Pregenerated sensors for LINC00686 (Homo sapiens)
Ensembl gene IDs: ENSG00000237687Ensembl transcript IDs: ENST00000435412.1
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CACACCACGCCCCTGATGCGTCCGTCTGCCGTCTGCACCTGCACCTaGACCTGCACCTGCTCTGCGTCCTGGGTGAGCTCCAGGCTGAGG | + |
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Preference number: 5 (lower is better) Translates to: HTTPLMRPSAVCTCT*TCTCSASWVSSRLR Trigger: CCTCAGCCTGGAGCTCACCCAGGACGCAGAGCAGGTGCAGGTGCAGGTGCAGGTGCAGACGGCAGACGGACGCATCAGGGGCGTGGTGTG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000435412.1 |
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| CDS TCA 90 bp | CCAGCCCTGAGCTTCTCAAGCGGGGCGTTATTCACACCACGCCCCTaGTGCGTCCGTCTGCCGTCTGCACCTGCACCTGCACCTGCACCT | + |
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Preference number: 5 (lower is better) Translates to: PALSFSSGALFTPRP*CVRLPSAPAPAPAP Trigger: AGGTGCAGGTGCAGGTGCAGGTGCAGACGGCAGACGGACGCATCAGGGGCGTGGTGTGAATAACGCCCCGCTTGAGAAGCTCAGGGCTGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000435412.1 |
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| CDS GCA 90 bp | GTGAGCTCCAGGCTGAGGCACCTTGGGTGGGCTTTCTGGCTGTCCTaGAGGCTCACTCTGGATTTGAGCAGGAACCTGTGGGCAACGTGG | + |
|
Preference number: 5 (lower is better) Translates to: VSSRLRHLGWAFWLS*RLTLDLSRNLWATW Trigger: CCACGTTGCCCACAGGTTCCTGCTCAAATCCAGAGTGAGCCTGCAGGACAGCCAGAAAGCCCACCCAAGGTGCCTCAGCCTGGAGCTCAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000435412.1 |
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| CDS CCA 90 bp | TCCTGCAGGCTCACTCTGGATTTGAGCAGGAACCTGTGGGCAACGTaGACCGTGCTCTCTTCCTGCTGTGAAGCTGCGGGCATTCCAGGG | + |
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Preference number: 5 (lower is better) Translates to: SCRLTLDLSRNLWAT*TVLSSCCEAAGIPG Trigger: CCCTGGAATGCCCGCAGCTTCACAGCAGGAAGAGAGCACGGTCCACGTTGCCCACAGGTTCCTGCTCAAATCCAGAGTGAGCCTGCAGGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000435412.1 |
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| CDS CCA 90 bp | TTCTGGCTGTCCTGCAGGCTCACTCTGGATTTGAGCAGGAACCTGTaGGCAACGTGGACCGTGCTCTCTTCCTGCTGTGAAGCTGCGGGC | + |
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Preference number: 5 (lower is better) Translates to: FWLSCRLTLDLSRNL*ATWTVLSSCCEAAG Trigger: GCCCGCAGCTTCACAGCAGGAAGAGAGCACGGTCCACGTTGCCCACAGGTTCCTGCTCAAATCCAGAGTGAGCCTGCAGGACAGCCAGAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000435412.1 |
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| CDS TCA 90 bp | ACCTTGGGTGGGCTTTCTGGCTGTCCTGCAGGCTCACTCTGGATTTaGGCAGGAACCTGTGGGCAACGTGGACCGTGCTCTCTTCCTGCT | + |
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Preference number: 5 (lower is better) Translates to: TLGGLSGCPAGSLWI*AGTCGQRGPCSLPA Trigger: AGCAGGAAGAGAGCACGGTCCACGTTGCCCACAGGTTCCTGCTCAAATCCAGAGTGAGCCTGCAGGACAGCCAGAAAGCCCACCCAAGGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000435412.1 |
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| CDS GCA 72 bp | CCCCTGATGCGTCCGTCTGCCGTCTGCACCTGCACCTaGACCTGCACCTGCTCTGCGTCCTGGGTGAGCTCC | + |
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Preference number: 6 (lower is better) Translates to: PLMRPSAVCTCT*TCTCSASWVSS Trigger: GGAGCTCACCCAGGACGCAGAGCAGGTGCAGGTGCAGGTGCAGGTGCAGACGGCAGACGGACGCATCAGGGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000435412.1 |
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| CDS TCA 72 bp | CAGCCTGGTGGAGCCACGTGGAAGGAAGGGCGGGCATaGCAAGACCCTCAGCTTCCTGCTCCAACTCCAACC | + |
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Preference number: 6 (lower is better) Translates to: QPGGATWKEGRA*QDPQLPAPTPT Trigger: GGTTGGAGTTGGAGCAGGAAGCTGAGGGTCTTGTCATGCCCGCCCTTCCTTCCACGTGGCTCCACCAGGCTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000435412.1 |
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| CDS GCA 72 bp | AGGAACCTGTGGGCAACGTGGACCGTGCTCTCTTCCTaGTGTGAAGCTGCGGGCATTCCAGGGCCTCCTTTC | + |
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Preference number: 6 (lower is better) Translates to: RNLWATWTVLSS*CEAAGIPGPPF Trigger: GAAAGGAGGCCCTGGAATGCCCGCAGCTTCACAGCAGGAAGAGAGCACGGTCCACGTTGCCCACAGGTTCCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000435412.1 |
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| CDS CAA 90 bp | CACCTTGGGTGGGCTTTCTGGCTGTCCTGCAGGCTCACTCTGGATTaGAGCAGGAACCTGTGGGCAACGTGGACCGTGCTCTCTTCCTGC | + |
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Preference number: 6 (lower is better) Translates to: HLGWAFWLSCRLTLD*SRNLWATWTVLSSC Trigger: GCAGGAAGAGAGCACGGTCCACGTTGCCCACAGGTTCCTGCTCAAATCCAGAGTGAGCCTGCAGGACAGCCAGAAAGCCCACCCAAGGTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000435412.1 |
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| CDS TCA 72 bp | GGGCTTTCTGGCTGTCCTGCAGGCTCACTCTGGATTTaGGCAGGAACCTGTGGGCAACGTGGACCGTGCTCT | + |
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Preference number: 6 (lower is better) Translates to: GLSGCPAGSLWI*AGTCGQRGPCS Trigger: AGAGCACGGTCCACGTTGCCCACAGGTTCCTGCTCAAATCCAGAGTGAGCCTGCAGGACAGCCAGAAAGCCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000435412.1 |
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| CDS GCA 72 bp | AGGCTGAGGCACCTTGGGTGGGCTTTCTGGCTGTCCTaGAGGCTCACTCTGGATTTGAGCAGGAACCTGTGG | + |
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Preference number: 6 (lower is better) Translates to: RLRHLGWAFWLS*RLTLDLSRNLW Trigger: CCACAGGTTCCTGCTCAAATCCAGAGTGAGCCTGCAGGACAGCCAGAAAGCCCACCCAAGGTGCCTCAGCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000435412.1 |
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| CDS CCA 72 bp | CTCACTCTGGATTTGAGCAGGAACCTGTGGGCAACGTaGACCGTGCTCTCTTCCTGCTGTGAAGCTGCGGGC | + |
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Preference number: 6 (lower is better) Translates to: LTLDLSRNLWAT*TVLSSCCEAAG Trigger: GCCCGCAGCTTCACAGCAGGAAGAGAGCACGGTCCACGTTGCCCACAGGTTCCTGCTCAAATCCAGAGTGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000435412.1 |
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| CDS CAA 72 bp | TGGGCTTTCTGGCTGTCCTGCAGGCTCACTCTGGATTaGAGCAGGAACCTGTGGGCAACGTGGACCGTGCTC | + |
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Preference number: 6 (lower is better) Translates to: WAFWLSCRLTLD*SRNLWATWTVL Trigger: GAGCACGGTCCACGTTGCCCACAGGTTCCTGCTCAAATCCAGAGTGAGCCTGCAGGACAGCCAGAAAGCCCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000435412.1 |
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| CDS CCA 72 bp | TCCTGCAGGCTCACTCTGGATTTGAGCAGGAACCTGTaGGCAACGTGGACCGTGCTCTCTTCCTGCTGTGAA | + |
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Preference number: 6 (lower is better) Translates to: SCRLTLDLSRNL*ATWTVLSSCCE Trigger: TTCACAGCAGGAAGAGAGCACGGTCCACGTTGCCCACAGGTTCCTGCTCAAATCCAGAGTGAGCCTGCAGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000435412.1 |
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