Pregenerated sensors for LINC00852 (Homo sapiens)
Ensembl gene IDs: ENSG00000231177Ensembl transcript IDs: ENST00000475197.1, ENST00000538717.1
Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | ACCACAGAGGGTGCTAGGAGCCGAGCGTCTCCCCAAGTAAAATTCTaGCCGCCACACATGCAGGCACTAACTACTGATCAGGTGCGGCAG | + |
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Preference number: 5 (lower is better) Translates to: TTEGARSRASPQVKF*PPHMQALTTDQVRQ Trigger: CTGCCGCACCTGATCAGTAGTTAGTGCCTGCATGTGTGGCGGCCAGAATTTTACTTGGGGAGACGCTCGGCTCCTAGCACCCTCTGTGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000475197.1 ENST00000538717.1 |
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| CDS CCA 90 bp | CCCGGGGGAAGGCCACTCGGTCATGCCCACCTTAGCCTAAACATGTaGACTGACTTGACTGTAGGCAACGGATGGGACACATCGCTAAGG | + |
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Preference number: 5 (lower is better) Translates to: PGGRPLGHAHLSLNM*TDLTVGNGWDTSLR Trigger: CCTTAGCGATGTGTCCCATCCGTTGCCTACAGTCAAGTCAGTCCACATGTTTAGGCTAAGGTGGGCATGACCGAGTGGCCTTCCCCCGGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000475197.1 ENST00000538717.1 |
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| CDS CCA 90 bp | ATGGGCAAGGCTGGCCGTCGCCATGGTTCCCTTACTGATACCAGGTaGGATCCCCAAACATTCCCTCAACTCCAGTTCACAGCAGACACG | + |
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Preference number: 5 (lower is better) Translates to: MGKAGRRHGSLTDTR*DPQTFPQLQFTADT Trigger: CGTGTCTGCTGTGAACTGGAGTTGAGGGAATGTTTGGGGATCCCACCTGGTATCAGTAAGGGAACCATGGCGACGGCCAGCCTTGCCCAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000475197.1 ENST00000538717.1 |
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| CDS TCA 90 bp | AATGCCTCACATGGGCAAGGCTGGCCGTCGCCATGGTTCCCTTACTaGTACCAGGTGGGATCCCCAAACATTCCCTCAACTCCAGTTCAC | + |
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Preference number: 5 (lower is better) Translates to: NASHGQGWPSPWFPY*YQVGSPNIPSTPVH Trigger: GTGAACTGGAGTTGAGGGAATGTTTGGGGATCCCACCTGGTATCAGTAAGGGAACCATGGCGACGGCCAGCCTTGCCCATGTGAGGCATT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000475197.1 ENST00000538717.1 |
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| CDS TCA 90 bp | TCCCCAAGTAAAATTCTGGCCGCCACACATGCAGGCACTAACTACTaGTCAGGTGCGGCAGGCAGACAGAAACCCAACTGCTCTCCCTCA | + |
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Preference number: 5 (lower is better) Translates to: SPSKILAATHAGTNY*SGAAGRQKPNCSPS Trigger: TGAGGGAGAGCAGTTGGGTTTCTGTCTGCCTGCCGCACCTGATCAGTAGTTAGTGCCTGCATGTGTGGCGGCCAGAATTTTACTTGGGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000475197.1 ENST00000538717.1 |
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| CDS GCA 90 bp | ACCACAGACTTGCCAATTCAGCCATCTGAGCGCTTGTGGGAAACATaGAGGAAGCCGTCTGCAGAGACAGTTGGGGTAATGCCCACACTC | + |
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Preference number: 5 (lower is better) Translates to: TTDLPIQPSERLWET*RKPSAETVGVMPTL Trigger: GAGTGTGGGCATTACCCCAACTGTCTCTGCAGACGGCTTCCTGCATGTTTCCCACAAGCGCTCAGATGGCTGAATTGGCAAGTCTGTGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000475197.1 ENST00000538717.1 |
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| CDS GCA 90 bp | GAAAGGCAAAGAACGAGGTGGCCCCAAAGAGCAGCACCACAGACTTaGCAATTCAGCCATCTGAGCGCTTGTGGGAAACATGCAGGAAGC | + |
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Preference number: 5 (lower is better) Translates to: ERQRTRWPQRAAPQT*QFSHLSACGKHAGS Trigger: GCTTCCTGCATGTTTCCCACAAGCGCTCAGATGGCTGAATTGGCAAGTCTGTGGTGCTGCTCTTTGGGGCCACCTCGTTCTTTGCCTTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000475197.1 ENST00000538717.1 |
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| CDS CCA 90 bp | CACCTTAGCCTAAACATGTGGACTGACTTGACTGTAGGCAACGGATaGGACACATCGCTAAGGGGAGGGAAAGGCAAAGAACGAGGTGGC | + |
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Preference number: 5 (lower is better) Translates to: HLSLNMWTDLTVGNG*DTSLRGGKGKERGG Trigger: GCCACCTCGTTCTTTGCCTTTCCCTCCCCTTAGCGATGTGTCCCATCCGTTGCCTACAGTCAAGTCAGTCCACATGTTTAGGCTAAGGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000475197.1 ENST00000538717.1 |
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| CDS TCA 90 bp | GAGAGGAAGAACAAAGACACAGTTCCTTTAAACATCAGGGCTTCCTaGGTGCAAGGCTGCATTAACAGCTTATTAACAACCAGCCAGGGC | + |
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Preference number: 5 (lower is better) Translates to: ERKNKDTVPLNIRAS*VQGCINSLLTTSQG Trigger: GCCCTGGCTGGTTGTTAATAAGCTGTTAATGCAGCCTTGCACTCAGGAAGCCCTGATGTTTAAAGGAACTGTGTCTTTGTTCTTCCTCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000475197.1 ENST00000538717.1 |
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| CDS GCA 90 bp | AAACCTAATCACACCAGCTCACTCAAGCAGAGAAGCTACTGCATGTaGATGCATTGTGTGGAATTAAGACTGGGTTTCTTAGAGAAGGAG | + |
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Preference number: 5 (lower is better) Translates to: KPNHTSSLKQRSYCM*MHCVELRLGFLEKE Trigger: CTCCTTCTCTAAGAAACCCAGTCTTAATTCCACACAATGCATGCACATGCAGTAGCTTCTCTGCTTGAGTGAGCTGGTGTGATTAGGTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000475197.1 ENST00000538717.1 |
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| CDS GCA 90 bp | ATGGTCTGTGGGAAGGGAATAAAAGGACAAGTAGCAAGGCCAATGTaGATGTTTAGAAAACCTAATCACACCAGCTCACTCAAGCAGAGA | + |
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Preference number: 5 (lower is better) Translates to: MVCGKGIKGQVARPM*MFRKPNHTSSLKQR Trigger: TCTCTGCTTGAGTGAGCTGGTGTGATTAGGTTTTCTAAACATGCACATTGGCCTTGCTACTTGTCCTTTTATTCCCTTCCCACAGACCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000475197.1 ENST00000538717.1 |
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| CDS TCA 90 bp | TTATTAACAACCAGCCAGGGCTGTGTGGACAAAGAAACTTCAGGATaGCATTATCGAAGCCAACATCCATTCAAGATTGGAGAGGAAGAC | + |
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Preference number: 5 (lower is better) Translates to: LLTTSQGCVDKETSG*HYRSQHPFKIGEED Trigger: GTCTTCCTCTCCAATCTTGAATGGATGTTGGCTTCGATAATGTCATCCTGAAGTTTCTTTGTCCACACAGCCCTGGCTGGTTGTTAATAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000475197.1 ENST00000538717.1 |
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| CDS GCA 90 bp | TTTAGAAAACCTAATCACACCAGCTCACTCAAGCAGAGAAGCTACTaGATGTGCATGCATTGTGTGGAATTAAGACTGGGTTTCTTAGAG | + |
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Preference number: 5 (lower is better) Translates to: FRKPNHTSSLKQRSY*MCMHCVELRLGFLE Trigger: CTCTAAGAAACCCAGTCTTAATTCCACACAATGCATGCACATGCAGTAGCTTCTCTGCTTGAGTGAGCTGGTGTGATTAGGTTTTCTAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000475197.1 ENST00000538717.1 |
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| CDS CCA 72 bp | GGTGCTAGGAGCCGAGCGTCTCCCCAAGTAAAATTCTaGCCGCCACACATGCAGGCACTAACTACTGATCAG | + |
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Preference number: 6 (lower is better) Translates to: GARSRASPQVKF*PPHMQALTTDQ Trigger: CTGATCAGTAGTTAGTGCCTGCATGTGTGGCGGCCAGAATTTTACTTGGGGAGACGCTCGGCTCCTAGCACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000475197.1 ENST00000538717.1 |
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| CDS CCA 72 bp | GTGGGAAACATGCAGGAAGCCGTCTGCAGAGACAGTTaGGGTAATGCCCACACTCTGGAAAACCCCTACCAC | + |
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Preference number: 6 (lower is better) Translates to: VGNMQEAVCRDS*GNAHTLENPYH Trigger: GTGGTAGGGGTTTTCCAGAGTGTGGGCATTACCCCAACTGTCTCTGCAGACGGCTTCCTGCATGTTTCCCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000475197.1 ENST00000538717.1 |
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| CDS CCA 72 bp | CACATCGCTAAGGGGAGGGAAAGGCAAAGAACGAGGTaGCCCCAAAGAGCAGCACCACAGACTTGCCAATTC | + |
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Preference number: 6 (lower is better) Translates to: HIAKGRERQRTR*PQRAAPQTCQF Trigger: GAATTGGCAAGTCTGTGGTGCTGCTCTTTGGGGCCACCTCGTTCTTTGCCTTTCCCTCCCCTTAGCGATGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000475197.1 ENST00000538717.1 |
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| CDS CCA 72 bp | GCTGGCCGTCGCCATGGTTCCCTTACTGATACCAGGTaGGATCCCCAAACATTCCCTCAACTCCAGTTCACA | + |
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Preference number: 6 (lower is better) Translates to: AGRRHGSLTDTR*DPQTFPQLQFT Trigger: TGTGAACTGGAGTTGAGGGAATGTTTGGGGATCCCACCTGGTATCAGTAAGGGAACCATGGCGACGGCCAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000475197.1 ENST00000538717.1 |
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| CDS CAA 90 bp | AGGCCACTCGGTCATGCCCACCTTAGCCTAAACATGTGGACTGACTaGACTGTAGGCAACGGATGGGACACATCGCTAAGGGGAGGGAAA | + |
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Preference number: 6 (lower is better) Translates to: RPLGHAHLSLNMWTD*TVGNGWDTSLRGGK Trigger: TTTCCCTCCCCTTAGCGATGTGTCCCATCCGTTGCCTACAGTCAAGTCAGTCCACATGTTTAGGCTAAGGTGGGCATGACCGAGTGGCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000475197.1 ENST00000538717.1 |
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| CDS TCA 72 bp | AAAATTCTGGCCGCCACACATGCAGGCACTAACTACTaGTCAGGTGCGGCAGGCAGACAGAAACCCAACTGC | + |
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Preference number: 6 (lower is better) Translates to: KILAATHAGTNY*SGAAGRQKPNC Trigger: GCAGTTGGGTTTCTGTCTGCCTGCCGCACCTGATCAGTAGTTAGTGCCTGCATGTGTGGCGGCCAGAATTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000475197.1 ENST00000538717.1 |
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| CDS GCA 72 bp | AGAACGAGGTGGCCCCAAAGAGCAGCACCACAGACTTaGCAATTCAGCCATCTGAGCGCTTGTGGGAAACAT | + |
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Preference number: 6 (lower is better) Translates to: RTRWPQRAAPQT*QFSHLSACGKH Trigger: ATGTTTCCCACAAGCGCTCAGATGGCTGAATTGGCAAGTCTGTGGTGCTGCTCTTTGGGGCCACCTCGTTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000475197.1 ENST00000538717.1 |
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| CDS CCA 72 bp | AGGCCACTCGGTCATGCCCACCTTAGCCTAAACATGTaGACTGACTTGACTGTAGGCAACGGATGGGACACA | + |
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Preference number: 6 (lower is better) Translates to: RPLGHAHLSLNM*TDLTVGNGWDT Trigger: TGTGTCCCATCCGTTGCCTACAGTCAAGTCAGTCCACATGTTTAGGCTAAGGTGGGCATGACCGAGTGGCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000475197.1 ENST00000538717.1 |
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| CDS CAA 72 bp | AGCACCACAGACTTGCCAATTCAGCCATCTGAGCGCTaGTGGGAAACATGCAGGAAGCCGTCTGCAGAGACA | + |
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Preference number: 6 (lower is better) Translates to: STTDLPIQPSER*WETCRKPSAET Trigger: TGTCTCTGCAGACGGCTTCCTGCATGTTTCCCACAAGCGCTCAGATGGCTGAATTGGCAAGTCTGTGGTGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000475197.1 ENST00000538717.1 |
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| CDS GCA 72 bp | TTGCCAATTCAGCCATCTGAGCGCTTGTGGGAAACATaGAGGAAGCCGTCTGCAGAGACAGTTGGGGTAATG | + |
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Preference number: 6 (lower is better) Translates to: LPIQPSERLWET*RKPSAETVGVM Trigger: CATTACCCCAACTGTCTCTGCAGACGGCTTCCTGCATGTTTCCCACAAGCGCTCAGATGGCTGAATTGGCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000475197.1 ENST00000538717.1 |
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| CDS CCA 72 bp | ACCACAGACTTGCCAATTCAGCCATCTGAGCGCTTGTaGGAAACATGCAGGAAGCCGTCTGCAGAGACAGTT | + |
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Preference number: 6 (lower is better) Translates to: TTDLPIQPSERL*ETCRKPSAETV Trigger: AACTGTCTCTGCAGACGGCTTCCTGCATGTTTCCCACAAGCGCTCAGATGGCTGAATTGGCAAGTCTGTGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000475197.1 ENST00000538717.1 |
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| CDS CAA 72 bp | GGTCATGCCCACCTTAGCCTAAACATGTGGACTGACTaGACTGTAGGCAACGGATGGGACACATCGCTAAGG | + |
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Preference number: 6 (lower is better) Translates to: GHAHLSLNMWTD*TVGNGWDTSLR Trigger: CCTTAGCGATGTGTCCCATCCGTTGCCTACAGTCAAGTCAGTCCACATGTTTAGGCTAAGGTGGGCATGACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000475197.1 ENST00000538717.1 |
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| CDS CCA 72 bp | CTAAACATGTGGACTGACTTGACTGTAGGCAACGGATaGGACACATCGCTAAGGGGAGGGAAAGGCAAAGAA | + |
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Preference number: 6 (lower is better) Translates to: LNMWTDLTVGNG*DTSLRGGKGKE Trigger: TTCTTTGCCTTTCCCTCCCCTTAGCGATGTGTCCCATCCGTTGCCTACAGTCAAGTCAGTCCACATGTTTAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000475197.1 ENST00000538717.1 |
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| CDS GCA 72 bp | ACTGCTCTCCCTCACATAGAAGCTGTGGTCTGTGAATaGCACCGTCATCCAGGGACTCTTAGAAATGTAGAA | + |
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Preference number: 6 (lower is better) Translates to: TALPHIEAVVCE*HRHPGTLRNVE Trigger: TTCTACATTTCTAAGAGTCCCTGGATGACGGTGGCATTCACAGACCACAGCTTCTATGTGAGGGAGAGCAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000475197.1 ENST00000538717.1 |
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| CDS CAA 90 bp | ATCCCCAAACATTCCCTCAACTCCAGTTCACAGCAGACACGAGCCTaGACTCTTATGTTCCACAACTTAATTCCAGTTACGACACTGGTC | + |
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Preference number: 6 (lower is better) Translates to: IPKHSLNSSSQQTRA*TLMFHNLIPVTTLV Trigger: GACCAGTGTCGTAACTGGAATTAAGTTGTGGAACATAAGAGTCAAGGCTCGTGTCTGCTGTGAACTGGAGTTGAGGGAATGTTTGGGGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000475197.1 ENST00000538717.1 |
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| CDS CAA 90 bp | TCACACCAGCTCACTCAAGCAGAGAAGCTACTGCATGTGCATGCATaGTGTGGAATTAAGACTGGGTTTCTTAGAGAAGGAGGAGAGAAA | + |
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Preference number: 6 (lower is better) Translates to: SHQLTQAEKLLHVHA*CGIKTGFLREGGEK Trigger: TTTCTCTCCTCCTTCTCTAAGAAACCCAGTCTTAATTCCACACAATGCATGCACATGCAGTAGCTTCTCTGCTTGAGTGAGCTGGTGTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000475197.1 ENST00000538717.1 |
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| CDS TCA 72 bp | ACCAGCCAGGGCTGTGTGGACAAAGAAACTTCAGGATaGCATTATCGAAGCCAACATCCATTCAAGATTGGA | + |
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Preference number: 6 (lower is better) Translates to: TSQGCVDKETSG*HYRSQHPFKIG Trigger: TCCAATCTTGAATGGATGTTGGCTTCGATAATGTCATCCTGAAGTTTCTTTGTCCACACAGCCCTGGCTGGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000475197.1 ENST00000538717.1 |
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| CDS GCA 72 bp | CACACCAGCTCACTCAAGCAGAGAAGCTACTGCATGTaGATGCATTGTGTGGAATTAAGACTGGGTTTCTTA | + |
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Preference number: 6 (lower is better) Translates to: HTSSLKQRSYCM*MHCVELRLGFL Trigger: TAAGAAACCCAGTCTTAATTCCACACAATGCATGCACATGCAGTAGCTTCTCTGCTTGAGTGAGCTGGTGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000475197.1 ENST00000538717.1 |
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| CDS CAA 72 bp | CATTCCCTCAACTCCAGTTCACAGCAGACACGAGCCTaGACTCTTATGTTCCACAACTTAATTCCAGTTACG | + |
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Preference number: 6 (lower is better) Translates to: HSLNSSSQQTRA*TLMFHNLIPVT Trigger: CGTAACTGGAATTAAGTTGTGGAACATAAGAGTCAAGGCTCGTGTCTGCTGTGAACTGGAGTTGAGGGAATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000475197.1 ENST00000538717.1 |
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| CDS GCA 72 bp | GGGAAGGGAATAAAAGGACAAGTAGCAAGGCCAATGTaGATGTTTAGAAAACCTAATCACACCAGCTCACTC | + |
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Preference number: 6 (lower is better) Translates to: GKGIKGQVARPM*MFRKPNHTSSL Trigger: GAGTGAGCTGGTGTGATTAGGTTTTCTAAACATGCACATTGGCCTTGCTACTTGTCCTTTTATTCCCTTCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000475197.1 ENST00000538717.1 |
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| CDS CAA 72 bp | CTCACTCAAGCAGAGAAGCTACTGCATGTGCATGCATaGTGTGGAATTAAGACTGGGTTTCTTAGAGAAGGA | + |
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Preference number: 6 (lower is better) Translates to: LTQAEKLLHVHA*CGIKTGFLREG Trigger: TCCTTCTCTAAGAAACCCAGTCTTAATTCCACACAATGCATGCACATGCAGTAGCTTCTCTGCTTGAGTGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000475197.1 ENST00000538717.1 |
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| CDS TCA 72 bp | AACAAAGACACAGTTCCTTTAAACATCAGGGCTTCCTaGGTGCAAGGCTGCATTAACAGCTTATTAACAACC | + |
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Preference number: 6 (lower is better) Translates to: NKDTVPLNIRAS*VQGCINSLLTT Trigger: GGTTGTTAATAAGCTGTTAATGCAGCCTTGCACTCAGGAAGCCCTGATGTTTAAAGGAACTGTGTCTTTGTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000475197.1 ENST00000538717.1 |
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