Pregenerated sensors for LINC00839 (Homo sapiens)
Ensembl gene IDs: ENSG00000185904Ensembl transcript IDs: ENST00000424751.3, ENST00000429940.7, ENST00000653292.1, ENST00000659650.1, ENST00000662209.1, ENST00000668072.1, ENST00000670679.1
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TTTGAGCCCCTTGTTGGACGCCACTTGATGAGACCAGCTCGGTCGTaGAGACCCCAACCCAGTAGTGCCTCGGCTGGGTTGCCGTCTTCT | + |
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Preference number: 5 (lower is better) Translates to: FEPLVGRHLMRPARS*RPQPSSASAGLPSS Trigger: AGAAGACGGCAACCCAGCCGAGGCACTACTGGGTTGGGGTCTCCACGACCGAGCTGGTCTCATCAAGTGGCGTCCAACAAGGGGCTCAAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 7 transcripts: ENST00000424751.3 ENST00000429940.7 ENST00000653292.1 ENST00000659650.1 ENST00000662209.1 ENST00000668072.1 ENST00000670679.1 |
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| CDS GCA 90 bp | CTACCCACAGGCTCCACAAGGCTGATTTCAGGACCTGGGCATACATaGATATGTGCCGAGACCAGCTTGGTCAAGGAGACCCCAACCCAG | + |
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Preference number: 5 (lower is better) Translates to: LPTGSTRLISGPGHT*ICAETSLVKETPTQ Trigger: CTGGGTTGGGGTCTCCTTGACCAAGCTGGTCTCGGCACATATGCATGTATGCCCAGGTCCTGAAATCAGCCTTGTGGAGCCTGTGGGTAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000424751.3 ENST00000429940.7 ENST00000653292.1 ENST00000659650.1 ENST00000668072.1 ENST00000670679.1 |
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| CDS GCA 90 bp | AGGCTCCACAAGGCTGATTTCAGGACCTGGGCATACATGCATATGTaGCGAGACCAGCTTGGTCAAGGAGACCCCAACCCAGTGGTGCTA | + |
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Preference number: 5 (lower is better) Translates to: RLHKADFRTWAYMHM*RDQLGQGDPNPVVL Trigger: TAGCACCACTGGGTTGGGGTCTCCTTGACCAAGCTGGTCTCGGCACATATGCATGTATGCCCAGGTCCTGAAATCAGCCTTGTGGAGCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000424751.3 ENST00000429940.7 ENST00000653292.1 ENST00000659650.1 ENST00000668072.1 ENST00000670679.1 |
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| CDS TCA 90 bp | AACATGTTGTTAAGGCTCAGGCCACTCATGCTGTTGTTTGTGGTTTaGGCAGTTTTCCGCTCCGGGTGGGCCAGGTGTTCCCTACCCTGC | + |
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Preference number: 5 (lower is better) Translates to: NMLLRLRPLMLLFVV*AVFRSGWARCSLPC Trigger: GCAGGGTAGGGAACACCTGGCCCACCCGGAGCGGAAAACTGCTCAAACCACAAACAACAGCATGAGTGGCCTGAGCCTTAACAACATGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000424751.3 ENST00000429940.7 ENST00000653292.1 ENST00000659650.1 ENST00000668072.1 ENST00000670679.1 |
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| CDS TCA 90 bp | CATGCACAGAGGGTTGACTTTTCCTACCCACAGGCTCCACAAGGCTaGTTTCAGGACCTGGGCATACATGCATATGTGCCGAGACCAGCT | + |
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Preference number: 5 (lower is better) Translates to: HAQRVDFSYPQAPQG*FQDLGIHAYVPRPA Trigger: AGCTGGTCTCGGCACATATGCATGTATGCCCAGGTCCTGAAATCAGCCTTGTGGAGCCTGTGGGTAGGAAAAGTCAACCCTCTGTGCATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000424751.3 ENST00000429940.7 ENST00000653292.1 ENST00000659650.1 ENST00000668072.1 ENST00000670679.1 |
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| CDS TCA 90 bp | GACCAGCTTGGTCAAGGAGACCCCAACCCAGTGGTGCTAGAGGAATaGAGACAAACACACAGAAATAAAGTGCAAAGTGGGAATCAGGGG | + |
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Preference number: 5 (lower is better) Translates to: DQLGQGDPNPVVLEE*RQTHRNKVQSGNQG Trigger: CCCCTGATTCCCACTTTGCACTTTATTTCTGTGTGTTTGTCTTCATTCCTCTAGCACCACTGGGTTGGGGTCTCCTTGACCAAGCTGGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000424751.3 ENST00000429940.7 ENST00000653292.1 ENST00000659650.1 ENST00000668072.1 ENST00000670679.1 |
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| CDS CCA 90 bp | ACAGATCACTCATGCTATTGTTTGTGGCTTAAGAATGCCTTTAAGTaGTTTTCCACCCTGGGCAGGCCAGGTGTTCCTTGCCCTCATTCC | + |
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Preference number: 5 (lower is better) Translates to: TDHSCYCLWLKNAFK*FSTLGRPGVPCPHS Trigger: GGAATGAGGGCAAGGAACACCTGGCCTGCCCAGGGTGGAAAACCACTTAAAGGCATTCTTAAGCCACAAACAATAGCATGAGTGATCTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000424751.3 ENST00000429940.7 ENST00000653292.1 ENST00000659650.1 ENST00000668072.1 ENST00000670679.1 |
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| CDS CCA 90 bp | GCTATTGTTTGTGGCTTAAGAATGCCTTTAAGTGGTTTTCCACCCTaGGCAGGCCAGGTGTTCCTTGCCCTCATTCCTGTAAATCCACAA | + |
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Preference number: 5 (lower is better) Translates to: AIVCGLRMPLSGFPP*AGQVFLALIPVNPQ Trigger: TTGTGGATTTACAGGAATGAGGGCAAGGAACACCTGGCCTGCCCAGGGTGGAAAACCACTTAAAGGCATTCTTAAGCCACAAACAATAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000424751.3 ENST00000429940.7 ENST00000653292.1 ENST00000659650.1 ENST00000668072.1 ENST00000670679.1 |
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| CDS TCA 90 bp | GGTCCTTGGGTTCTTCCCAAAATCTCTTCCTCAGTATCTGGCTCATaGCAAGATTTCAGGTGTCTTGATGGTATCCAAATCAGTTGCTGG | + |
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Preference number: 5 (lower is better) Translates to: GPWVLPKISSSVSGS*QDFRCLDGIQISCW Trigger: CCAGCAACTGATTTGGATACCATCAAGACACCTGAAATCTTGTCATGAGCCAGATACTGAGGAAGAGATTTTGGGAAGAACCCAAGGACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000424751.3 ENST00000429940.7 ENST00000659650.1 ENST00000668072.1 ENST00000670679.1 |
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| CDS GCA 90 bp | CTTCGTCATGGTGGGCTACTTCTCGCAGGATTCGGGATCCACATCTaGAGACTACACAAAGACAAACAATACAGATTAAAGGCACAATCA | + |
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Preference number: 5 (lower is better) Translates to: LRHGGLLLAGFGIHI*RLHKDKQYRLKAQS Trigger: TGATTGTGCCTTTAATCTGTATTGTTTGTCTTTGTGTAGTCTGCAGATGTGGATCCCGAATCCTGCGAGAAGTAGCCCACCATGACGAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000659650.1 ENST00000670679.1 |
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| CDS GCA 90 bp | ATTTCTACTGTAGGGTTGATCCTGGAACAATCTGGGCCTGAACTGTaGAGGTCCACTTACAGAGGATTTTTAAAAACAAATGCAGTAGGT | + |
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Preference number: 5 (lower is better) Translates to: ISTVGLILEQSGPEL*RSTYRGFLKTNAVG Trigger: ACCTACTGCATTTGTTTTTAAAAATCCTCTGTAAGTGGACCTGCACAGTTCAGGCCCAGATTGTTCCAGGATCAACCCTACAGTAGAAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 6 transcripts: ENST00000424751.3 ENST00000429940.7 ENST00000653292.1 ENST00000659650.1 ENST00000668072.1 ENST00000670679.1 |
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| CDS GCA 90 bp | CTGGGAGGTAAGCACCTGTTGGCTTTTCCCAAGCAAGTAGTTAAATaGTCAAATCCCAACGAAATATTCATAATTGTTCCCTCCTTTTGG | + |
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Preference number: 5 (lower is better) Translates to: LGGKHLLAFPKQVVK*SNPNEIFIIVPSFW Trigger: CCAAAAGGAGGGAACAATTATGAATATTTCGTTGGGATTTGAGCATTTAACTACTTGCTTGGGAAAAGCCAACAGGTGCTTACCTCCCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000659650.1 ENST00000670679.1 |
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| CDS TCA 90 bp | ATACTTGATTTCTACTGTAGGGTTGATCCTGGAACAATCTGGGCCTaGACTGTGCAGGTCCACTTACAGAGGATTTTTAAAAACAAATGC | + |
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Preference number: 5 (lower is better) Translates to: ILDFYCRVDPGTIWA*TVQVHLQRIFKNKC Trigger: GCATTTGTTTTTAAAAATCCTCTGTAAGTGGACCTGCACAGTTCAGGCCCAGATTGTTCCAGGATCAACCCTACAGTAGAAATCAAGTAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 6 transcripts: ENST00000424751.3 ENST00000429940.7 ENST00000653292.1 ENST00000659650.1 ENST00000668072.1 ENST00000670679.1 |
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| CDS TCA 90 bp | TTCTCAATCAGCTGTATCTCTGCCTCAGTCTCTGTTGTTAATTGCTaGGGGCTAGTGAGACTAGGATTTCCTGTAAGGATAGAAAATAGA | + |
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Preference number: 5 (lower is better) Translates to: FSISCISASVSVVNC*GLVRLGFPVRIENR Trigger: TCTATTTTCTATCCTTACAGGAAATCCTAGTCTCACTAGCCCTCAGCAATTAACAACAGAGACTGAGGCAGAGATACAGCTGATTGAGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000662209.1 |
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| CDS GCA 90 bp | ATTCCACAGCAAAGTAGAATTTTTCTGCCAATTATTTACATAATCTaGTGTTTGTACTGTGTTGGTAAAGCAACTCCAGCTACCGTGGCA | + |
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Preference number: 5 (lower is better) Translates to: IPQQSRIFLPIIYII*CLYCVGKATPATVA Trigger: TGCCACGGTAGCTGGAGTTGCTTTACCAACACAGTACAAACAGCAGATTATGTAAATAATTGGCAGAAAAATTCTACTTTGCTGTGGAAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000659650.1 ENST00000670679.1 |
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| CDS TCA 90 bp | ACAGGTATCCATACTCCTTCTCGGGCTCTTACCACTAAGATAGAATaGTCAGTATTATACAAGGAAGAATTCACACAAGAAAACAATCTA | + |
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Preference number: 5 (lower is better) Translates to: TGIHTPSRALTTKIE*SVLYKEEFTQENNL Trigger: TAGATTGTTTTCTTGTGTGAATTCTTCCTTGTATAATACTGATCATTCTATCTTAGTGGTAAGAGCCCGAGAAGGAGTATGGATACCTGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000659650.1 ENST00000670679.1 |
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| CDS GCA 90 bp | ATGGGTTTGCCAATTAAGAGTATTTATAAAGGCCTGTTGTATTTGTaGCTTTGTAAGAGGGACAATAATTTTTCCAGGGTCATATCCATG | + |
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Preference number: 5 (lower is better) Translates to: MGLPIKSIYKGLLYL*LCKRDNNFSRVISM Trigger: CATGGATATGACCCTGGAAAAATTATTGTCCCTCTTACAAAGGCACAAATACAACAGGCCTTTATAAATACTCTTAATTGGCAAACCCAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000662209.1 |
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| CDS CCA 72 bp | GACCTGGGCATACATGCATATGTGCCGAGACCAGCTTaGTCAAGGAGACCCCAACCCAGTGGTGCTAGAGGA | + |
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Preference number: 6 (lower is better) Translates to: DLGIHAYVPRPA*SRRPQPSGARG Trigger: TCCTCTAGCACCACTGGGTTGGGGTCTCCTTGACCAAGCTGGTCTCGGCACATATGCATGTATGCCCAGGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000424751.3 ENST00000429940.7 ENST00000653292.1 ENST00000659650.1 ENST00000668072.1 ENST00000670679.1 |
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| CDS GCA 72 bp | GGCTCCACAAGGCTGATTTCAGGACCTGGGCATACATaGATATGTGCCGAGACCAGCTTGGTCAAGGAGACC | + |
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Preference number: 6 (lower is better) Translates to: GSTRLISGPGHT*ICAETSLVKET Trigger: GGTCTCCTTGACCAAGCTGGTCTCGGCACATATGCATGTATGCCCAGGTCCTGAAATCAGCCTTGTGGAGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000424751.3 ENST00000429940.7 ENST00000653292.1 ENST00000659650.1 ENST00000668072.1 ENST00000670679.1 |
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| CDS CAA 72 bp | GTTAAGGCTCAGGCCACTCATGCTGTTGTTTGTGGTTaGAGCAGTTTTCCGCTCCGGGTGGGCCAGGTGTTC | + |
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Preference number: 6 (lower is better) Translates to: VKAQATHAVVCG*SSFPLRVGQVF Trigger: GAACACCTGGCCCACCCGGAGCGGAAAACTGCTCAAACCACAAACAACAGCATGAGTGGCCTGAGCCTTAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000424751.3 ENST00000429940.7 ENST00000653292.1 ENST00000659650.1 ENST00000668072.1 ENST00000670679.1 |
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| CDS GCA 72 bp | AAGGCTGATTTCAGGACCTGGGCATACATGCATATGTaGCGAGACCAGCTTGGTCAAGGAGACCCCAACCCA | + |
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Preference number: 6 (lower is better) Translates to: KADFRTWAYMHM*RDQLGQGDPNP Trigger: TGGGTTGGGGTCTCCTTGACCAAGCTGGTCTCGGCACATATGCATGTATGCCCAGGTCCTGAAATCAGCCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000424751.3 ENST00000429940.7 ENST00000653292.1 ENST00000659650.1 ENST00000668072.1 ENST00000670679.1 |
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| CDS CAA 90 bp | AAACATGTTGTTAAGGCTCAGGCCACTCATGCTGTTGTTTGTGGTTaGAGCAGTTTTCCGCTCCGGGTGGGCCAGGTGTTCCCTACCCTG | + |
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Preference number: 6 (lower is better) Translates to: KHVVKAQATHAVVCG*SSFPLRVGQVFPTL Trigger: CAGGGTAGGGAACACCTGGCCCACCCGGAGCGGAAAACTGCTCAAACCACAAACAACAGCATGAGTGGCCTGAGCCTTAACAACATGTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000424751.3 ENST00000429940.7 ENST00000653292.1 ENST00000659650.1 ENST00000668072.1 ENST00000670679.1 |
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| CDS TCA 72 bp | AGGGTTGACTTTTCCTACCCACAGGCTCCACAAGGCTaGTTTCAGGACCTGGGCATACATGCATATGTGCCG | + |
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Preference number: 6 (lower is better) Translates to: RVDFSYPQAPQG*FQDLGIHAYVP Trigger: CGGCACATATGCATGTATGCCCAGGTCCTGAAATCAGCCTTGTGGAGCCTGTGGGTAGGAAAAGTCAACCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000424751.3 ENST00000429940.7 ENST00000653292.1 ENST00000659650.1 ENST00000668072.1 ENST00000670679.1 |
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| CDS CCA 72 bp | TGTGGCTTAAGAATGCCTTTAAGTGGTTTTCCACCCTaGGCAGGCCAGGTGTTCCTTGCCCTCATTCCTGTA | + |
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Preference number: 6 (lower is better) Translates to: CGLRMPLSGFPP*AGQVFLALIPV Trigger: TACAGGAATGAGGGCAAGGAACACCTGGCCTGCCCAGGGTGGAAAACCACTTAAAGGCATTCTTAAGCCACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000424751.3 ENST00000429940.7 ENST00000653292.1 ENST00000659650.1 ENST00000668072.1 ENST00000670679.1 |
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| CDS CAA 72 bp | ATAAAGTGCAAAGTGGGAATCAGGGGGAAAACAGCCTaGAGAGCTGAGAGCCACAAACAGAGTTTGACCCAC | + |
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Preference number: 6 (lower is better) Translates to: IKCKVGIRGKTA*RAESHKQSLTH Trigger: GTGGGTCAAACTCTGTTTGTGGCTCTCAGCTCTCAAGGCTGTTTTCCCCCTGATTCCCACTTTGCACTTTAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENST00000424751.3 ENST00000429940.7 ENST00000653292.1 ENST00000659650.1 ENST00000668072.1 ENST00000670679.1 |
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| CDS TCA 72 bp | CAAAGTGGGAATCAGGGGGAAAACAGCCTTGAGAGCTaGGAGCCACAAACAGAGTTTGACCCACATGTTTAT | + |
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Preference number: 6 (lower is better) Translates to: QSGNQGENSLES*EPQTEFDPHVY Trigger: ATAAACATGTGGGTCAAACTCTGTTTGTGGCTCTCAGCTCTCAAGGCTGTTTTCCCCCTGATTCCCACTTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENST00000424751.3 ENST00000429940.7 ENST00000653292.1 ENST00000659650.1 ENST00000668072.1 ENST00000670679.1 |
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| CDS TCA 72 bp | CAAGTGGGAAATCAGGGGTCTCACAGCCTTCAGAGTTaGGAGCCCCAAACAGAGATTTACCCACGTATTTAT | + |
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Preference number: 6 (lower is better) Translates to: QVGNQGSHSLQS*EPQTEIYPRIY Trigger: ATAAATACGTGGGTAAATCTCTGTTTGGGGCTCTCAACTCTGAAGGCTGTGAGACCCCTGATTTCCCACTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENST00000424751.3 ENST00000429940.7 ENST00000653292.1 ENST00000659650.1 ENST00000668072.1 |
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| CDS TCA 72 bp | CAACCTGGGCTGCAATGCCCCAGTAGGTTGTATAACTaGATTAACGGCTCTAAGATCTGCCAACATTCTCCA | + |
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Preference number: 6 (lower is better) Translates to: QPGLQCPSRLYN*INGSKICQHSP Trigger: TGGAGAATGTTGGCAGATCTTAGAGCCGTTAATTCAGTTATACAACCTACTGGGGCATTGCAGCCCAGGTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000662209.1 |
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| CDS TCA 72 bp | ACAAAGTCTCCAAGTGTCTTGATCCACTTGTATGGGTaGATAGCTGCTAATCCATCTGCAGCTCCTTCAAGC | + |
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Preference number: 6 (lower is better) Translates to: TKSPSVLIHLYG*IAANPSAAPSS Trigger: GCTTGAAGGAGCTGCAGATGGATTAGCAGCTATTCACCCATACAAGTGGATCAAGACACTTGGAGACTTTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000659650.1 ENST00000670679.1 |
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| CDS CAA 72 bp | TGGTATCCAAATCAGTTGCTGGTTTTGGCCAAGGGATaGCTTAAGAGTACTCTGGTGTCCTCCAGTGTAGTT | + |
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Preference number: 6 (lower is better) Translates to: WYPNQLLVLAKG*LKSTLVSSSVV Trigger: AACTACACTGGAGGACACCAGAGTACTCTTAAGCAATCCCTTGGCCAAAACCAGCAACTGATTTGGATACCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000424751.3 ENST00000429940.7 ENST00000659650.1 ENST00000668072.1 ENST00000670679.1 |
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| CDS CAA 72 bp | AACAGTCTCTGGCCGATTATCTGCAGCAAAAACATGTaGTTAAGGCTCAGGCCACTCATGCTGTTGTTTGTG | + |
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Preference number: 6 (lower is better) Translates to: NSLWPIICSKNM*LRLRPLMLLFV Trigger: CACAAACAACAGCATGAGTGGCCTGAGCCTTAACAACATGTTTTTGCTGCAGATAATCGGCCAGAGACTGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENST00000424751.3 ENST00000429940.7 ENST00000653292.1 ENST00000659650.1 ENST00000668072.1 ENST00000670679.1 |
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| CDS TCA 72 bp | TTCTACTGTAGGGTTGATCCTGGAACAATCTGGGCCTaGACTGTGCAGGTCCACTTACAGAGGATTTTTAAA | + |
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Preference number: 6 (lower is better) Translates to: FYCRVDPGTIWA*TVQVHLQRIFK Trigger: TTTAAAAATCCTCTGTAAGTGGACCTGCACAGTTCAGGCCCAGATTGTTCCAGGATCAACCCTACAGTAGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENST00000424751.3 ENST00000429940.7 ENST00000653292.1 ENST00000659650.1 ENST00000668072.1 ENST00000670679.1 |
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| CDS TCA 72 bp | AGCTGTATCTCTGCCTCAGTCTCTGTTGTTAATTGCTaGGGGCTAGTGAGACTAGGATTTCCTGTAAGGATA | + |
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Preference number: 6 (lower is better) Translates to: SCISASVSVVNC*GLVRLGFPVRI Trigger: TATCCTTACAGGAAATCCTAGTCTCACTAGCCCTCAGCAATTAACAACAGAGACTGAGGCAGAGATACAGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000662209.1 |
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| CDS TCA 72 bp | TGCCCCTTTAGGGGACCAATCAATAGTGACTCCATATaGATCATTACACAACACCTTTGCTTGCCCTGCAAT | + |
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Preference number: 6 (lower is better) Translates to: CPFRGPINSDSI*IITQHLCLPCN Trigger: ATTGCAGGGCAAGCAAAGGTGTTGTGTAATGATTCATATGGAGTCACTATTGATTGGTCCCCTAAAGGGGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000659650.1 ENST00000670679.1 |
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| CDS CAA 72 bp | CCTCAGTATCTGGCTCATGACAAGATTTCAGGTGTCTaGATGGTATCCAAATCAGTTGCTGGTTTTGGCCAA | + |
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Preference number: 6 (lower is better) Translates to: PQYLAHDKISGV*MVSKSVAGFGQ Trigger: TTGGCCAAAACCAGCAACTGATTTGGATACCATCAAGACACCTGAAATCTTGTCATGAGCCAGATACTGAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000424751.3 ENST00000429940.7 ENST00000659650.1 ENST00000668072.1 ENST00000670679.1 |
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| CDS CAA 90 bp | AAATCTCTTCCTCAGTATCTGGCTCATGACAAGATTTCAGGTGTCTaGATGGTATCCAAATCAGTTGCTGGTTTTGGCCAAGGGATTGCT | + |
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Preference number: 6 (lower is better) Translates to: KSLPQYLAHDKISGV*MVSKSVAGFGQGIA Trigger: AGCAATCCCTTGGCCAAAACCAGCAACTGATTTGGATACCATCAAGACACCTGAAATCTTGTCATGAGCCAGATACTGAGGAAGAGATTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000424751.3 ENST00000429940.7 ENST00000659650.1 ENST00000668072.1 ENST00000670679.1 |
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| CDS TCA 72 bp | AACGAAATATTCATAATTGTTCCCTCCTTTTGGGGGTaGGATGGGCCTCTATCATCTGTAGAACCAGGTATC | + |
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Preference number: 6 (lower is better) Translates to: NEIFIIVPSFWG*DGPLSSVEPGI Trigger: GATACCTGGTTCTACAGATGATAGAGGCCCATCTCACCCCCAAAAGGAGGGAACAATTATGAATATTTCGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000659650.1 ENST00000670679.1 |
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| CDS GCA 72 bp | GTAGGGTTGATCCTGGAACAATCTGGGCCTGAACTGTaGAGGTCCACTTACAGAGGATTTTTAAAAACAAAT | + |
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Preference number: 6 (lower is better) Translates to: VGLILEQSGPEL*RSTYRGFLKTN Trigger: ATTTGTTTTTAAAAATCCTCTGTAAGTGGACCTGCACAGTTCAGGCCCAGATTGTTCCAGGATCAACCCTAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 6 transcripts: ENST00000424751.3 ENST00000429940.7 ENST00000653292.1 ENST00000659650.1 ENST00000668072.1 ENST00000670679.1 |
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| CDS GCA 72 bp | TGGACTGAATTAAAGGAATATGTTGGGCTAGTTAACTaGAGCAGGAGCATGTTCTTAAGGCACAGATCACTC | + |
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Preference number: 6 (lower is better) Translates to: WTELKEYVGLVN*SRSMFLRHRSL Trigger: GAGTGATCTGTGCCTTAAGAACATGCTCCTGCTGCAGTTAACTAGCCCAACATATTCCTTTAATTCAGTCCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000424751.3 ENST00000429940.7 ENST00000653292.1 ENST00000659650.1 ENST00000668072.1 ENST00000670679.1 |
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| CDS CAA 72 bp | AAATCCCAACGAAATATTCATAATTGTTCCCTCCTTTaGGGGGTGAGATGGGCCTCTATCATCTGTAGAACC | + |
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Preference number: 6 (lower is better) Translates to: KSQRNIHNCSLL*GVRWASIICRT Trigger: GGTTCTACAGATGATAGAGGCCCATCTCACCCCCAAAAGGAGGGAACAATTATGAATATTTCGTTGGGATTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000659650.1 ENST00000670679.1 |
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| CDS GCA 72 bp | ACCATTACCTACAGATTGAGAAGTGAGCCTTATAAATaGCCCTTTAGGGGACCAATCAATAGTGACTCCATA | + |
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Preference number: 6 (lower is better) Translates to: TITYRLRSEPYK*PFRGPINSDSI Trigger: TATGGAGTCACTATTGATTGGTCCCCTAAAGGGGCATTTATAAGGCTCACTTCTCAATCTGTAGGTAATGGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000659650.1 ENST00000670679.1 |
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| CDS TCA 72 bp | ATCCACAACCTTCCAACTTGGGCGTTATGGCCATTATaGACATGTTATAGTGCTGCAGAGATTTTGTTTATG | + |
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Preference number: 6 (lower is better) Translates to: IHNLPTWALWPL*TCYSAAEILFM Trigger: CATAAACAAAATCTCTGCAGCACTATAACATGTTCATAATGGCCATAACGCCCAAGTTGGAAGGTTGTGGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000424751.3 ENST00000429940.7 ENST00000653292.1 ENST00000659650.1 ENST00000668072.1 ENST00000670679.1 |
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| CDS TCA 72 bp | TCCTGCTCTTGGACAACACCACCAGTAGGTGAATGCTaGGTTGGAAAAATCAATAAGTCTAAAGTCTTTTCT | + |
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Preference number: 6 (lower is better) Translates to: SCSWTTPPVGEC*VGKINKSKVFS Trigger: AGAAAAGACTTTAGACTTATTGATTTTTCCAACTCAGCATTCACCTACTGGTGGTGTTGTCCAAGAGCAGGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000662209.1 |
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| CDS GCA 72 bp | GTGACTCCATATGAATCATTACACAACACCTTTGCTTaGCCTGCAATACAATCTTCCCAAGTAAATATCTTC | + |
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Preference number: 6 (lower is better) Translates to: VTPYESLHNTFA*PAIQSSQVNIF Trigger: GAAGATATTTACTTGGGAAGATTGTATTGCAGGGCAAGCAAAGGTGTTGTGTAATGATTCATATGGAGTCAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000659650.1 ENST00000670679.1 |
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| CDS CCA 72 bp | GCAAGTGATCATAACATTGGAGTAATATTTCCCGAGTaGGGGCAGCACAAAGAATATTGTCCATATAATGAA | + |
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Preference number: 6 (lower is better) Translates to: ASDHNIGVIFPE*GQHKEYCPYNE Trigger: TTCATTATATGGACAATATTCTTTGTGCTGCCCCCACTCGGGAAATATTACTCCAATGTTATGATCACTTGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000662209.1 |
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| CDS CAA 72 bp | AGGTACAGAAGTTACAATTGGTTGAATAGTCCCAGATaGTCCATCGAGTCCTTCATGATGCAAAATATCACT | + |
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Preference number: 6 (lower is better) Translates to: RYRSYNWLNSPR*SIESFMMQNIT Trigger: AGTGATATTTTGCATCATGAAGGACTCGATGGACAATCTGGGACTATTCAACCAATTGTAACTTCTGTACCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000662209.1 |
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| CDS TCA 72 bp | CATACTCCTTCTCGGGCTCTTACCACTAAGATAGAATaGTCAGTATTATACAAGGAAGAATTCACACAAGAA | + |
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Preference number: 6 (lower is better) Translates to: HTPSRALTTKIE*SVLYKEEFTQE Trigger: TTCTTGTGTGAATTCTTCCTTGTATAATACTGATCATTCTATCTTAGTGGTAAGAGCCCGAGAAGGAGTATG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000659650.1 ENST00000670679.1 |
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| CDS GCA 72 bp | TTTTATAGTGTCTACCATCTGATCATTTTCTTTAGATaGAGGGTGACCATTACCTACAGATTGAGAAGTGAG | + |
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Preference number: 6 (lower is better) Translates to: FYSVYHLIIFFR*RVTITYRLRSE Trigger: CTCACTTCTCAATCTGTAGGTAATGGTCACCCTGCATCTAAAGAAAATGATCAGATGGTAGACACTATAAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000659650.1 ENST00000670679.1 |
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| CDS CAA 72 bp | GTGCCTGAGAGGCTTGAAATATGTGTTCCTTCAGTTTaGCAATATCCAAAGATAAATTTCCAGTATGATCCT | + |
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Preference number: 6 (lower is better) Translates to: VPERLEICVPSV*QYPKINFQYDP Trigger: AGGATCATACTGGAAATTTATCTTTGGATATTGCAAAACTGAAGGAACACATATTTCAAGCCTCTCAGGCAC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000659650.1 ENST00000670679.1 |
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| CDS TCA 72 bp | CCCAACCATACGATAGTTTGTCGGAGATCATTAATCTaGTTGGTTAATTTCTGGTGTATATTAGTTTGGGAA | + |
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Preference number: 6 (lower is better) Translates to: PNHTIVCRRSLI*LVNFWCILVWE Trigger: TTCCCAAACTAATATACACCAGAAATTAACCAATCAGATTAATGATCTCCGACAAACTATCGTATGGTTGGG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000659650.1 ENST00000670679.1 |
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| CDS GCA 72 bp | CCAATTAAGAGTATTTATAAAGGCCTGTTGTATTTGTaGCTTTGTAAGAGGGACAATAATTTTTCCAGGGTC | + |
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Preference number: 6 (lower is better) Translates to: PIKSIYKGLLYL*LCKRDNNFSRV Trigger: GACCCTGGAAAAATTATTGTCCCTCTTACAAAGGCACAAATACAACAGGCCTTTATAAATACTCTTAATTGG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000662209.1 |
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| CDS CAA 72 bp | AATTTTTCCAGGGTCATATCCATGCAATTTAACAATTaGAGTTCTCCCATTTCCTATCAGAGTAGCAATTTG | + |
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Preference number: 6 (lower is better) Translates to: NFSRVISMQFNN*SSPISYQSSNL Trigger: CAAATTGCTACTCTGATAGGAAATGGGAGAACTCAAATTGTTAAATTGCATGGATATGACCCTGGAAAAATT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000662209.1 |
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| CDS CAA 72 bp | TTGCCAATTAAGAGTATTTATAAAGGCCTGTTGTATTaGTGCCTTTGTAAGAGGGACAATAATTTTTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: LPIKSIYKGLLY*CLCKRDNNFSR Trigger: CCTGGAAAAATTATTGTCCCTCTTACAAAGGCACAAATACAACAGGCCTTTATAAATACTCTTAATTGGCAA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000662209.1 |
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