Pregenerated sensors for LINC00837 (Homo sapiens)
Ensembl gene IDs: ENSG00000235824Ensembl transcript IDs: ENST00000443246.2, ENST00000446012.1, ENST00000608061.1, ENST00000622423.1, ENST00000656822.1, ENST00000657525.1, ENST00000658979.1
Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GGGGGAGGCCGTCCTGTGCATTACAGGATGTTCAGCAGCATCCTTTaGTTCAACCCATGGATGTCAGTAGCACTTCCCTCCCTCCTCCCC | + |
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Preference number: 5 (lower is better) Translates to: GGGRPVHYRMFSSIL*FNPWMSVALPSLLP Trigger: GGGGAGGAGGGAGGGAAGTGCTACTGACATCCATGGGTTGAAGCAAAGGATGCTGCTGAACATCCTGTAATGCACAGGACGGCCTCCCCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000658979.1 |
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| CDS TCA 90 bp | CGAACTGGAGTAGGCGAGTGGCTTCCCTGGTGGCTCACGCTCTGCTaGGCACCCTTCATCTGCACCAGGAAAGACGACATGGAAAATGAG | + |
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Preference number: 5 (lower is better) Translates to: RTGVGEWLPWWLTLC*APFICTRKDDMENE Trigger: CTCATTTTCCATGTCGTCTTTCCTGGTGCAGATGAAGGGTGCTCAGCAGAGCGTGAGCCACCAGGGAAGCCACTCGCCTACTCCAGTTCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000443246.2 ENST00000657525.1 |
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| CDS GCA 90 bp | GTCATTCACGACCTGGTCCTAGGCCACCTTTCCCGTCTCATTTCTTaGCTCTCCTGTACCTTCGTGAACGTGCCATGTACCTTAGCGCTG | + |
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Preference number: 5 (lower is better) Translates to: VIHDLVLGHLSRLIS*LSCTFVNVPCTLAL Trigger: CAGCGCTAAGGTACATGGCACGTTCACGAAGGTACAGGAGAGGCAAGAAATGAGACGGGAAAGGTGGCCTAGGACCAGGTCGTGAATGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000656822.1 ENST00000658979.1 |
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| CDS GCA 90 bp | CCCATAGACAAACGGGTGTTGGCTCAGACACAACTGGTTTGTTTTTaGTCACCTAACAGCGCTCTTTGGTTGAACGCGCTAATGAAACGG | + |
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Preference number: 5 (lower is better) Translates to: PIDKRVLAQTQLVCF*SPNSALWLNALMKR Trigger: CCGTTTCATTAGCGCGTTCAACCAAAGAGCGCTGTTAGGTGAGCAAAAACAAACCAGTTGTGTCTGAGCCAACACCCGTTTGTCTATGGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000443246.2 ENST00000608061.1 ENST00000656822.1 ENST00000658979.1 |
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| CDS CCA 90 bp | GCTCAGACACAACTGGTTTGTTTTTGCTCACCTAACAGCGCTCTTTaGTTGAACGCGCTAATGAAACGGACCCCTTCCTACTCTTTCAGC | + |
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Preference number: 5 (lower is better) Translates to: AQTQLVCFCSPNSAL*LNALMKRTPSYSFS Trigger: GCTGAAAGAGTAGGAAGGGGTCCGTTTCATTAGCGCGTTCAACCAAAGAGCGCTGTTAGGTGAGCAAAAACAAACCAGTTGTGTCTGAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000443246.2 ENST00000608061.1 ENST00000656822.1 ENST00000658979.1 |
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| CDS TCA 90 bp | TCCCTCCTCCCCTTGGTGAAGACAACCAAATATGTCTCTAGACTTTaGCAAATGTTCCCTGGAAGGCAAAATTGCCGCTGGTTGAGAACC | + |
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Preference number: 5 (lower is better) Translates to: SLLPLVKTTKYVSRL*QMFPGRQNCRWLRT Trigger: GGTTCTCAACCAGCGGCAATTTTGCCTTCCAGGGAACATTTGTCAAAGTCTAGAGACATATTTGGTTGTCTTCACCAAGGGGAGGAGGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000658979.1 |
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| CDS CCA 90 bp | GGCCCGAGACTCTACCAACTTCAAAAACTGTTTCCAAGATGGCCCTaGGGATCATCTCCATTTTACCTAATGAAAGGAGAAAGGACATTG | + |
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Preference number: 5 (lower is better) Translates to: GPRLYQLQKLFPRWP*GSSPFYLMKGERTL Trigger: CAATGTCCTTTCTCCTTTCATTAGGTAAAATGGAGATGATCCCCAGGGCCATCTTGGAAACAGTTTTTGAAGTTGGTAGAGTCTCGGGCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000446012.1 |
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| CDS TCA 90 bp | AACTTCTACTTCCACTCCAAAACTCAGCCTGGTTCATTTCATTTCTaGGATGTTTCTCAAGTAGGTTCTCTTTTCCATGTCCTCAACCCC | + |
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Preference number: 5 (lower is better) Translates to: NFYFHSKTQPGSFHF*DVSQVGSLFHVLNP Trigger: GGGGTTGAGGACATGGAAAAGAGAACCTACTTGAGAAACATCTCAGAAATGAAATGAACCAGGCTGAGTTTTGGAGTGGAAGTAGAAGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000622423.1 ENST00000658979.1 |
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| CDS TCA 72 bp | GTAGGCGAGTGGCTTCCCTGGTGGCTCACGCTCTGCTaGGCACCCTTCATCTGCACCAGGAAAGACGACATG | + |
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Preference number: 6 (lower is better) Translates to: VGEWLPWWLTLC*APFICTRKDDM Trigger: CATGTCGTCTTTCCTGGTGCAGATGAAGGGTGCTCAGCAGAGCGTGAGCCACCAGGGAAGCCACTCGCCTAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000443246.2 ENST00000657525.1 |
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| CDS CAA 72 bp | CGACCTGGTCCTAGGCCACCTTTCCCGTCTCATTTCTaGCCTCTCCTGTACCTTCGTGAACGTGCCATGTAC | + |
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Preference number: 6 (lower is better) Translates to: RPGPRPPFPSHF*PLLYLRERAMY Trigger: GTACATGGCACGTTCACGAAGGTACAGGAGAGGCAAGAAATGAGACGGGAAAGGTGGCCTAGGACCAGGTCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000656822.1 ENST00000658979.1 |
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| CDS CCA 72 bp | AAAGACAAGATGGCCTCAAGTCCCCAATATTCGAACTaGAGTAGGCGAGTGGCTTCCCTGGTGGCTCACGCT | + |
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Preference number: 6 (lower is better) Translates to: KDKMASSPQYSN*SRRVASLVAHA Trigger: AGCGTGAGCCACCAGGGAAGCCACTCGCCTACTCCAGTTCGAATATTGGGGACTTGAGGCCATCTTGTCTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000443246.2 ENST00000657525.1 |
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| CDS CAA 90 bp | TGTCATTCACGACCTGGTCCTAGGCCACCTTTCCCGTCTCATTTCTaGCCTCTCCTGTACCTTCGTGAACGTGCCATGTACCTTAGCGCT | + |
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Preference number: 6 (lower is better) Translates to: CHSRPGPRPPFPSHF*PLLYLRERAMYLSA Trigger: AGCGCTAAGGTACATGGCACGTTCACGAAGGTACAGGAGAGGCAAGAAATGAGACGGGAAAGGTGGCCTAGGACCAGGTCGTGAATGACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000656822.1 ENST00000658979.1 |
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| CDS CCA 72 bp | GGAACCTTGTGGTGCAGGAAACCTAACAGCGCTCTTTaGTTGAACGCGCTAATGAAACGGACCCCTTCCTAC | + |
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Preference number: 6 (lower is better) Translates to: GTLWCRKPNSAL*LNALMKRTPSY Trigger: GTAGGAAGGGGTCCGTTTCATTAGCGCGTTCAACCAAAGAGCGCTGTTAGGTTTCCTGCACCACAAGGTTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000446012.1 ENST00000657525.1 |
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| CDS CAA 72 bp | GCCTACAGCAGGGTTTCTCAATTTCAGTACTACTATTaGGCCCAGGTAATTCCTTGGTGGGGGAGGCCGTCC | + |
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Preference number: 6 (lower is better) Translates to: AYSRVSQFQYYY*AQVIPWWGRPS Trigger: GGACGGCCTCCCCCACCAAGGAATTACCTGGGCCAAATAGTAGTACTGAAATTGAGAAACCCTGCTGTAGGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000658979.1 |
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| CDS GCA 72 bp | CGTCCTGTGCATTACAGGATGTTCAGCAGCATCCTTTaGTTCAACCCATGGATGTCAGTAGCACTTCCCTCC | + |
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Preference number: 6 (lower is better) Translates to: RPVHYRMFSSIL*FNPWMSVALPS Trigger: GGAGGGAAGTGCTACTGACATCCATGGGTTGAAGCAAAGGATGCTGCTGAACATCCTGTAATGCACAGGACG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658979.1 |
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| CDS CAA 72 bp | ACCTTGTGGTGCAGGAAACCTAACAGCGCTCTTTGGTaGAACGCGCTAATGAAACGGACCCCTTCCTACTCT | + |
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Preference number: 6 (lower is better) Translates to: TLWCRKPNSALW*NALMKRTPSYS Trigger: AGAGTAGGAAGGGGTCCGTTTCATTAGCGCGTTCAACCAAAGAGCGCTGTTAGGTTTCCTGCACCACAAGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000446012.1 ENST00000657525.1 |
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| CDS CAA 90 bp | TGTCTCACTGCCTACAGCAGGGTTTCTCAATTTCAGTACTACTATTaGGCCCAGGTAATTCCTTGGTGGGGGAGGCCGTCCTGTGCATTA | + |
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Preference number: 6 (lower is better) Translates to: CLTAYSRVSQFQYYY*AQVIPWWGRPSCAL Trigger: TAATGCACAGGACGGCCTCCCCCACCAAGGAATTACCTGGGCCAAATAGTAGTACTGAAATTGAGAAACCCTGCTGTAGGCAGTGAGACA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000658979.1 |
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| CDS GCA 72 bp | GATGTCTACTGCTTGCACCTCAGAGACTTCGTAAAGTaGAGGAAAATGGGAACTGCTCGTCATACCAGCAAG | + |
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Preference number: 6 (lower is better) Translates to: DVYCLHLRDFVK*RKMGTARHTSK Trigger: CTTGCTGGTATGACGAGCAGTTCCCATTTTCCTGCACTTTACGAAGTCTCTGAGGTGCAAGCAGTAGACATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000443246.2 ENST00000656822.1 ENST00000657525.1 |
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| CDS CCA 72 bp | CAACTGGTTTGTTTTTGCTCACCTAACAGCGCTCTTTaGTTGAACGCGCTAATGAAACGGACCCCTTCCTAC | + |
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Preference number: 6 (lower is better) Translates to: QLVCFCSPNSAL*LNALMKRTPSY Trigger: GTAGGAAGGGGTCCGTTTCATTAGCGCGTTCAACCAAAGAGCGCTGTTAGGTGAGCAAAAACAAACCAGTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000443246.2 ENST00000608061.1 ENST00000656822.1 ENST00000658979.1 |
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| CDS CAA 72 bp | CTGGTTTGTTTTTGCTCACCTAACAGCGCTCTTTGGTaGAACGCGCTAATGAAACGGACCCCTTCCTACTCT | + |
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Preference number: 6 (lower is better) Translates to: LVCFCSPNSALW*NALMKRTPSYS Trigger: AGAGTAGGAAGGGGTCCGTTTCATTAGCGCGTTCAACCAAAGAGCGCTGTTAGGTGAGCAAAAACAAACCAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000443246.2 ENST00000608061.1 ENST00000656822.1 ENST00000658979.1 |
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| CDS CAA 90 bp | CAGACACAACTGGTTTGTTTTTGCTCACCTAACAGCGCTCTTTGGTaGAACGCGCTAATGAAACGGACCCCTTCCTACTCTTTCAGCAGT | + |
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Preference number: 6 (lower is better) Translates to: QTQLVCFCSPNSALW*NALMKRTPSYSFSS Trigger: ACTGCTGAAAGAGTAGGAAGGGGTCCGTTTCATTAGCGCGTTCAACCAAAGAGCGCTGTTAGGTGAGCAAAAACAAACCAGTTGTGTCTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000443246.2 ENST00000608061.1 ENST00000656822.1 ENST00000658979.1 |
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| CDS TCA 72 bp | TGTGTCTTTTCATGTCCTGTGCTCTCGGCACTTCCTTaGTTAGGTGGACCAACTGCTACAACCCATAGACAA | + |
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Preference number: 6 (lower is better) Translates to: CVFSCPVLSALP*LGGPTATTHRQ Trigger: TTGTCTATGGGTTGTAGCAGTTGGTCCACCTAATCAAGGAAGTGCCGAGAGCACAGGACATGAAAAGACACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000443246.2 ENST00000608061.1 ENST00000656822.1 ENST00000658979.1 |
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| CDS CAA 72 bp | AAGAGGTTCATGGGGATGAAGACCCGAGGCCAGAGTTaGAGTCTCCCCAAGTCCCATAAAGGTACTTATTAT | + |
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Preference number: 6 (lower is better) Translates to: KRFMGMKTRGQS*SLPKSHKGTYY Trigger: ATAATAAGTACCTTTATGGGACTTGGGGAGACTCAAACTCTGGCCTCGGGTCTTCATCCCCATGAACCTCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000622423.1 ENST00000658979.1 |
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| CDS CAA 90 bp | CTCTCTCTCAGAAAGAAAACCCTGCAAGACAGTCCTCTAAGTCTGTaGCTTCTCCTGCATTTTCCTATTAGCAGCACTATCTGTGTAGTT | + |
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Preference number: 6 (lower is better) Translates to: LSLRKKTLQDSPLSL*LLLHFPISSTICVV Trigger: AACTACACAGATAGTGCTGCTAATAGGAAAATGCAGGAGAAGCAACAGACTTAGAGGACTGTCTTGCAGGGTTTTCTTTCTGAGAGAGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000622423.1 ENST00000658979.1 |
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| CDS CAA 72 bp | AGAAAGAAAACCCTGCAAGACAGTCCTCTAAGTCTGTaGCTTCTCCTGCATTTTCCTATTAGCAGCACTATC | + |
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Preference number: 6 (lower is better) Translates to: RKKTLQDSPLSL*LLLHFPISSTI Trigger: GATAGTGCTGCTAATAGGAAAATGCAGGAGAAGCAACAGACTTAGAGGACTGTCTTGCAGGGTTTTCTTTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000622423.1 ENST00000658979.1 |
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| CDS CCA 72 bp | CTCTACCAACTTCAAAAACTGTTTCCAAGATGGCCCTaGGGATCATCTCCATTTTACCTAATGAAAGGAGAA | + |
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Preference number: 6 (lower is better) Translates to: LYQLQKLFPRWP*GSSPFYLMKGE Trigger: TTCTCCTTTCATTAGGTAAAATGGAGATGATCCCCAGGGCCATCTTGGAAACAGTTTTTGAAGTTGGTAGAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000446012.1 |
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| CDS CAA 72 bp | CAGGAAGAATTTCTCGTGAACAAATACAATGGCTCATaGTACAAATTATTGCTACTTTATGTATCAGAGGGC | + |
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Preference number: 6 (lower is better) Translates to: QEEFLVNKYNGS*YKLLLLYVSEG Trigger: GCCCTCTGATACATAAAGTAGCAATAATTTGTACAATGAGCCATTGTATTTGTTCACGAGAAATTCTTCCTG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000443246.2 |
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| CDS GCA 72 bp | CTGAATCTTGTATTTATAAAGCGACATTTCCACATCTaGCTTGTGAATTTCTTTCTTAGTCAAGTGGTCATA | + |
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Preference number: 6 (lower is better) Translates to: LNLVFIKRHFHI*LVNFFLSQVVI Trigger: TATGACCACTTGACTAAGAAAGAAATTCACAAGGCAGATGTGGAAATGTCGCTTTATAAATACAAGATTCAG 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000443246.2 |
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