTTTGTTGGATGAATaGTTGTCAACTCTAGTCCTGTCAGTCCTCCCTGAGCCAGTTCAG | + |
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Preference number: 5 (lower is better) Translates to: LDHLSSSCSKCLLDE*LSTLVLSVLPEPVQ Trigger: CTGAACTGGCTCAGGGAGGACTGACAGGACTAGAGTTGACAACCATTCATCCAACAAACATTTACTGCACGAGGAAGAGAGGTGATCAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659739.1 |
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| CDS CCA 90 bp | ATTAACATTCACTCCAGGCTGTATACTTTGGTTACCATGGTCGCGTaGTGTCTGATGTCACAGGCCAAACCATATAAAATCACAGAGGCC | + |
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Preference number: 5 (lower is better) Translates to: INIHSRLYTLVTMVA*CLMSQAKPYKITEA Trigger: GGCCTCTGTGATTTTATATGGTTTGGCCTGTGACATCAGACACCACGCGACCATGGTAACCAAAGTATACAGCCTGGAGTGAATGTTAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS TCA 72 bp | GGCCACAACAGGCAGGAGGAGCGGCCTGGCTTTGTCTaGGTCAGGCAGCCCAGCGTGTGGGATGCCAGGCTG | + |
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Preference number: 6 (lower is better) Translates to: GHNRQEERPGFV*VRQPSVWDARL Trigger: CAGCCTGGCATCCCACACGCTGGGCTGCCTGACTCAGACAAAGCCAGGCCGCTCCTCCTGCCTGTTGTGGCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS CCA 72 bp | AAATCACAGAGGCCACAACAGGCAGGAGGAGCGGCCTaGCTTTGTCTGAGTCAGGCAGCCCAGCGTGTGGGA | + |
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Preference number: 6 (lower is better) Translates to: KSQRPQQAGGAA*LCLSQAAQRVG Trigger: TCCCACACGCTGGGCTGCCTGACTCAGACAAAGCCAGGCCGCTCCTCCTGCCTGTTGTGGCCTCTGTGATTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS CCA 72 bp | CAGAGTGGTCCAGGGAAGCCCCAGTGGACTGAGTCATaGCCAGGCTCTCACAGCCCTCTTCTCGAGTCAGCA | + |
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Preference number: 6 (lower is better) Translates to: QSGPGKPQWTES*PGSHSPLLESA Trigger: TGCTGACTCGAGAAGAGGGCTGTGAGAGCCTGGCCATGACTCAGTCCACTGGGGCTTCCCTGGACCACTCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659739.1 |
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| CDS CAA 72 bp | GGCTTTGATCAACCTGTGCCTCCCTTGATCCCCAACTaGTGGGCACCTTCCCTTGAGCAGTGCCCCCACGAG | + |
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Preference number: 6 (lower is better) Translates to: GFDQPVPPLIPN*WAPSLEQCPHE Trigger: CTCGTGGGGGCACTGCTCAAGGGAAGGTGCCCACAAGTTGGGGATCAAGGGAGGCACAGGTTGATCAAAGCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS CAA 90 bp | TATAAAATCACAGAGGCCACAACAGGCAGGAGGAGCGGCCTGGCTTaGTCTGAGTCAGGCAGCCCAGCGTGTGGGATGCCAGGCTGGATG | + |
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Preference number: 6 (lower is better) Translates to: YKITEATTGRRSGLA*SESGSPACGMPGWM Trigger: CATCCAGCCTGGCATCCCACACGCTGGGCTGCCTGACTCAGACAAAGCCAGGCCGCTCCTCCTGCCTGTTGTGGCCTCTGTGATTTTATA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS TCA 72 bp | GGAGACATGGAAGAAACTGGGCTGAGGCTCCCGCCTTaGAGAGCTTGTGGCCCAGGGAAGGGACAGTTCATC | + |
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Preference number: 6 (lower is better) Translates to: GDMEETGLRLPP*RACGPGKGQFI Trigger: GATGAACTGTCCCTTCCCTGGGCCACAAGCTCTTCAAGGCGGGAGCCTCAGCCCAGTTTCTTCCATGTCTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS TCA 72 bp | TCACAGCCCTCTTCTCGAGTCAGCATCGACTCCCTGTaGTCTCCCTGGAGCCTCAGACTCTCAGAAGAGCAG | + |
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Preference number: 6 (lower is better) Translates to: SQPSSRVSIDSL*SPWSLRLSEEQ Trigger: CTGCTCTTCTGAGAGTCTGAGGCTCCAGGGAGATCACAGGGAGTCGATGCTGACTCGAGAAGAGGGCTGTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659739.1 |
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| CDS GCA 72 bp | CGTGGAGGAAGAGGCTTTGGCTTTGTTGCGAGTCCTTaGCAGAGCCAGGCAAAGCCAGTCACCGCTTTGTTC | + |
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Preference number: 6 (lower is better) Translates to: RGGRGFGFVASP*QSQAKPVTALF Trigger: GAACAAAGCGGTGACTGGCTTTGCCTGGCTCTGGCAAGGACTCGCAACAAAGCCAAAGCCTCTTCCTCCACG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS CCA 72 bp | TTTGATCAACCTGTGCCTCCCTTGATCCCCAACTTGTaGGCACCTTCCCTTGAGCAGTGCCCCCACGAGGTA | + |
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Preference number: 6 (lower is better) Translates to: FDQPVPPLIPNL*APSLEQCPHEV Trigger: TACCTCGTGGGGGCACTGCTCAAGGGAAGGTGCCCACAAGTTGGGGATCAAGGGAGGCACAGGTTGATCAAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS CAA 72 bp | GGAAGAAACTGGGCTGAGGCTCCCGCCTTGAAGAGCTaGTGGCCCAGGGAAGGGACAGTTCATCTGTCATTG | + |
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Preference number: 6 (lower is better) Translates to: GRNWAEAPALKS*WPREGTVHLSL Trigger: CAATGACAGATGAACTGTCCCTTCCCTGGGCCACAAGCTCTTCAAGGCGGGAGCCTCAGCCCAGTTTCTTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS CAA 72 bp | TGGAGACATGGAAGAAACTGGGCTGAGGCTCCCGCCTaGAAGAGCTTGTGGCCCAGGGAAGGGACAGTTCAT | + |
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Preference number: 6 (lower is better) Translates to: WRHGRNWAEAPA*KSLWPREGTVH Trigger: ATGAACTGTCCCTTCCCTGGGCCACAAGCTCTTCAAGGCGGGAGCCTCAGCCCAGTTTCTTCCATGTCTCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS CAA 90 bp | TGGAGACATGGAAGAAACTGGGCTGAGGCTCCCGCCTTGAAGAGCTaGTGGCCCAGGGAAGGGACAGTTCATCTGTCATTGATTGCCACG | + |
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Preference number: 6 (lower is better) Translates to: WRHGRNWAEAPALKS*WPREGTVHLSLIAT Trigger: CGTGGCAATCAATGACAGATGAACTGTCCCTTCCCTGGGCCACAAGCTCTTCAAGGCGGGAGCCTCAGCCCAGTTTCTTCCATGTCTCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS GCA 72 bp | TTGATCCCCAACTTGTGGGCACCTTCCCTTGAGCAGTaGCCCCACGAGGTACACCTTTCCCGGGAAACAAAA | + |
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Preference number: 6 (lower is better) Translates to: LIPNLWAPSLEQ*PHEVHLSRETK Trigger: TTTTGTTTCCCGGGAAAGGTGTACCTCGTGGGGGCACTGCTCAAGGGAAGGTGCCCACAAGTTGGGGATCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS GCA 72 bp | CTCCGGCAAAGTCAATTTCCTGGAGAATCGAGGCTCTaGCTCAGATGTTCGGAGCCTCCGCAGGATGAACAC | + |
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Preference number: 6 (lower is better) Translates to: LRQSQFPGESRL*LRCSEPPQDEH Trigger: GTGTTCATCCTGCGGAGGCTCCGAACATCTGAGGCAGAGCCTCGATTCTCCAGGAAATTGACTTTGCCGGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS CCA 72 bp | CTTCCCCAGCCTTGTTCTCCGGCAAAGTCAATTTCCTaGAGAATCGAGGCTCTGCCTCAGATGTTCGGAGCC | + |
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Preference number: 6 (lower is better) Translates to: LPQPCSPAKSIS*RIEALPQMFGA Trigger: GGCTCCGAACATCTGAGGCAGAGCCTCGATTCTCCAGGAAATTGACTTTGCCGGAGAACAAGGCTGGGGAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS CAA 72 bp | GATGATGCCCTGGACACTGCATCCTCACTGAAGGCCTaGGGCAATTGTGCCAGCCAGAATCACAGAAGTGGC | + |
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Preference number: 6 (lower is better) Translates to: DDALDTASSLKA*GNCASQNHRSG Trigger: GCCACTTCTGTGATTCTGGCTGGCACAATTGCCCAAGGCCTTCAGTGAGGATGCAGTGTCCAGGGCATCATC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659739.1 |
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| CDS TCA 72 bp | TCAATTCCAGGGGCTTTGATCAACCTGTGCCTCCCTTaGTCCCCAACTTGTGGGCACCTTCCCTTGAGCAGT | + |
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Preference number: 6 (lower is better) Translates to: SIPGALINLCLP*SPTCGHLPLSS Trigger: ACTGCTCAAGGGAAGGTGCCCACAAGTTGGGGATCAAGGGAGGCACAGGTTGATCAAAGCCCCTGGAATTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS CCA 72 bp | AGAAACTGGGCTGAGGCTCCCGCCTTGAAGAGCTTGTaGCCCAGGGAAGGGACAGTTCATCTGTCATTGATT | + |
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Preference number: 6 (lower is better) Translates to: RNWAEAPALKSL*PREGTVHLSLI Trigger: AATCAATGACAGATGAACTGTCCCTTCCCTGGGCCACAAGCTCTTCAAGGCGGGAGCCTCAGCCCAGTTTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS CAA 72 bp | TGCACTGGCGAGCTTCCTGGGGACAAGGGCAGTGCCTaGATCACCTCTCTTCCTCGTGCAGTAAATGTTTGT | + |
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Preference number: 6 (lower is better) Translates to: CTGELPGDKGSA*ITSLPRAVNVC Trigger: ACAAACATTTACTGCACGAGGAAGAGAGGTGATCAAGGCACTGCCCTTGTCCCCAGGAAGCTCGCCAGTGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS CAA 90 bp | CCATTCATAGATGATGCCCTGGACACTGCATCCTCACTGAAGGCCTaGGGCAATTGTGCCAGCCAGAATCACAGAAGTGGCTGCGAACTC | + |
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Preference number: 6 (lower is better) Translates to: PFIDDALDTASSLKA*GNCASQNHRSGCEL Trigger: GAGTTCGCAGCCACTTCTGTGATTCTGGCTGGCACAATTGCCCAAGGCCTTCAGTGAGGATGCAGTGTCCAGGGCATCATCTATGAATGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659739.1 |
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| CDS GCA 72 bp | TTGGGCAATTGTGCCAGCCAGAATCACAGAAGTGGCTaGGAACTCAGAGATAACAGAGTGGTCCAGGGAAGC | + |
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Preference number: 6 (lower is better) Translates to: LGNCASQNHRSG*ELRDNRVVQGS Trigger: GCTTCCCTGGACCACTCTGTTATCTCTGAGTTCGCAGCCACTTCTGTGATTCTGGCTGGCACAATTGCCCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659739.1 |
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| CDS CAA 90 bp | ACAGTCCCATGCACTGGCGAGCTTCCTGGGGACAAGGGCAGTGCCTaGATCACCTCTCTTCCTCGTGCAGTAAATGTTTGTTGGATGAAT | + |
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Preference number: 6 (lower is better) Translates to: TVPCTGELPGDKGSA*ITSLPRAVNVCWMN Trigger: ATTCATCCAACAAACATTTACTGCACGAGGAAGAGAGGTGATCAAGGCACTGCCCTTGTCCCCAGGAAGCTCGCCAGTGCATGGGACTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS TCA 72 bp | TGTGTGGATGTTGCTAAGAGGAGGCAGACAGCACCATaGGCTCCCTTAGATGACGATCGGCATGATGTTCCT | + |
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Preference number: 6 (lower is better) Translates to: CVDVAKRRQTAP*APLDDDRHDVP Trigger: AGGAACATCATGCCGATCGTCATCTAAGGGAGCTCATGGTGCTGTCTGCCTCCTCTTAGCAACATCCACACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS GCA 72 bp | GACAGTGTCTATGATGCTAAAAAGATGCCAGTGCTGTaGTGCAGGAGCAAAGGCCGTGGAGGAAGAGGCTTT | + |
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Preference number: 6 (lower is better) Translates to: DSVYDAKKMPVL*CRSKGRGGRGF Trigger: AAAGCCTCTTCCTCCACGGCCTTTGCTCCTGCAGCACAGCACTGGCATCTTTTTAGCATCATAGACACTGTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS CCA 72 bp | CTGGGCAACAGAGCAGTACGCCATAGTTCAGAAGGCTaGAAAGTTCAAGGTCATGGTGCTGGTAGGTTTGGT | + |
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Preference number: 6 (lower is better) Translates to: LGNRAVRHSSEG*KVQGHGAGRFG Trigger: ACCAAACCTACCAGCACCATGACCTTGAACTTTCCAGCCTTCTGAACTATGGCGTACTGCTCTGTTGCCCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000471357.1 |
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| CDS CCA 72 bp | CTGACACCACACACCTCTAGAATACCCTGGCTGTGCTaGGAGCTATTGGTGTCAGCTGAGTATTTTCATCCC | + |
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Preference number: 6 (lower is better) Translates to: LTPHTSRIPWLC*ELLVSAEYFHP Trigger: GGGATGAAAATACTCAGCTGACACCAATAGCTCCCAGCACAGCCAGGGTATTCTAGAGGTGTGTGGTGTCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS CAA 90 bp | GGGCAGTGCCTTGATCACCTCTCTTCCTCGTGCAGTAAATGTTTGTaGGATGAATGGTTGTCAACTCTAGTCCTGTCAGTCCTCCCTGAG | + |
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Preference number: 6 (lower is better) Translates to: GQCLDHLSSSCSKCL*DEWLSTLVLSVLPE Trigger: CTCAGGGAGGACTGACAGGACTAGAGTTGACAACCATTCATCCAACAAACATTTACTGCACGAGGAAGAGAGGTGATCAAGGCACTGCCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS TCA 72 bp | GTTTGGTGTCCGGTAAAGGTTGTCTCCATTCATAGATaGTGCCCTGGACACTGCATCCTCACTGAAGGCCTT | + |
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Preference number: 6 (lower is better) Translates to: VWCPVKVVSIHR*CPGHCILTEGL Trigger: AAGGCCTTCAGTGAGGATGCAGTGTCCAGGGCATCATCTATGAATGGAGACAACCTTTACCGGACACCAAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659739.1 |
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| CDS GCA 72 bp | GTCCTGACACCACACACCTCTAGAATACCCTGGCTGTaGTGGGAGCTATTGGTGTCAGCTGAGTATTTTCAT | + |
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Preference number: 6 (lower is better) Translates to: VLTPHTSRIPWL*WELLVSAEYFH Trigger: ATGAAAATACTCAGCTGACACCAATAGCTCCCAGCACAGCCAGGGTATTCTAGAGGTGTGTGGTGTCAGGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS CCA 72 bp | ACACCTCTAGAATACCCTGGCTGTGCTGGGAGCTATTaGTGTCAGCTGAGTATTTTCATCCCTGTCCAAGTC | + |
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Preference number: 6 (lower is better) Translates to: TPLEYPGCAGSY*CQLSIFIPVQV Trigger: GACTTGGACAGGGATGAAAATACTCAGCTGACACCAATAGCTCCCAGCACAGCCAGGGTATTCTAGAGGTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS CAA 72 bp | CACACCTCTAGAATACCCTGGCTGTGCTGGGAGCTATaGGTGTCAGCTGAGTATTTTCATCCCTGTCCAAGT | + |
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Preference number: 6 (lower is better) Translates to: HTSRIPWLCWEL*VSAEYFHPCPS Trigger: ACTTGGACAGGGATGAAAATACTCAGCTGACACCAATAGCTCCCAGCACAGCCAGGGTATTCTAGAGGTGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS CAA 90 bp | CAAGGGCAGTGCCTTGATCACCTCTCTTCCTCGTGCAGTAAATGTTaGTTGGATGAATGGTTGTCAACTCTAGTCCTGTCAGTCCTCCCT | + |
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Preference number: 6 (lower is better) Translates to: QGQCLDHLSSSCSKC*LDEWLSTLVLSVLP Trigger: AGGGAGGACTGACAGGACTAGAGTTGACAACCATTCATCCAACAAACATTTACTGCACGAGGAAGAGAGGTGATCAAGGCACTGCCCTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS CAA 90 bp | CTGACACCACACACCTCTAGAATACCCTGGCTGTGCTGGGAGCTATaGGTGTCAGCTGAGTATTTTCATCCCTGTCCAAGTCACAATGAT | + |
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Preference number: 6 (lower is better) Translates to: LTPHTSRIPWLCWEL*VSAEYFHPCPSHND Trigger: ATCATTGTGACTTGGACAGGGATGAAAATACTCAGCTGACACCAATAGCTCCCAGCACAGCCAGGGTATTCTAGAGGTGTGTGGTGTCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS CAA 90 bp | GATCACCTCTCTTCCTCGTGCAGTAAATGTTTGTTGGATGAATGGTaGTCAACTCTAGTCCTGTCAGTCCTCCCTGAGCCCCACATTCAT | + |
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Preference number: 6 (lower is better) Translates to: DHLSSSCSKCLLDEW*STLVLSVLPEPHIH Trigger: ATGAATGTGGGGCTCAGGGAGGACTGACAGGACTAGAGTTGACAACCATTCATCCAACAAACATTTACTGCACGAGGAAGAGAGGTGATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000471357.1 |
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| CDS CAA 90 bp | CCCCACGAGGTACACCTTTCCCGGGAAACAAAAATCATTCCTTCTTaGGGTCCTGCAAGCTGTAAAGAACCAATACAGCACTGTGCTACT | + |
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Preference number: 6 (lower is better) Translates to: PHEVHLSRETKIIPS*GPASCKEPIQHCAT Trigger: AGTAGCACAGTGCTGTATTGGTTCTTTACAGCTTGCAGGACCCAAAGAAGGAATGATTTTTGTTTCCCGGGAAAGGTGTACCTCGTGGGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS CAA 90 bp | GATCACCTCTCTTCCTCGTGCAGTAAATGTTTGTTGGATGAATGGTaGTCAACTCTAGTCCTGTCAGTCCTCCCTGAGCCAGTTCAGAAG | + |
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Preference number: 6 (lower is better) Translates to: DHLSSSCSKCLLDEW*STLVLSVLPEPVQK Trigger: CTTCTGAACTGGCTCAGGGAGGACTGACAGGACTAGAGTTGACAACCATTCATCCAACAAACATTTACTGCACGAGGAAGAGAGGTGATC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659739.1 |
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| CDS TCA 72 bp | GGCTGTATACTTTGGTTACCATGGTCGCGTGGTGTCTaGTGTCACAGGCCAAACCATATAAAATCACAGAGG | + |
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Preference number: 6 (lower is better) Translates to: GCILWLPWSRGV*CHRPNHIKSQR Trigger: CCTCTGTGATTTTATATGGTTTGGCCTGTGACATCAGACACCACGCGACCATGGTAACCAAAGTATACAGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS GCA 72 bp | GGACAAGGGCAGTGCCTTGATCACCTCTCTTCCTCGTaGAGTAAATGTTTGTTGGATGAATGGTTGTCAACT | + |
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Preference number: 6 (lower is better) Translates to: GQGQCLDHLSSS*SKCLLDEWLST Trigger: AGTTGACAACCATTCATCCAACAAACATTTACTGCACGAGGAAGAGAGGTGATCAAGGCACTGCCCTTGTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS CCA 72 bp | CACTCCAGGCTGTATACTTTGGTTACCATGGTCGCGTaGTGTCTGATGTCACAGGCCAAACCATATAAAATC | + |
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Preference number: 6 (lower is better) Translates to: HSRLYTLVTMVA*CLMSQAKPYKI Trigger: GATTTTATATGGTTTGGCCTGTGACATCAGACACCACGCGACCATGGTAACCAAAGTATACAGCCTGGAGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS TCA 72 bp | TGCCGTGAGGACCCAATACAAGGTAGACTTCTGGGTTaGATTTTGTCCTCCAGAATTCATATGTTGAGGTCT | + |
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Preference number: 6 (lower is better) Translates to: CREDPIQGRLLG*ILSSRIHMLRS Trigger: AGACCTCAACATATGAATTCTGGAGGACAAAATTCAACCCAGAAGTCTACCTTGTATTGGGTCCTCACGGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000471357.1 |
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| CDS CAA 72 bp | CTTGATCACCTCTCTTCCTCGTGCAGTAAATGTTTGTaGGATGAATGGTTGTCAACTCTAGTCCTGTCAGTC | + |
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Preference number: 6 (lower is better) Translates to: LDHLSSSCSKCL*DEWLSTLVLSV Trigger: GACTGACAGGACTAGAGTTGACAACCATTCATCCAACAAACATTTACTGCACGAGGAAGAGAGGTGATCAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS CAA 72 bp | TGCCTTGATCACCTCTCTTCCTCGTGCAGTAAATGTTaGTTGGATGAATGGTTGTCAACTCTAGTCCTGTCA | + |
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Preference number: 6 (lower is better) Translates to: CLDHLSSSCSKC*LDEWLSTLVLS Trigger: TGACAGGACTAGAGTTGACAACCATTCATCCAACAAACATTTACTGCACGAGGAAGAGAGGTGATCAAGGCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS CAA 72 bp | GTACACCTTTCCCGGGAAACAAAAATCATTCCTTCTTaGGGTCCTGCAAGCTGTAAAGAACCAATACAGCAC | + |
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Preference number: 6 (lower is better) Translates to: VHLSRETKIIPS*GPASCKEPIQH Trigger: GTGCTGTATTGGTTCTTTACAGCTTGCAGGACCCAAAGAAGGAATGATTTTTGTTTCCCGGGAAAGGTGTAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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| CDS CCA 72 bp | TACACCTTTCCCGGGAAACAAAAATCATTCCTTCTTTaGGTCCTGCAAGCTGTAAAGAACCAATACAGCACT | + |
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Preference number: 6 (lower is better) Translates to: YTFPGKQKSFLL*VLQAVKNQYST Trigger: AGTGCTGTATTGGTTCTTTACAGCTTGCAGGACCCAAAGAAGGAATGATTTTTGTTTCCCGGGAAAGGTGTA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000471357.1 ENST00000659739.1 |
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