Pregenerated sensors for LINC00708 (Homo sapiens)
Ensembl gene IDs: ENSG00000232170Ensembl transcript IDs: ENST00000428165.1, ENST00000454056.5, ENST00000657469.1
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GACCGGCGCGCCTCTCCCACAGGGGCGATCCTCCCTCCGCACCCTTaGGACCACCTCGGTGCCCTGTTCTTGGGAAAACAGGTTGCCTCG | + |
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Preference number: 5 (lower is better) Translates to: DRRASPTGAILPPHP*DHLGALFLGKQVAS Trigger: CGAGGCAACCTGTTTTCCCAAGAACAGGGCACCGAGGTGGTCGCAAGGGTGCGGAGGGAGGATCGCCCCTGTGGGAGAGGCGCGCCGGTC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000428165.1 ENST00000657469.1 |
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| CDS TCA 90 bp | CCTCCGCGCAATTGGCAGCATCTTCTGCGTGTAGCTACAGGTCCCTaGGAGAGACCGGCGCGCCTCTCCCACAGGGGCGATCCTCCCTCC | + |
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Preference number: 5 (lower is better) Translates to: PPRNWQHLLRVATGP*ERPARLSHRGDPPS Trigger: GGAGGGAGGATCGCCCCTGTGGGAGAGGCGCGCCGGTCTCTCTCAGGGACCTGTAGCTACACGCAGAAGATGCTGCCAATTGCGCGGAGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000428165.1 ENST00000657469.1 |
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| CDS GCA 90 bp | TCCCACAGGGGCGATCCTCCCTCCGCACCCTTGCGACCACCTCGGTaGCCTGTTCTTGGGAAAACAGGTTGCCTCGGAGTTCCAGAAGAA | + |
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Preference number: 5 (lower is better) Translates to: SHRGDPPSAPLRPPR*PVLGKTGCLGVPEE Trigger: TTCTTCTGGAACTCCGAGGCAACCTGTTTTCCCAAGAACAGGGCACCGAGGTGGTCGCAAGGGTGCGGAGGGAGGATCGCCCCTGTGGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000428165.1 ENST00000657469.1 |
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| CDS CCA 90 bp | CGATCCTCCCTCCGCACCCTTGCGACCACCTCGGTGCCCTGTTCTTaGGAAAACAGGTTGCCTCGGAGTTCCAGAAGAATCACAAGGAAA | + |
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Preference number: 5 (lower is better) Translates to: RSSLRTLATTSVPCS*ENRLPRSSRRITRK Trigger: TTTCCTTGTGATTCTTCTGGAACTCCGAGGCAACCTGTTTTCCCAAGAACAGGGCACCGAGGTGGTCGCAAGGGTGCGGAGGGAGGATCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000428165.1 ENST00000657469.1 |
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| CDS CAA 90 bp | AGACCGGCGCGCCTCTCCCACAGGGGCGATCCTCCCTCCGCACCCTaGCGACCACCTCGGTGCCCTGTTCTTGGGAAAACAGGTTGCCTC | + |
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Preference number: 6 (lower is better) Translates to: RPARLSHRGDPPSAP*RPPRCPVLGKTGCL Trigger: GAGGCAACCTGTTTTCCCAAGAACAGGGCACCGAGGTGGTCGCAAGGGTGCGGAGGGAGGATCGCCCCTGTGGGAGAGGCGCGCCGGTCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000428165.1 ENST00000657469.1 |
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| CDS GCA 72 bp | GCCTCTCCCACAGGGGCGATCCTCCCTCCGCACCCTTaGGACCACCTCGGTGCCCTGTTCTTGGGAAAACAG | + |
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Preference number: 6 (lower is better) Translates to: ASPTGAILPPHP*DHLGALFLGKQ Trigger: CTGTTTTCCCAAGAACAGGGCACCGAGGTGGTCGCAAGGGTGCGGAGGGAGGATCGCCCCTGTGGGAGAGGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000428165.1 ENST00000657469.1 |
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| CDS CAA 72 bp | CGCCTCTCCCACAGGGGCGATCCTCCCTCCGCACCCTaGCGACCACCTCGGTGCCCTGTTCTTGGGAAAACA | + |
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Preference number: 6 (lower is better) Translates to: RLSHRGDPPSAP*RPPRCPVLGKT Trigger: TGTTTTCCCAAGAACAGGGCACCGAGGTGGTCGCAAGGGTGCGGAGGGAGGATCGCCCCTGTGGGAGAGGCG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000428165.1 ENST00000657469.1 |
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| CDS GCA 72 bp | GGCGATCCTCCCTCCGCACCCTTGCGACCACCTCGGTaGCCTGTTCTTGGGAAAACAGGTTGCCTCGGAGTT | + |
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Preference number: 6 (lower is better) Translates to: GDPPSAPLRPPR*PVLGKTGCLGV Trigger: AACTCCGAGGCAACCTGTTTTCCCAAGAACAGGGCACCGAGGTGGTCGCAAGGGTGCGGAGGGAGGATCGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000428165.1 ENST00000657469.1 |
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| CDS TCA 72 bp | AATTGGCAGCATCTTCTGCGTGTAGCTACAGGTCCCTaGGAGAGACCGGCGCGCCTCTCCCACAGGGGCGAT | + |
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Preference number: 6 (lower is better) Translates to: NWQHLLRVATGP*ERPARLSHRGD Trigger: ATCGCCCCTGTGGGAGAGGCGCGCCGGTCTCTCTCAGGGACCTGTAGCTACACGCAGAAGATGCTGCCAATT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000428165.1 ENST00000657469.1 |
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| CDS CAA 90 bp | GCGATCCTCCCTCCGCACCCTTGCGACCACCTCGGTGCCCTGTTCTaGGGAAAACAGGTTGCCTCGGAGTTCCAGAAGAATCACAAGGAA | + |
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Preference number: 6 (lower is better) Translates to: AILPPHPCDHLGALF*GKQVASEFQKNHKE Trigger: TTCCTTGTGATTCTTCTGGAACTCCGAGGCAACCTGTTTTCCCAAGAACAGGGCACCGAGGTGGTCGCAAGGGTGCGGAGGGAGGATCGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000428165.1 ENST00000657469.1 |
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| CDS CCA 72 bp | CTCCGCACCCTTGCGACCACCTCGGTGCCCTGTTCTTaGGAAAACAGGTTGCCTCGGAGTTCCAGAAGAATC | + |
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Preference number: 6 (lower is better) Translates to: LRTLATTSVPCS*ENRLPRSSRRI Trigger: GATTCTTCTGGAACTCCGAGGCAACCTGTTTTCCCAAGAACAGGGCACCGAGGTGGTCGCAAGGGTGCGGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000428165.1 ENST00000657469.1 |
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| CDS CAA 72 bp | CCTCCGCACCCTTGCGACCACCTCGGTGCCCTGTTCTaGGGAAAACAGGTTGCCTCGGAGTTCCAGAAGAAT | + |
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Preference number: 6 (lower is better) Translates to: PPHPCDHLGALF*GKQVASEFQKN Trigger: ATTCTTCTGGAACTCCGAGGCAACCTGTTTTCCCAAGAACAGGGCACCGAGGTGGTCGCAAGGGTGCGGAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000428165.1 ENST00000657469.1 |
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| CDS CAA 72 bp | TGTCCTCAGCACCAAGCGTCAGAGACCTCCGCGCAATaGGCAGCATCTTCTGCGTGTAGCTACAGGTCCCTG | + |
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Preference number: 6 (lower is better) Translates to: CPQHQASETSAQ*AASSACSYRSL Trigger: CAGGGACCTGTAGCTACACGCAGAAGATGCTGCCAATTGCGCGGAGGTCTCTGACGCTTGGTGCTGAGGACA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000428165.1 ENST00000657469.1 |
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| CDS CAA 90 bp | TTAGTACAATGTCCTCAGCACCAAGCGTCAGAGACCTCCGCGCAATaGGCAGCATCTTCTGCGTGTAGCTACAGGTCCCTGAGAGAGACC | + |
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Preference number: 6 (lower is better) Translates to: LVQCPQHQASETSAQ*AASSACSYRSLRET Trigger: GGTCTCTCTCAGGGACCTGTAGCTACACGCAGAAGATGCTGCCAATTGCGCGGAGGTCTCTGACGCTTGGTGCTGAGGACATTGTACTAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000428165.1 ENST00000657469.1 |
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| CDS CAA 72 bp | GCGACCACCTCGGTGCCCTGTTCTTGGGAAAACAGGTaGCCTCGGAGTTCCAGAAGAATCACAAGGAAAATC | + |
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Preference number: 6 (lower is better) Translates to: ATTSVPCSWENR*PRSSRRITRKI Trigger: GATTTTCCTTGTGATTCTTCTGGAACTCCGAGGCAACCTGTTTTCCCAAGAACAGGGCACCGAGGTGGTCGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000428165.1 ENST00000657469.1 |
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| CDS CAA 72 bp | CTAGAGACTCTCCTAGGGAGCGTGTTATTCCTGGCTTaGCACAGGTATAGCTGTAGCTGTGACAGTGCTCTA | + |
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Preference number: 6 (lower is better) Translates to: LETLLGSVLFLA*HRYSCSCDSAL Trigger: TAGAGCACTGTCACAGCTACAGCTATACCTGTGCAAAGCCAGGAATAACACGCTCCCTAGGAGAGTCTCTAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000428165.1 ENST00000454056.5 ENST00000657469.1 |
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| CDS CAA 72 bp | CATTGGTACAGACCCCAGCACAGAAGAGAAGCAGGTTaGCAATACTTTTCCTCCGCGCAATTGGCAGCATCT | + |
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Preference number: 6 (lower is better) Translates to: HWYRPQHRREAG*QYFSSAQLAAS Trigger: AGATGCTGCCAATTGCGCGGAGGAAAAGTATTGCAAACCTGCTTCTCTTCTGTGCTGGGGTCTGTACCAATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000454056.5 |
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| CDS CAA 90 bp | AGATTAAGGCTAGAGACTCTCCTAGGGAGCGTGTTATTCCTGGCTTaGCACAGGTATAGCTGTAGCTGTGACAGTGCTCTATCCTCGCAA | + |
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Preference number: 6 (lower is better) Translates to: RLRLETLLGSVLFLA*HRYSCSCDSALSSQ Trigger: TTGCGAGGATAGAGCACTGTCACAGCTACAGCTATACCTGTGCAAAGCCAGGAATAACACGCTCCCTAGGAGAGTCTCTAGCCTTAATCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000428165.1 ENST00000454056.5 ENST00000657469.1 |
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| CDS CAA 90 bp | TTAACACGCCATCCTTCAAGAAGCATCTTCTGTAAGATAGGGACCTaGTTTGGTTCAATGAACATTGGTACAGACCCCAGCACAGAAGAG | + |
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Preference number: 6 (lower is better) Translates to: LTRHPSRSIFCKIGT*FGSMNIGTDPSTEE Trigger: CTCTTCTGTGCTGGGGTCTGTACCAATGTTCATTGAACCAAACAAGGTCCCTATCTTACAGAAGATGCTTCTTGAAGGATGGCGTGTTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000428165.1 ENST00000454056.5 ENST00000657469.1 |
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| CDS CAA 72 bp | GTTTATGACTTCAGCCTTGTCTCTTCAGGTGAGGGCTaGGGAAGTTTCATTCTACATGTAGCATCGTGTTCA | + |
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Preference number: 6 (lower is better) Translates to: VYDFSLVSSGEG*GSFILHVASCS Trigger: TGAACACGATGCTACATGTAGAATGAAACTTCCCAAGCCCTCACCTGAAGAGACAAGGCTGAAGTCATAAAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000428165.1 ENST00000657469.1 |
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| CDS CAA 72 bp | CATCCTTCAAGAAGCATCTTCTGTAAGATAGGGACCTaGTTTGGTTCAATGAACATTGGTACAGACCCCAGC | + |
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Preference number: 6 (lower is better) Translates to: HPSRSIFCKIGT*FGSMNIGTDPS Trigger: GCTGGGGTCTGTACCAATGTTCATTGAACCAAACAAGGTCCCTATCTTACAGAAGATGCTTCTTGAAGGATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000428165.1 ENST00000454056.5 ENST00000657469.1 |
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| CDS CAA 72 bp | CATTGGTACAGACCCCAGCACAGAAGAGAAGCAGGTTaGCAATACTTTTCCACGTATGATGTTTATGACTTC | + |
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Preference number: 6 (lower is better) Translates to: HWYRPQHRREAG*QYFSTYDVYDF Trigger: GAAGTCATAAACATCATACGTGGAAAAGTATTGCAAACCTGCTTCTCTTCTGTGCTGGGGTCTGTACCAATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000428165.1 |
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| CDS CAA 72 bp | AATACTTTTCCACGTATGATGTTTATGACTTCAGCCTaGTCTCTTCAGGTGAGGGCTTGGGAAGTTTCATTC | + |
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Preference number: 6 (lower is better) Translates to: NTFPRMMFMTSA*SLQVRAWEVSF Trigger: GAATGAAACTTCCCAAGCCCTCACCTGAAGAGACAAGGCTGAAGTCATAAACATCATACGTGGAAAAGTATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000428165.1 |
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| CDS CAA 72 bp | ATTTACAAACCACGTATGATGTTTATGACTTCAGCCTaGTCTCTTCAGGTGAGGGCTTGGGAAGTTTCATTC | + |
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Preference number: 6 (lower is better) Translates to: IYKPRMMFMTSA*SLQVRAWEVSF Trigger: GAATGAAACTTCCCAAGCCCTCACCTGAAGAGACAAGGCTGAAGTCATAAACATCATACGTGGTTTGTAAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000657469.1 |
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| CDS TCA 72 bp | TTTGAACCAAACACCTGCCAATCTGAAGGGCTTGGATaGAATGACCAGAATTATCTTCTTACTTTAGTGTCA | + |
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Preference number: 6 (lower is better) Translates to: FEPNTCQSEGLG*NDQNYLLTLVS Trigger: TGACACTAAAGTAAGAAGATAATTCTGGTCATTTCATCCAAGCCCTTCAGATTGGCAGGTGTTTGGTTCAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000428165.1 ENST00000657469.1 |
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| CDS CAA 72 bp | TCAAATATCAAAATAAGTCATGTCCTGAATATATGTTaGAACCAAACACCTGCCAATCTGAAGGGCTTGGAT | + |
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Preference number: 6 (lower is better) Translates to: SNIKISHVLNIC*NQTPANLKGLD Trigger: ATCCAAGCCCTTCAGATTGGCAGGTGTTTGGTTCAAACATATATTCAGGACATGACTTATTTTGATATTTGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000428165.1 ENST00000657469.1 |
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