Pregenerated sensors for LINC00857 (Homo sapiens)
Ensembl gene IDs: ENSG00000237523Ensembl transcript IDs: ENST00000422847.1, ENST00000432308.1, ENST00000660450.1, ENST00000671081.1
Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GGAGAAAAATGGGCCTTTCGAAGAAGCTGGCCTTCGCGGTCGCTGTaGGGCGGCAGAGCAGGCGCAGGCGTCCAGGCAGTGGGGGCTGGG | + |
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Preference number: 5 (lower is better) Translates to: GEKWAFRRSWPSRSL*GGRAGAGVQAVGAG Trigger: CCCAGCCCCCACTGCCTGGACGCCTGCGCCTGCTCTGCCGCCCCACAGCGACCGCGAAGGCCAGCTTCTTCGAAAGGCCCATTTTTCTCC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000660450.1 ENST00000671081.1 |
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| CDS TCA 90 bp | CGCGTTCTCTGGGGGTGCCTGGGCGGTGACCCCTGCCATTGGCCTTaGGGATTAGGGCCTCAGCTCGGGTCCTCTGCAGAGCCTCCTCAG | + |
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Preference number: 5 (lower is better) Translates to: RVLWGCLGGDPCHWP*GLGPQLGSSAEPPQ Trigger: CTGAGGAGGCTCTGCAGAGGACCCGAGCTGAGGCCCTAATCCTCAAGGCCAATGGCAGGGGTCACCGCCCAGGCACCCCCAGAGAACGCG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000422847.1 ENST00000660450.1 ENST00000671081.1 |
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| CDS CCA 90 bp | GAGCATTCGCTCAGCCACGGAGAAAAATGGGCCTTTCGAAGAAGCTaGCCTTCGCGGTCGCTGTGGGGCGGCAGAGCAGGCGCAGGCGTC | + |
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Preference number: 5 (lower is better) Translates to: EHSLSHGEKWAFRRS*PSRSLWGGRAGAGV Trigger: GACGCCTGCGCCTGCTCTGCCGCCCCACAGCGACCGCGAAGGCCAGCTTCTTCGAAAGGCCCATTTTTCTCCGTGGCTGAGCGAATGCTC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000660450.1 ENST00000671081.1 |
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| CDS GCA 90 bp | CCCCTGCCATTGGCCTTGAGGATTAGGGCCTCAGCTCGGGTCCTCTaGAGAGCCTCCTCAGTCCCTAGCAACTTGCTGGCACCTAGCCGG | + |
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Preference number: 5 (lower is better) Translates to: PLPLALRIRASARVL*RASSVPSNLLAPSR Trigger: CCGGCTAGGTGCCAGCAAGTTGCTAGGGACTGAGGAGGCTCTGCAGAGGACCCGAGCTGAGGCCCTAATCCTCAAGGCCAATGGCAGGGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000422847.1 ENST00000660450.1 ENST00000671081.1 |
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| CDS CCA 90 bp | CCAGGAGACCTTCCCGGACCAATCCCCGGGCCCAGAGAGAGCGCCTaGAGACCTTACCTCCCCAGGAAATTCACACAGATTTCTTGGGGG | + |
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Preference number: 5 (lower is better) Translates to: PGDLPGPIPGPRESA*RPYLPRKFTQISWG Trigger: CCCCCAAGAAATCTGTGTGAATTTCCTGGGGAGGTAAGGTCTCCAGGCGCTCTCTCTGGGCCCGGGGATTGGTCCGGGAAGGTCTCCTGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000660450.1 |
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| CDS TCA 90 bp | CTCCTACGCCGCAGCAGGCGCCCCCACCAGGGTAATAACCCACTCTaGGAGTCTCTGGTGGTGCCTCTGATCCTCTGCTCTTCTGTTCCA | + |
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Preference number: 5 (lower is better) Translates to: LLRRSRRPHQGNNPL*ESLVVPLILCSSVP Trigger: TGGAACAGAAGAGCAGAGGATCAGAGGCACCACCAGAGACTCTCAGAGTGGGTTATTACCCTGGTGGGGGCGCCTGCTGCGGCGTAGGAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000660450.1 |
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| CDS TCA 90 bp | CCCACCAGGGTAATAACCCACTCTGAGAGTCTCTGGTGGTGCCTCTaGTCCTCTGCTCTTCTGTTCCAGGCAGCGTTTTCTCCGAGCGGC | + |
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Preference number: 5 (lower is better) Translates to: PTRVITHSESLWWCL*SSALLFQAAFSPSG Trigger: GCCGCTCGGAGAAAACGCTGCCTGGAACAGAAGAGCAGAGGATCAGAGGCACCACCAGAGACTCTCAGAGTGGGTTATTACCCTGGTGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000660450.1 |
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| CDS CCA 90 bp | GAGAGAACAGTGCAGGTGAAAGGAGCTTCTCTTCCTGGGTCTGGCTaGTGTGAGGAGATCCAGTGGTACTCTGCTCCAGTCACGTGCCCA | + |
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Preference number: 5 (lower is better) Translates to: ERTVQVKGASLPGSG*CEEIQWYSAPVTCP Trigger: TGGGCACGTGACTGGAGCAGAGTACCACTGGATCTCCTCACACCAGCCAGACCCAGGAAGAGAAGCTCCTTTCACCTGCACTGTTCTCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000422847.1 ENST00000432308.1 ENST00000660450.1 ENST00000671081.1 |
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| CDS CCA 90 bp | ATCCTCTGCTCTTCTGTTCCAGGCAGCGTTTTCTCCGAGCGGCTCTaGAGACTTTGGCCTGAGTTTCACCCTCACTCGCCGACTCATGTC | + |
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Preference number: 5 (lower is better) Translates to: ILCSSVPGSVFSERL*RLWPEFHPHSPTHV Trigger: GACATGAGTCGGCGAGTGAGGGTGAAACTCAGGCCAAAGTCTCCAGAGCCGCTCGGAGAAAACGCTGCCTGGAACAGAAGAGCAGAGGAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000660450.1 |
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| CDS TCA 90 bp | AACAGTGCAGGTGAAAGGAGCTTCTCTTCCTGGGTCTGGCTGGTGTaGGGAGATCCAGTGGTACTCTGCTCCAGTCACGTGCCCAGAAGA | + |
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Preference number: 5 (lower is better) Translates to: NSAGERSFSSWVWLV*GDPVVLCSSHVPRR Trigger: TCTTCTGGGCACGTGACTGGAGCAGAGTACCACTGGATCTCCTCACACCAGCCAGACCCAGGAAGAGAAGCTCCTTTCACCTGCACTGTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000422847.1 ENST00000432308.1 ENST00000660450.1 ENST00000671081.1 |
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| CDS CCA 90 bp | TCCTCCCAACACAGGCACCACGCGATCCATGCCTTCTGTCCGCACTaGAGACCCAATCATTCTACATGCTCATACACTCAACCCAGCAGT | + |
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Preference number: 5 (lower is better) Translates to: SSQHRHHAIHAFCPH*RPNHSTCSYTQPSS Trigger: ACTGCTGGGTTGAGTGTATGAGCATGTAGAATGATTGGGTCTCCAGTGCGGACAGAAGGCATGGATCGCGTGGTGCCTGTGTTGGGAGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000422847.1 ENST00000432308.1 ENST00000660450.1 ENST00000671081.1 |
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| CDS CCA 90 bp | CAGCTCGGGTCCTCTGCAGAGCCTCCTCAGTCCCTAGCAACTTGCTaGCACCTAGCCGGGGCTAAACGCAGGTTTGTTGAAAATTATAAA | + |
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Preference number: 5 (lower is better) Translates to: QLGSSAEPPQSLATC*HLAGAKRRFVENYK Trigger: TTTATAATTTTCAACAAACCTGCGTTTAGCCCCGGCTAGGTGCCAGCAAGTTGCTAGGGACTGAGGAGGCTCTGCAGAGGACCCGAGCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000422847.1 ENST00000660450.1 ENST00000671081.1 |
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| CDS TCA 90 bp | GTAAGCCCAGGGGTAGCTATTCACCATTCTGGGTTTGAAGAGCTCTaGTGCAGAAAGGTGTATACATCCAGCAGGAATTCCACCCTACAT | + |
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Preference number: 5 (lower is better) Translates to: VSPGVAIHHSGFEEL*CRKVYTSSRNSTLH Trigger: ATGTAGGGTGGAATTCCTGCTGGATGTATACACCTTTCTGCATCAGAGCTCTTCAAACCCAGAATGGTGAATAGCTACCCCTGGGCTTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000422847.1 ENST00000660450.1 ENST00000671081.1 |
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| CDS GCA 90 bp | GTTACAACTTATTACTTCTCAGCTCCATATTCACCCACTAATACCTaGTCTGTGATAATGGACAGGATTCCCATGAGCATTTCTCCTGTA | + |
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Preference number: 5 (lower is better) Translates to: VTTYYFSAPYSPTNT*SVIMDRIPMSISPV Trigger: TACAGGAGAAATGCTCATGGGAATCCTGTCCATTATCACAGAGCAGGTATTAGTGGGTGAATATGGAGCTGAGAAGTAATAAGTTGTAAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000422847.1 ENST00000432308.1 ENST00000660450.1 ENST00000671081.1 |
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| CDS TCA 72 bp | TGGGGGTGCCTGGGCGGTGACCCCTGCCATTGGCCTTaGGGATTAGGGCCTCAGCTCGGGTCCTCTGCAGAG | + |
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Preference number: 6 (lower is better) Translates to: WGCLGGDPCHWP*GLGPQLGSSAE Trigger: CTCTGCAGAGGACCCGAGCTGAGGCCCTAATCCTCAAGGCCAATGGCAGGGGTCACCGCCCAGGCACCCCCA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000422847.1 ENST00000660450.1 ENST00000671081.1 |
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| CDS CCA 72 bp | CTCAGCCACGGAGAAAAATGGGCCTTTCGAAGAAGCTaGCCTTCGCGGTCGCTGTGGGGCGGCAGAGCAGGC | + |
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Preference number: 6 (lower is better) Translates to: LSHGEKWAFRRS*PSRSLWGGRAG Trigger: GCCTGCTCTGCCGCCCCACAGCGACCGCGAAGGCCAGCTTCTTCGAAAGGCCCATTTTTCTCCGTGGCTGAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000660450.1 ENST00000671081.1 |
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| CDS CCA 72 bp | CCAGGCAGCGTTTTCTCCGAGCGGCTCTGGAGACTTTaGCCTGAGTTTCACCCTCACTCGCCGACTCATGTC | + |
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Preference number: 6 (lower is better) Translates to: PGSVFSERLWRL*PEFHPHSPTHV Trigger: GACATGAGTCGGCGAGTGAGGGTGAAACTCAGGCCAAAGTCTCCAGAGCCGCTCGGAGAAAACGCTGCCTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000660450.1 |
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| CDS CCA 72 bp | CTTCCCGGACCAATCCCCGGGCCCAGAGAGAGCGCCTaGAGACCTTACCTCCCCAGGAAATTCACACAGATT | + |
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Preference number: 6 (lower is better) Translates to: LPGPIPGPRESA*RPYLPRKFTQI Trigger: AATCTGTGTGAATTTCCTGGGGAGGTAAGGTCTCCAGGCGCTCTCTCTGGGCCCGGGGATTGGTCCGGGAAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000660450.1 |
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| CDS CAA 90 bp | GCTGGTTGGTCAGGGATGAACTCACAGGGAGTCGAAGCTGTCTTCTaGCGCTTCGTCAGTTCCCGGGTGGGGGCCACAAGATCAGACGAG | + |
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Preference number: 6 (lower is better) Translates to: AGWSGMNSQGVEAVF*RFVSSRVGATRSDE Trigger: CTCGTCTGATCTTGTGGCCCCCACCCGGGAACTGACGAAGCGCAAGAAGACAGCTTCGACTCCCTGTGAGTTCATCCCTGACCAACCAGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000422847.1 ENST00000660450.1 ENST00000671081.1 |
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| CDS CCA 72 bp | TCTCTTCCTGGGTCTGGCTGGTGTGAGGAGATCCAGTaGTACTCTGCTCCAGTCACGTGCCCAGAAGATCCC | + |
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Preference number: 6 (lower is better) Translates to: SLPGSGWCEEIQ*YSAPVTCPEDP Trigger: GGGATCTTCTGGGCACGTGACTGGAGCAGAGTACCACTGGATCTCCTCACACCAGCCAGACCCAGGAAGAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000422847.1 ENST00000432308.1 ENST00000660450.1 ENST00000671081.1 |
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| CDS CAA 72 bp | TCAGGGATGAACTCACAGGGAGTCGAAGCTGTCTTCTaGCGCTTCGTCAGTTCCCGGGTGGGGGCCACAAGA | + |
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Preference number: 6 (lower is better) Translates to: SGMNSQGVEAVF*RFVSSRVGATR Trigger: TCTTGTGGCCCCCACCCGGGAACTGACGAAGCGCAAGAAGACAGCTTCGACTCCCTGTGAGTTCATCCCTGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000422847.1 ENST00000660450.1 ENST00000671081.1 |
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| CDS CAA 72 bp | CTTGGTAGGGGGAAGCCAGTGAGCCAGGAGTGCTGGTaGGTCAGGGATGAACTCACAGGGAGTCGAAGCTGT | + |
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Preference number: 6 (lower is better) Translates to: LGRGKPVSQECW*VRDELTGSRSC Trigger: ACAGCTTCGACTCCCTGTGAGTTCATCCCTGACCAACCAGCACTCCTGGCTCACTGGCTTCCCCCTACCAAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000422847.1 ENST00000660450.1 ENST00000671081.1 |
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| CDS TCA 72 bp | GGTGAAAGGAGCTTCTCTTCCTGGGTCTGGCTGGTGTaGGGAGATCCAGTGGTACTCTGCTCCAGTCACGTG | + |
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Preference number: 6 (lower is better) Translates to: GERSFSSWVWLV*GDPVVLCSSHV Trigger: CACGTGACTGGAGCAGAGTACCACTGGATCTCCTCACACCAGCCAGACCCAGGAAGAGAAGCTCCTTTCACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000422847.1 ENST00000432308.1 ENST00000660450.1 ENST00000671081.1 |
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| CDS TCA 72 bp | GAAGCCAGTGAGCCAGGAGTGCTGGTTGGTCAGGGATaGACTCACAGGGAGTCGAAGCTGTCTTCTTGCGCT | + |
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Preference number: 6 (lower is better) Translates to: EASEPGVLVGQG*THRESKLSSCA Trigger: AGCGCAAGAAGACAGCTTCGACTCCCTGTGAGTTCATCCCTGACCAACCAGCACTCCTGGCTCACTGGCTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000422847.1 ENST00000660450.1 ENST00000671081.1 |
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| CDS CCA 72 bp | GTGCAGGTGAAAGGAGCTTCTCTTCCTGGGTCTGGCTaGTGTGAGGAGATCCAGTGGTACTCTGCTCCAGTC | + |
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Preference number: 6 (lower is better) Translates to: VQVKGASLPGSG*CEEIQWYSAPV Trigger: GACTGGAGCAGAGTACCACTGGATCTCCTCACACCAGCCAGACCCAGGAAGAGAAGCTCCTTTCACCTGCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000422847.1 ENST00000432308.1 ENST00000660450.1 ENST00000671081.1 |
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| CDS GCA 72 bp | GCCTTCTGTCCGCACTGGAGACCCAATCATTCTACATaGTCATACACTCAACCCAGCAGTGTGGCTCGCATG | + |
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Preference number: 6 (lower is better) Translates to: AFCPHWRPNHST*SYTQPSSVARM Trigger: CATGCGAGCCACACTGCTGGGTTGAGTGTATGAGCATGTAGAATGATTGGGTCTCCAGTGCGGACAGAAGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000422847.1 ENST00000432308.1 ENST00000660450.1 ENST00000671081.1 |
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| CDS GCA 72 bp | CTTAGTATCCTCCCAACACAGGCACCACGCGATCCATaGCTTCTGTCCGCACTGGAGACCCAATCATTCTAC | + |
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Preference number: 6 (lower is better) Translates to: LSILPTQAPRDP*LLSALETQSFY Trigger: GTAGAATGATTGGGTCTCCAGTGCGGACAGAAGGCATGGATCGCGTGGTGCCTGTGTTGGGAGGATACTAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000422847.1 ENST00000432308.1 ENST00000660450.1 ENST00000671081.1 |
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| CDS CAA 72 bp | CAACCCAGCAGTGTGGCTCGCATGGGCTGTGGAGGTTaGTTTCCTGCTTGTCCAATAATTGCAACCAGCTCT | + |
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Preference number: 6 (lower is better) Translates to: QPSSVARMGCGG*FPACPIIATSS Trigger: AGAGCTGGTTGCAATTATTGGACAAGCAGGAAACAAACCTCCACAGCCCATGCGAGCCACACTGCTGGGTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000422847.1 ENST00000432308.1 ENST00000660450.1 ENST00000671081.1 |
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| CDS CCA 72 bp | ATACACTCAACCCAGCAGTGTGGCTCGCATGGGCTGTaGAGGTTTGTTTCCTGCTTGTCCAATAATTGCAAC | + |
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Preference number: 6 (lower is better) Translates to: IHSTQQCGSHGL*RFVSCLSNNCN Trigger: GTTGCAATTATTGGACAAGCAGGAAACAAACCTCCACAGCCCATGCGAGCCACACTGCTGGGTTGAGTGTAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000422847.1 ENST00000432308.1 ENST00000660450.1 ENST00000671081.1 |
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| CDS TCA 72 bp | ACTCAGCAAATCTCTCTGCTATGTAGGGGGCTGCAATaGTACCTTCTCCAACAATGTCTGATCTCCAGCCTG | + |
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Preference number: 6 (lower is better) Translates to: TQQISLLCRGLQ*YLLQQCLISSL Trigger: CAGGCTGGAGATCAGACATTGTTGGAGAAGGTATCATTGCAGCCCCCTACATAGCAGAGAGATTTGCTGAGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000422847.1 ENST00000432308.1 ENST00000660450.1 ENST00000671081.1 |
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| CDS TCA 72 bp | AGAATTTTTAAGCATAACTTGGTAGGGGGAAGCCAGTaGGCCAGGAGTGCTGGTTGGTCAGGGATGAACTCA | + |
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Preference number: 6 (lower is better) Translates to: RIFKHNLVGGSQ*ARSAGWSGMNS Trigger: TGAGTTCATCCCTGACCAACCAGCACTCCTGGCTCACTGGCTTCCCCCTACCAAGTTATGCTTAAAAATTCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENST00000422847.1 ENST00000660450.1 ENST00000671081.1 |
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| CDS TCA 72 bp | GGGGTAGCTATTCACCATTCTGGGTTTGAAGAGCTCTaGTGCAGAAAGGTGTATACATCCAGCAGGAATTCC | + |
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Preference number: 6 (lower is better) Translates to: GVAIHHSGFEEL*CRKVYTSSRNS Trigger: GGAATTCCTGCTGGATGTATACACCTTTCTGCATCAGAGCTCTTCAAACCCAGAATGGTGAATAGCTACCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000422847.1 ENST00000660450.1 ENST00000671081.1 |
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| CDS TCA 72 bp | TCTTGGGTACTCTTCTCCACCTTCCCTTACCTTGTATaGTGTTTCTATGAGCCCTGGGAAACAATGAAGCAG | + |
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Preference number: 6 (lower is better) Translates to: SWVLFSTFPYLV*CFYEPWETMKQ Trigger: CTGCTTCATTGTTTCCCAGGGCTCATAGAAACATCATACAAGGTAAGGGAAGGTGGAGAAGAGTACCCAAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000671081.1 |
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| CDS CAA 72 bp | AGTGTCAGAATCAGAACTAGAATAGATCCCACACATTaGAACACCGAGTTTGGTGTCTTTTCCTTCACACCG | + |
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Preference number: 6 (lower is better) Translates to: SVRIRTRIDPTH*NTEFGVFSFTP Trigger: CGGTGTGAAGGAAAAGACACCAAACTCGGTGTTCAAATGTGTGGGATCTATTCTAGTTCTGATTCTGACACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000422847.1 ENST00000660450.1 ENST00000671081.1 |
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