RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LINC00866 (Homo sapiens)

Ensembl gene IDs: ENSG00000227356

Ensembl transcript IDs: ENST00000427379.2

Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp CTGCGAGCGGCTCGGGAGCGGTCAGCCTTGCAGGCTGAAGCGTCTTaGCCCGGAAAAATTCCTGCCCCACTGTCCTTCAGGCTGGATGTC +
Preference number: 5 (lower is better)
Translates to: LRAARERSALQAEAS*PGKIPAPLSFRLDV
Trigger: GACATCCAGCCTGAAGGACAGTGGGGCAGGAATTTTTCCGGGGCAAGACGCTTCAGCCTGCAAGGCTGACCGCTCCCGAGCCGCTCGCAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000427379.2
CDS CCA 90 bp AGGCTGGCAGTGGTGGGATTTTGGAATAGGCTGGGCTCCAGTCTCTaGATTCCCACTAGAGGAGTGGAGACTCCTGTGGGGATTGGTGAG +
Preference number: 5 (lower is better)
Translates to: RLAVVGFWNRLGSSL*IPTRGVETPVGIGE
Trigger: CTCACCAATCCCCACAGGAGTCTCCACTCCTCTAGTGGGAATCCAGAGACTGGAGCCCAGCCTATTCCAAAATCCCACCACTGCCAGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000427379.2
CDS CCA 90 bp CTCCTGTGGGGATTGGTGAGGATCAGGATGGTCTCTAATTCCAAATaGGCCGGTTACAAGAACTTGCTGACTGCCTCCTCTCCACGCCTC +
Preference number: 5 (lower is better)
Translates to: LLWGLVRIRMVSNSK*AGYKNLLTASSPRL
Trigger: GAGGCGTGGAGAGGAGGCAGTCAGCAAGTTCTTGTAACCGGCCCATTTGGAATTAGAGACCATCCTGATCCTCACCAATCCCCACAGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427379.2
CDS CCA 90 bp GCAAATGGAATTGCAGGCTGGCAGTGGTGGGATTTTGGAATAGGCTaGGCTCCAGTCTCTGGATTCCCACTAGAGGAGTGGAGACTCCTG +
Preference number: 5 (lower is better)
Translates to: ANGIAGWQWWDFGIG*APVSGFPLEEWRLL
Trigger: CAGGAGTCTCCACTCCTCTAGTGGGAATCCAGAGACTGGAGCCCAGCCTATTCCAAAATCCCACCACTGCCAGCCTGCAATTCCATTTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427379.2
CDS TCA 90 bp TCAGGATGGTCTCTAATTCCAAATGGGCCGGTTACAAGAACTTGCTaGCTGCCTCCTCTCCACGCCTCTGTCCGTGCTCTTTCTGTAGTC +
Preference number: 5 (lower is better)
Translates to: SGWSLIPNGPVTRTC*LPPLHASVRALSVV
Trigger: GACTACAGAAAGAGCACGGACAGAGGCGTGGAGAGGAGGCAGTCAGCAAGTTCTTGTAACCGGCCCATTTGGAATTAGAGACCATCCTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000427379.2
CDS CCA 90 bp GTGCTTTCATTCAGAGGAGTGGCAAATGGAATTGCAGGCTGGCAGTaGTGGGATTTTGGAATAGGCTGGGCTCCAGTCTCTGGATTCCCA +
Preference number: 5 (lower is better)
Translates to: VLSFRGVANGIAGWQ*WDFGIGWAPVSGFP
Trigger: TGGGAATCCAGAGACTGGAGCCCAGCCTATTCCAAAATCCCACCACTGCCAGCCTGCAATTCCATTTGCCACTCCTCTGAATGAAAGCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427379.2
CDS CCA 90 bp GGACCTTCAGGAGACAACAGTGCTTTCATTCAGAGGAGTGGCAAATaGAATTGCAGGCTGGCAGTGGTGGGATTTTGGAATAGGCTGGGC +
Preference number: 5 (lower is better)
Translates to: GPSGDNSAFIQRSGK*NCRLAVVGFWNRLG
Trigger: GCCCAGCCTATTCCAAAATCCCACCACTGCCAGCCTGCAATTCCATTTGCCACTCCTCTGAATGAAAGCACTGTTGTCTCCTGAAGGTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427379.2
CDS CCA 90 bp CTTTCATTCAGAGGAGTGGCAAATGGAATTGCAGGCTGGCAGTGGTaGGATTTTGGAATAGGCTGGGCTCCAGTCTCTGGATTCCCACTA +
Preference number: 5 (lower is better)
Translates to: LSFRGVANGIAGWQW*DFGIGWAPVSGFPL
Trigger: TAGTGGGAATCCAGAGACTGGAGCCCAGCCTATTCCAAAATCCCACCACTGCCAGCCTGCAATTCCATTTGCCACTCCTCTGAATGAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427379.2
CDS CCA 90 bp ACAACAGTGCTTTCATTCAGAGGAGTGGCAAATGGAATTGCAGGCTaGCAGTGGTGGGATTTTGGAATAGGCTGGGCTCCAGTCTCTGGA +
Preference number: 5 (lower is better)
Translates to: TTVLSFRGVANGIAG*QWWDFGIGWAPVSG
Trigger: TCCAGAGACTGGAGCCCAGCCTATTCCAAAATCCCACCACTGCCAGCCTGCAATTCCATTTGCCACTCCTCTGAATGAAAGCACTGTTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427379.2
CDS GCA 90 bp CTTCTCCATTTATTGTGTCCCTCTGGGACCTTCAGGAGACAACAGTaGTTTCATTCAGAGGAGTGGCAAATGGAATTGCAGGCTGGCAGT +
Preference number: 5 (lower is better)
Translates to: LLHLLCPSGTFRRQQ*FHSEEWQMELQAGS
Trigger: ACTGCCAGCCTGCAATTCCATTTGCCACTCCTCTGAATGAAAGCACTGTTGTCTCCTGAAGGTCCCAGAGGGACACAATAAATGGAGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000427379.2
CDS GCA 72 bp CTGCGGGCCTGCGAGCGGCTCGGGAGCGGTCAGCCTTaGAGGCTGAAGCGTCTTGCCCCGGAAAAATTCCTG +
Preference number: 6 (lower is better)
Translates to: LRACERLGSGQP*RLKRLAPEKFL
Trigger: CAGGAATTTTTCCGGGGCAAGACGCTTCAGCCTGCAAGGCTGACCGCTCCCGAGCCGCTCGCAGGCCCGCAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000427379.2
CDS CAA 72 bp TCTGCGGGCCTGCGAGCGGCTCGGGAGCGGTCAGCCTaGCAGGCTGAAGCGTCTTGCCCCGGAAAAATTCCT +
Preference number: 6 (lower is better)
Translates to: SAGLRAARERSA*QAEASCPGKIP
Trigger: AGGAATTTTTCCGGGGCAAGACGCTTCAGCCTGCAAGGCTGACCGCTCCCGAGCCGCTCGCAGGCCCGCAGA
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000427379.2
CDS GCA 72 bp CCACGCCTCTGTCCGTGCTCTTTCTGTAGTCTGGACTaGTCTCCTCCCAACTCTGCGGGCCTGCGAGCGGCT +
Preference number: 6 (lower is better)
Translates to: PRLCPCSFCSLD*SPPNSAGLRAA
Trigger: AGCCGCTCGCAGGCCCGCAGAGTTGGGAGGAGAGCAGTCCAGACTACAGAAAGAGCACGGACAGAGGCGTGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000427379.2
CDS GCA 72 bp GCTCGGGAGCGGTCAGCCTTGCAGGCTGAAGCGTCTTaGCCCGGAAAAATTCCTGCCCCACTGTCCTTCAGG +
Preference number: 6 (lower is better)
Translates to: ARERSALQAEAS*PGKIPAPLSFR
Trigger: CCTGAAGGACAGTGGGGCAGGAATTTTTCCGGGGCAAGACGCTTCAGCCTGCAAGGCTGACCGCTCCCGAGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000427379.2
CDS CCA 72 bp CCTCTCCACGCCTCTGTCCGTGCTCTTTCTGTAGTCTaGACTGCTCTCCTCCCAACTCTGCGGGCCTGCGAG +
Preference number: 6 (lower is better)
Translates to: PLHASVRALSVV*TALLPTLRACE
Trigger: CTCGCAGGCCCGCAGAGTTGGGAGGAGAGCAGTCCAGACTACAGAAAGAGCACGGACAGAGGCGTGGAGAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000427379.2
CDS CCA 72 bp GTGGTGGGATTTTGGAATAGGCTGGGCTCCAGTCTCTaGATTCCCACTAGAGGAGTGGAGACTCCTGTGGGG +
Preference number: 6 (lower is better)
Translates to: VVGFWNRLGSSL*IPTRGVETPVG
Trigger: CCCCACAGGAGTCTCCACTCCTCTAGTGGGAATCCAGAGACTGGAGCCCAGCCTATTCCAAAATCCCACCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427379.2
CDS CCA 72 bp TTCAGAGGAGTGGCAAATGGAATTGCAGGCTGGCAGTaGTGGGATTTTGGAATAGGCTGGGCTCCAGTCTCT +
Preference number: 6 (lower is better)
Translates to: FRGVANGIAGWQ*WDFGIGWAPVS
Trigger: AGAGACTGGAGCCCAGCCTATTCCAAAATCCCACCACTGCCAGCCTGCAATTCCATTTGCCACTCCTCTGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427379.2
CDS CCA 72 bp ACCTTCAGGAGACAACAGTGCTTTCATTCAGAGGAGTaGCAAATGGAATTGCAGGCTGGCAGTGGTGGGATT +
Preference number: 6 (lower is better)
Translates to: TFRRQQCFHSEE*QMELQAGSGGI
Trigger: AATCCCACCACTGCCAGCCTGCAATTCCATTTGCCACTCCTCTGAATGAAAGCACTGTTGTCTCCTGAAGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000427379.2
CDS GCA 72 bp TTATTGTGTCCCTCTGGGACCTTCAGGAGACAACAGTaGTTTCATTCAGAGGAGTGGCAAATGGAATTGCAG +
Preference number: 6 (lower is better)
Translates to: LLCPSGTFRRQQ*FHSEEWQMELQ
Trigger: CTGCAATTCCATTTGCCACTCCTCTGAATGAAAGCACTGTTGTCTCCTGAAGGTCCCAGAGGGACACAATAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000427379.2