Pregenerated sensors for LINC00842 (Homo sapiens)
Ensembl gene IDs: ENSG00000285294Ensembl transcript IDs: ENST00000614356.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CACCCAACAGGCTCCTGCACAGCCTTCCGAAGGAACCAACCCTGCTaGCACCTTGACCTTGAACTTGCAGCCTCCAGAACTGTGAGACCA | + |
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Preference number: 5 (lower is better) Translates to: HPTGSCTAFRRNQPC*HLDLELAASRTVRP Trigger: TGGTCTCACAGTTCTGGAGGCTGCAAGTTCAAGGTCAAGGTGTCAGCAGGGTTGGTTCCTTCGGAAGGCTGTGCAGGAGCCTGTTGGGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000614356.1 |
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| CDS GCA 90 bp | GTCCTTGCCCCCTTGTCTCCACATGTTTTGAACTGCACGTTTGTGTaGCTCCAGAATTCCTATGTTGAAACCCTAACCCACAATGGGATG | + |
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Preference number: 5 (lower is better) Translates to: VLAPLSPHVLNCTFV*LQNSYVETLTHNGM Trigger: CATCCCATTGTGGGTTAGGGTTTCAACATAGGAATTCTGGAGGCACACAAACGTGCAGTTCAAAACATGTGGAGACAAGGGGGCAAGGAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000614356.1 |
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| CDS TCA 90 bp | TCTTTCTCTGTCTTTCTGTCTCTCTCTCTCTCTCTCTCTGCCATGTaGAGATACATCAGGGAGATGTCCATCTGCAACCCAGGAAGAGAG | + |
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Preference number: 5 (lower is better) Translates to: SFSVFLSLSLSLSAM*RYIREMSICNPGRE Trigger: CTCTCTTCCTGGGTTGCAGATGGACATCTCCCTGATGTATCTTCACATGGCAGAGAGAGAGAGAGAGAGAGACAGAAAGACAGAGAAAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000614356.1 |
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| CDS TCA 90 bp | ACATGTTTTGAACTGCACGTTTGTGTGCCTCCAGAATTCCTATGTTaGAACCCTAACCCACAATGGGATGGTATGTGGAGATGGAGCCTT | + |
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Preference number: 5 (lower is better) Translates to: TCFELHVCVPPEFLC*NPNPQWDGMWRWSL Trigger: AAGGCTCCATCTCCACATACCATCCCATTGTGGGTTAGGGTTTCAACATAGGAATTCTGGAGGCACACAAACGTGCAGTTCAAAACATGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000614356.1 |
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| CDS TCA 90 bp | CTAACCCACAATGGGATGGTATGTGGAGATGGAGCCTTTGAGAAGTaGTTAGATTTAGTTGAAGTTATGGGGATTCTTCATGACGGGATT | + |
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Preference number: 5 (lower is better) Translates to: LTHNGMVCGDGAFEK*LDLVEVMGILHDGI Trigger: AATCCCGTCATGAAGAATCCCCATAACTTCAACTAAATCTAATCACTTCTCAAAGGCTCCATCTCCACATACCATCCCATTGTGGGTTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000614356.1 |
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| CDS TCA 72 bp | GGCTCCTGCACAGCCTTCCGAAGGAACCAACCCTGCTaGCACCTTGACCTTGAACTTGCAGCCTCCAGAACT | + |
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Preference number: 6 (lower is better) Translates to: GSCTAFRRNQPC*HLDLELAASRT Trigger: AGTTCTGGAGGCTGCAAGTTCAAGGTCAAGGTGTCAGCAGGGTTGGTTCCTTCGGAAGGCTGTGCAGGAGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000614356.1 |
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| CDS CCA 72 bp | ATCGGTTTCCATATTCCCTTGGCAAAGGTTCGTACATaGAGCATTACCTCCCCACACTCTGGGGACACACAG | + |
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Preference number: 6 (lower is better) Translates to: IGFHIPLAKVRT*SITSPHSGDTQ Trigger: CTGTGTGTCCCCAGAGTGTGGGGAGGTAATGCTCCATGTACGAACCTTTGCCAAGGGAATATGGAAACCGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000614356.1 |
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| CDS CAA 72 bp | TTCTGTCGTTTTAGCCGCTCTGCCTGTAACGCTTTGTaGTGGCAACCCCAGGAAACTAACAGAGGAGGTGAG | + |
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Preference number: 6 (lower is better) Translates to: FCRFSRSACNAL*WQPQETNRGGE Trigger: CTCACCTCCTCTGTTAGTTTCCTGGGGTTGCCACAACAAAGCGTTACAGGCAGAGCGGCTAAAACGACAGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000614356.1 |
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| CDS CAA 90 bp | GAGACCATAAGTTTCTGTCGTTTTAGCCGCTCTGCCTGTAACGCTTaGTTGTGGCAACCCCAGGAAACTAACAGAGGAGGTGAGATTGGG | + |
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Preference number: 6 (lower is better) Translates to: ETISFCRFSRSACNA*LWQPQETNRGGEIG Trigger: CCCAATCTCACCTCCTCTGTTAGTTTCCTGGGGTTGCCACAACAAAGCGTTACAGGCAGAGCGGCTAAAACGACAGAAACTTATGGTCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000614356.1 |
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| CDS CAA 72 bp | AGTTTCTGTCGTTTTAGCCGCTCTGCCTGTAACGCTTaGTTGTGGCAACCCCAGGAAACTAACAGAGGAGGT | + |
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Preference number: 6 (lower is better) Translates to: SFCRFSRSACNA*LWQPQETNRGG Trigger: ACCTCCTCTGTTAGTTTCCTGGGGTTGCCACAACAAAGCGTTACAGGCAGAGCGGCTAAAACGACAGAAACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000614356.1 |
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| CDS CAA 72 bp | AGAGGTAAGAACTCATCCATCGGTTTCCATATTCCCTaGGCAAAGGTTCGTACATGGAGCATTACCTCCCCA | + |
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Preference number: 6 (lower is better) Translates to: RGKNSSIGFHIP*AKVRTWSITSP Trigger: TGGGGAGGTAATGCTCCATGTACGAACCTTTGCCAAGGGAATATGGAAACCGATGGATGAGTTCTTACCTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000614356.1 |
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| CDS TCA 72 bp | AATGGGATGGTATGTGGAGATGGAGCCTTTGAGAAGTaGTTAGATTTAGTTGAAGTTATGGGGATTCTTCAT | + |
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Preference number: 6 (lower is better) Translates to: NGMVCGDGAFEK*LDLVEVMGILH Trigger: ATGAAGAATCCCCATAACTTCAACTAAATCTAATCACTTCTCAAAGGCTCCATCTCCACATACCATCCCATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000614356.1 |
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