Pregenerated sensors for LINC00850 (Homo sapiens)
Ensembl gene IDs: ENSG00000280752Ensembl transcript IDs: ENST00000629221.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CAA 72 bp | CATATCAGGCAGGAATGTTGTCCCTTGACACTTACATaGAGGGGTTCACCTCCAGCCTTGGTCCTGACCACC | + |
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Preference number: 6 (lower is better) Translates to: HIRQECCPLTLT*RGSPPALVLTT Trigger: GGTGGTCAGGACCAAGGCTGGAGGTGAACCCCTCAATGTAAGTGTCAAGGGACAACATTCCTGCCTGATATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000629221.1 |
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| CDS CAA 72 bp | CTGATTGGCTCACATATCAGGCAGGAATGTTGTCCCTaGACACTTACATTGAGGGGTTCACCTCCAGCCTTG | + |
|
Preference number: 6 (lower is better) Translates to: LIGSHIRQECCP*TLTLRGSPPAL Trigger: CAAGGCTGGAGGTGAACCCCTCAATGTAAGTGTCAAGGGACAACATTCCTGCCTGATATGTGAGCCAATCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000629221.1 |
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| CDS CAA 90 bp | ATTGGCTCACATATCAGGCAGGAATGTTGTCCCTTGACACTTACATaGAGGGGTTCACCTCCAGCCTTGGTCCTGACCACCAAGGAAATA | + |
|
Preference number: 6 (lower is better) Translates to: IGSHIRQECCPLTLT*RGSPPALVLTTKEI Trigger: TATTTCCTTGGTGGTCAGGACCAAGGCTGGAGGTGAACCCCTCAATGTAAGTGTCAAGGGACAACATTCCTGCCTGATATGTGAGCCAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000629221.1 |
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| CDS TCA 72 bp | TCCCTGGTTATGGCTTCACGGATTGTAGTGAACTCCTaGTTGGCTCACATATCAGGCAGGAATGTTGTCCCT | + |
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Preference number: 6 (lower is better) Translates to: SLVMASRIVVNS*LAHISGRNVVP Trigger: AGGGACAACATTCCTGCCTGATATGTGAGCCAATCAGGAGTTCACTACAATCCGTGAAGCCATAACCAGGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000629221.1 |
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| CDS CCA 72 bp | GAAATATTTTACCAGCTCCCACAGCTTCTCCTTCCTTaGTCTGTGCACAGAGTTGTTGCCACACTATGTGAG | + |
|
Preference number: 6 (lower is better) Translates to: EIFYQLPQLLLP*SVHRVVATLCE Trigger: CTCACATAGTGTGGCAACAACTCTGTGCACAGACCAAGGAAGGAGAAGCTGTGGGAGCTGGTAAAATATTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000629221.1 |
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| CDS CAA 90 bp | AGCTCTCTTTTTCATTTCAGCATTCACTGCAGCCTGGTTTGCAGTTaGAATGTCCCTGGTTATGGCTTCACGGATTGTAGTGAACTCCTG | + |
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Preference number: 6 (lower is better) Translates to: SSLFHFSIHCSLVCS*NVPGYGFTDCSELL Trigger: CAGGAGTTCACTACAATCCGTGAAGCCATAACCAGGGACATTCAAACTGCAAACCAGGCTGCAGTGAATGCTGAAATGAAAAAGAGAGCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000629221.1 |
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| CDS CAA 72 bp | CTCTCTTTTTCATTTCAGCATTCACTGCAGCCTGGTTaGCAGTTTGAATGTCCCTGGTTATGGCTTCACGGA | + |
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Preference number: 6 (lower is better) Translates to: LSFSFQHSLQPG*QFECPWLWLHG Trigger: TCCGTGAAGCCATAACCAGGGACATTCAAACTGCAAACCAGGCTGCAGTGAATGCTGAAATGAAAAAGAGAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000629221.1 |
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| CDS CAA 72 bp | TTTCATTTCAGCATTCACTGCAGCCTGGTTTGCAGTTaGAATGTCCCTGGTTATGGCTTCACGGATTGTAGT | + |
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Preference number: 6 (lower is better) Translates to: FHFSIHCSLVCS*NVPGYGFTDCS Trigger: ACTACAATCCGTGAAGCCATAACCAGGGACATTCAAACTGCAAACCAGGCTGCAGTGAATGCTGAAATGAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000629221.1 |
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| CDS GCA 72 bp | GACAAGTCTCTTGTATTCGCTGCAGTGGTCTTTGTATaGTGTCTTCTGAAGTCTCTTATTCATTTGAATGTT | + |
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Preference number: 6 (lower is better) Translates to: DKSLVFAAVVFV*CLLKSLIHLNV Trigger: AACATTCAAATGAATAAGAGACTTCAGAAGACAGCATACAAAGACCACTGCAGCGAATACAAGAGACTTGTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000629221.1 |
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| CDS CAA 72 bp | GTCTTTGTATGCTGTCTTCTGAAGTCTCTTATTCATTaGAATGTTCCATGTGTCTCTTCCTTTGAATTTTCT | + |
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Preference number: 6 (lower is better) Translates to: VFVCCLLKSLIH*NVPCVSSFEFS Trigger: AGAAAATTCAAAGGAAGAGACACATGGAACATTCAAATGAATAAGAGACTTCAGAAGACAGCATACAAAGAC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000629221.1 |
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