Pregenerated sensors for LINC00687 (Homo sapiens)
Ensembl gene IDs: ENSG00000228422Ensembl transcript IDs: ENST00000427835.3, ENST00000557899.2, ENST00000558175.1, ENST00000656506.1, ENST00000659465.1, ENST00000663254.1, ENST00000666572.1, ENST00000668731.1
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TGGGCCAAGCCTGGTTCCCATTGCCCAAGAAAGCTCTCAGGAAGATaGTCAAGTGCTTGCAGTAAGAAGCAATCAGCTTGCAGGGGATGG | + |
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Preference number: 5 (lower is better) Translates to: WAKPGSHCPRKLSGR*SSACSKKQSACRGW Trigger: CCATCCCCTGCAAGCTGATTGCTTCTTACTGCAAGCACTTGAGCATCTTCCTGAGAGCTTTCTTGGGCAATGGGAACCAGGCTTGGCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENST00000427835.3 ENST00000557899.2 ENST00000558175.1 ENST00000656506.1 ENST00000659465.1 ENST00000663254.1 ENST00000666572.1 |
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| CDS TCA 90 bp | TCCTTGGACAATGCCTTCTCCATTTCCTCATACTTCACCTGCCTGTaGTTGGGCCAAGCCTGGTTCCCATTGCCCAAGAAAGCTCTCAGG | + |
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Preference number: 5 (lower is better) Translates to: SLDNAFSISSYFTCL*LGQAWFPLPKKALR Trigger: CCTGAGAGCTTTCTTGGGCAATGGGAACCAGGCTTGGCCCAATCACAGGCAGGTGAAGTATGAGGAAATGGAGAAGGCATTGTCCAAGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENST00000427835.3 ENST00000557899.2 ENST00000558175.1 ENST00000656506.1 ENST00000659465.1 ENST00000663254.1 ENST00000666572.1 |
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| CDS TCA 90 bp | TCCAGCCTGGGAGACAGAGTGAGATTCCGTTTGCGGGGTGAAGGTTaGAGACTGCTCCTTGGACAATGCCTTCTCCATTTCCTCATACTT | + |
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Preference number: 5 (lower is better) Translates to: SSLGDRVRFRLRGEG*RLLLGQCLLHFLIL Trigger: AAGTATGAGGAAATGGAGAAGGCATTGTCCAAGGAGCAGTCTTCAACCTTCACCCCGCAAACGGAATCTCACTCTGTCTCCCAGGCTGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000558175.1 |
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| CDS CCA 90 bp | TGGACAATGCCTTCTCCATTTCCTCATACTTCACCTGCCTGTGATTaGGCCAAGCCTGGTTCCCATTGCCCAAGAAAGCTCTCAGGAAGA | + |
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Preference number: 5 (lower is better) Translates to: WTMPSPFPHTSPACD*AKPGSHCPRKLSGR Trigger: TCTTCCTGAGAGCTTTCTTGGGCAATGGGAACCAGGCTTGGCCCAATCACAGGCAGGTGAAGTATGAGGAAATGGAGAAGGCATTGTCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENST00000427835.3 ENST00000557899.2 ENST00000558175.1 ENST00000656506.1 ENST00000659465.1 ENST00000663254.1 ENST00000666572.1 |
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| CDS CCA 90 bp | CCCTCTCTAAGTAGTGTCAGGACCTTTCCATGTTCTCTTTCCACATaGACTAAACTGGGCTTCCTCACAACATGGTGGCCTCAAGGCAGC | + |
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Preference number: 5 (lower is better) Translates to: PSLSSVRTFPCSLST*TKLGFLTTWWPQGS Trigger: GCTGCCTTGAGGCCACCATGTTGTGAGGAAGCCCAGTTTAGTCCATGTGGAAAGAGAACATGGAAAGGTCCTGACACTACTTAGAGAGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000663254.1 |
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| CDS CCA 90 bp | GTAGTGTCAGGACCTTTCCATGTTCTCTTTCCACATGGACTAAACTaGGCTTCCTCACAACATGGTGGCCTCAAGGCAGCTGAATTGTTC | + |
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Preference number: 5 (lower is better) Translates to: VVSGPFHVLFPHGLN*ASSQHGGLKAAELF Trigger: GAACAATTCAGCTGCCTTGAGGCCACCATGTTGTGAGGAAGCCCAGTTTAGTCCATGTGGAAAGAGAACATGGAAAGGTCCTGACACTAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000663254.1 |
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| CDS GCA 90 bp | CATCTTATTCAGAGTTGTCTCACTTGCGGGGTGAAGGTTGAAGACTaGTCCTTGGACAATGCCTTCTCCATTTCCTCATACTTCACCTGC | + |
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Preference number: 5 (lower is better) Translates to: HLIQSCLTCGVKVED*SLDNAFSISSYFTC Trigger: GCAGGTGAAGTATGAGGAAATGGAGAAGGCATTGTCCAAGGAGCAGTCTTCAACCTTCACCCCGCAAGTGAGACAACTCTGAATAAGATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000427835.3 ENST00000557899.2 ENST00000656506.1 ENST00000659465.1 ENST00000663254.1 ENST00000666572.1 |
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| CDS TCA 90 bp | AGGAGGAAAGGCAATCTTTTGTGTATTAATAGGCAGCTTATCACATaGGCAGCTAGAGCTCCATCCAACTGGGGACCTTTGGAAGAGAGT | + |
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Preference number: 5 (lower is better) Translates to: RRKGNLLCINRQLIT*AARAPSNWGPLEES Trigger: ACTCTCTTCCAAAGGTCCCCAGTTGGATGGAGCTCTAGCTGCTCATGTGATAAGCTGCCTATTAATACACAAAAGATTGCCTTTCCTCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENST00000427835.3 ENST00000557899.2 ENST00000656506.1 ENST00000659465.1 ENST00000663254.1 ENST00000666572.1 |
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| CDS TCA 90 bp | TTCTCCTTCTCCTCCTTCTTCAACTTCTCCTTCTTCTCCTTGAAATaGGGATCACGTAAGTTTATTCCTGTACCTGCAGTTTCTTCCTCT | + |
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Preference number: 5 (lower is better) Translates to: FSFSSFFNFSFFSLK*GSRKFIPVPAVSSS Trigger: AGAGGAAGAAACTGCAGGTACAGGAATAAACTTACGTGATCCTCATTTCAAGGAGAAGAAGGAGAAGTTGAAGAAGGAGGAGAAGGAGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000666572.1 |
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| CDS TCA 90 bp | CATCCTTCTCCTTCTCCTCCTTCTTCAACTTCTCCTTCTTCTCCTTaGAATGAGGATCACGTAAGTTTATTCCTGTACCTGCAGTTTCTT | + |
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Preference number: 5 (lower is better) Translates to: HPSPSPPSSTSPSSP*NEDHVSLFLYLQFL Trigger: AAGAAACTGCAGGTACAGGAATAAACTTACGTGATCCTCATTTCAAGGAGAAGAAGGAGAAGTTGAAGAAGGAGGAGAAGGAGAAGGATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000666572.1 |
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| CDS TCA 90 bp | TTCTCCTTCTCCTCCTTCTTCAACTTCTCCTTCTTCTCCTTGAAATaGGGATCACGTAAGTTTATTCCTGTACCTGTAATCACAGCATTG | + |
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Preference number: 5 (lower is better) Translates to: FSFSSFFNFSFFSLK*GSRKFIPVPVITAL Trigger: CAATGCTGTGATTACAGGTACAGGAATAAACTTACGTGATCCTCATTTCAAGGAGAAGAAGGAGAAGTTGAAGAAGGAGGAGAAGGAGAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000427835.3 |
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| CDS CCA 72 bp | CCTTCTCCATTTCCTCATACTTCACCTGCCTGTGATTaGGCCAAGCCTGGTTCCCATTGCCCAAGAAAGCTC | + |
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Preference number: 6 (lower is better) Translates to: PSPFPHTSPACD*AKPGSHCPRKL Trigger: GAGCTTTCTTGGGCAATGGGAACCAGGCTTGGCCCAATCACAGGCAGGTGAAGTATGAGGAAATGGAGAAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENST00000427835.3 ENST00000557899.2 ENST00000558175.1 ENST00000656506.1 ENST00000659465.1 ENST00000663254.1 ENST00000666572.1 |
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| CDS TCA 72 bp | GGAGACAGAGTGAGATTCCGTTTGCGGGGTGAAGGTTaGAGACTGCTCCTTGGACAATGCCTTCTCCATTTC | + |
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Preference number: 6 (lower is better) Translates to: GDRVRFRLRGEG*RLLLGQCLLHF Trigger: GAAATGGAGAAGGCATTGTCCAAGGAGCAGTCTTCAACCTTCACCCCGCAAACGGAATCTCACTCTGTCTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000558175.1 |
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| CDS CCA 72 bp | GGACCTTTCCATGTTCTCTTTCCACATGGACTAAACTaGGCTTCCTCACAACATGGTGGCCTCAAGGCAGCT | + |
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Preference number: 6 (lower is better) Translates to: GPFHVLFPHGLN*ASSQHGGLKAA Trigger: AGCTGCCTTGAGGCCACCATGTTGTGAGGAAGCCCAGTTTAGTCCATGTGGAAAGAGAACATGGAAAGGTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000663254.1 |
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| CDS TCA 72 bp | AATGCCTTCTCCATTTCCTCATACTTCACCTGCCTGTaGTTGGGCCAAGCCTGGTTCCCATTGCCCAAGAAA | + |
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Preference number: 6 (lower is better) Translates to: NAFSISSYFTCL*LGQAWFPLPKK Trigger: TTTCTTGGGCAATGGGAACCAGGCTTGGCCCAATCACAGGCAGGTGAAGTATGAGGAAATGGAGAAGGCATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENST00000427835.3 ENST00000557899.2 ENST00000558175.1 ENST00000656506.1 ENST00000659465.1 ENST00000663254.1 ENST00000666572.1 |
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| CDS GCA 72 bp | CAGAGTTGTCTCACTTGCGGGGTGAAGGTTGAAGACTaGTCCTTGGACAATGCCTTCTCCATTTCCTCATAC | + |
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Preference number: 6 (lower is better) Translates to: QSCLTCGVKVED*SLDNAFSISSY Trigger: GTATGAGGAAATGGAGAAGGCATTGTCCAAGGAGCAGTCTTCAACCTTCACCCCGCAAGTGAGACAACTCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000427835.3 ENST00000557899.2 ENST00000656506.1 ENST00000659465.1 ENST00000663254.1 ENST00000666572.1 |
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| CDS CAA 72 bp | GCTTCCTCACAACATGGTGGCCTCAAGGCAGCTGAATaGTTCAAATGGTGGCTTAGGAATCTCAGAAGCTGT | + |
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Preference number: 6 (lower is better) Translates to: ASSQHGGLKAAE*FKWWLRNLRSC Trigger: ACAGCTTCTGAGATTCCTAAGCCACCATTTGAACAATTCAGCTGCCTTGAGGCCACCATGTTGTGAGGAAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000663254.1 |
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| CDS CAA 90 bp | CTAAACTGGGCTTCCTCACAACATGGTGGCCTCAAGGCAGCTGAATaGTTCAAATGGTGGCTTAGGAATCTCAGAAGCTGTCCTGAGAAT | + |
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Preference number: 6 (lower is better) Translates to: LNWASSQHGGLKAAE*FKWWLRNLRSCPEN Trigger: ATTCTCAGGACAGCTTCTGAGATTCCTAAGCCACCATTTGAACAATTCAGCTGCCTTGAGGCCACCATGTTGTGAGGAAGCCCAGTTTAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000663254.1 |
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| CDS TCA 72 bp | TCTTATTCAGAGTTGTCTCACTTGCGGGGTGAAGGTTaGAGACTGCTCCTTGGACAATGCCTTCTCCATTTC | + |
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Preference number: 6 (lower is better) Translates to: SYSELSHLRGEG*RLLLGQCLLHF Trigger: GAAATGGAGAAGGCATTGTCCAAGGAGCAGTCTTCAACCTTCACCCCGCAAGTGAGACAACTCTGAATAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000427835.3 ENST00000557899.2 ENST00000656506.1 ENST00000659465.1 ENST00000663254.1 ENST00000666572.1 |
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| CDS TCA 72 bp | GAACACATCTTATTCAGAGTTGTCTCACTTGCGGGGTaGAGGTTGAAGACTGCTCCTTGGACAATGCCTTCT | + |
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Preference number: 6 (lower is better) Translates to: EHILFRVVSLAG*RLKTAPWTMPS Trigger: AGAAGGCATTGTCCAAGGAGCAGTCTTCAACCTTCACCCCGCAAGTGAGACAACTCTGAATAAGATGTGTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000427835.3 ENST00000557899.2 ENST00000656506.1 ENST00000659465.1 ENST00000663254.1 ENST00000666572.1 |
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| CDS CCA 72 bp | CAACATGGTGGCCTCAAGGCAGCTGAATTGTTCAAATaGTGGCTTAGGAATCTCAGAAGCTGTCCTGAGAAT | + |
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Preference number: 6 (lower is better) Translates to: QHGGLKAAELFK*WLRNLRSCPEN Trigger: ATTCTCAGGACAGCTTCTGAGATTCCTAAGCCACCATTTGAACAATTCAGCTGCCTTGAGGCCACCATGTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000663254.1 |
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| CDS GCA 72 bp | GAGTGTAGAACACATCTTATTCAGAGTTGTCTCACTTaGGGGGTGAAGGTTGAAGACTGCTCCTTGGACAAT | + |
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Preference number: 6 (lower is better) Translates to: ECRTHLIQSCLT*GVKVEDCSLDN Trigger: ATTGTCCAAGGAGCAGTCTTCAACCTTCACCCCGCAAGTGAGACAACTCTGAATAAGATGTGTTCTACACTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENST00000427835.3 ENST00000557899.2 ENST00000656506.1 ENST00000659465.1 ENST00000663254.1 ENST00000666572.1 |
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| CDS GCA 72 bp | GTCCTCAGCACAGGCCACGAAGAGACAAACAAGGGCTaGCAGTATATAGGATATTCTTTCCTTCTTTCTCTT | + |
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Preference number: 6 (lower is better) Translates to: VLSTGHEETNKG*QYIGYSFLLSL Trigger: AAGAGAAAGAAGGAAAGAATATCCTATATACTGGCAGCCCTTGTTTGTCTCTTCGTGGCCTGTGCTGAGGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659465.1 |
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| CDS GCA 72 bp | GATGAAATCGGGTCATTCTTGTCACGGTCATCTGTTTaGCATAGAGGTCTAGGCATTCATAGTAATCCACTT | + |
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Preference number: 6 (lower is better) Translates to: DEIGSFLSRSSV*HRGLGIHSNPL Trigger: AAGTGGATTACTATGAATGCCTAGACCTCTATGGCAAACAGATGACCGTGACAAGAATGACCCGATTTCATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000427835.3 |
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| CDS CAA 72 bp | TCACGTAAGTTTATTCCTGTACCTGTAATCACAGCATaGTGTAGCTTATTCTCCTTCCTTGCTCTGCTTCCT | + |
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Preference number: 6 (lower is better) Translates to: SRKFIPVPVITA*CSLFSFLALLP Trigger: AGGAAGCAGAGCAAGGAAGGAGAATAAGCTACACAATGCTGTGATTACAGGTACAGGAATAAACTTACGTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000427835.3 |
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| CDS TCA 72 bp | ATACAAGTTTTAGATTCCATGAATTGTTCTTTTTACTaGCCTGTTTGCCATAGAGGTCTAGGCATTCATAGT | + |
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Preference number: 6 (lower is better) Translates to: IQVLDSMNCSFY*PVCHRGLGIHS Trigger: ACTATGAATGCCTAGACCTCTATGGCAAACAGGTCAGTAAAAAGAACAATTCATGGAATCTAAAACTTGTAT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000668731.1 |
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