Pregenerated sensors for LINC00706 (Homo sapiens)
Ensembl gene IDs: ENSG00000281186Ensembl transcript IDs: ENST00000628989.1
Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TATTTGCAAAGAAGTCTCATTAAAAGCGATGATGGAAATACAGTGTaGAATACAGTGCCTGGCTTTGCAGCAAGACCTCCTGGTGTCAGC | + |
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Preference number: 5 (lower is better) Translates to: YLQRSLIKSDDGNTV*NTVPGFAARPPGVS Trigger: GCTGACACCAGGAGGTCTTGCTGCAAAGCCAGGCACTGTATTCCACACTGTATTTCCATCATCGCTTTTAATGAGACTTCTTTGCAAATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000628989.1 |
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| CDS TCA 90 bp | CCAGGAAATATAGCGATGAACAAGTCCAACACATCTCTTTCTTCATaGTGTTTACATTGTAAGCAGGGAGAATCTTCAAGTACTCCTATT | + |
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Preference number: 5 (lower is better) Translates to: PGNIAMNKSNTSLSS*CLHCKQGESSSTPI Trigger: AATAGGAGTACTTGAAGATTCTCCCTGCTTACAATGTAAACATCATGAAGAAAGAGATGTGTTGGACTTGTTCATCGCTATATTTCCTGG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000628989.1 |
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| CDS CCA 72 bp | AACTCACAGCTTATGGACCTGCAGATGGTTCTGATGTaGGCAGTGGGAGCTGTAGCCTGGAAAATGAAGCTG | + |
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Preference number: 6 (lower is better) Translates to: NSQLMDLQMVLM*AVGAVAWKMKL Trigger: CAGCTTCATTTTCCAGGCTACAGCTCCCACTGCCCACATCAGAACCATCTGCAGGTCCATAAGCTGTGAGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000628989.1 |
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| CDS CAA 72 bp | ATGATGGAAATACAGTGTGGAATACAGTGCCTGGCTTaGCAGCAAGACCTCCTGGTGTCAGCTCTTAGGGTA | + |
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Preference number: 6 (lower is better) Translates to: MMEIQCGIQCLA*QQDLLVSALRV Trigger: TACCCTAAGAGCTGACACCAGGAGGTCTTGCTGCAAAGCCAGGCACTGTATTCCACACTGTATTTCCATCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000628989.1 |
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| CDS CAA 90 bp | TTAAAAGCGATGATGGAAATACAGTGTGGAATACAGTGCCTGGCTTaGCAGCAAGACCTCCTGGTGTCAGCTCTTAGGGTAGTGGTAAAA | + |
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Preference number: 6 (lower is better) Translates to: LKAMMEIQCGIQCLA*QQDLLVSALRVVVK Trigger: TTTTACCACTACCCTAAGAGCTGACACCAGGAGGTCTTGCTGCAAAGCCAGGCACTGTATTCCACACTGTATTTCCATCATCGCTTTTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000628989.1 |
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| CDS CCA 72 bp | AGAAGTCTCATTAAAAGCGATGATGGAAATACAGTGTaGAATACAGTGCCTGGCTTTGCAGCAAGACCTCCT | + |
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Preference number: 6 (lower is better) Translates to: RSLIKSDDGNTV*NTVPGFAARPP Trigger: AGGAGGTCTTGCTGCAAAGCCAGGCACTGTATTCCACACTGTATTTCCATCATCGCTTTTAATGAGACTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000628989.1 |
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