Pregenerated sensors for LINC00681 (Homo sapiens)
Ensembl gene IDs: ENSG00000255494Ensembl transcript IDs: ENST00000530150.1, ENST00000645778.1
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 72 bp | TGTTCTGGGAAGGCCAGAGAGCATGGTAAAACGGTGTaGGATTATCGTACCATAAGGGAGAGGAGGCTGCTT | + |
|
Preference number: 6 (lower is better) Translates to: CSGKAREHGKTV*DYRTIRERRLL Trigger: AAGCAGCCTCCTCTCCCTTATGGTACGATAATCCCACACCGTTTTACCATGCTCTCTGGCCTTCCCAGAACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000530150.1 ENST00000645778.1 |
||
| CDS TCA 72 bp | TGCTCAAACGCTGTCGTCTTCTTCTGTAGTACACTCTaGTTTTTCAGGGTCGGTGATTCTGCCCTTCGAGGC | + |
|
Preference number: 6 (lower is better) Translates to: CSNAVVFFCSTL*FFRVGDSALRG Trigger: GCCTCGAAGGGCAGAATCACCGACCCTGAAAAATCAGAGTGTACTACAGAAGAAGACGACAGCGTTTGAGCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000530150.1 ENST00000645778.1 |
||
| CDS GCA 72 bp | CGTACCATAAGGGAGAGGAGGCTGCTTCAACAAATGTaGTCAAACGCTGTCGTCTTCTTCTGTAGTACACTC | + |
|
Preference number: 6 (lower is better) Translates to: RTIRERRLLQQM*SNAVVFFCSTL Trigger: GAGTGTACTACAGAAGAAGACGACAGCGTTTGAGCACATTTGTTGAAGCAGCCTCCTCTCCCTTATGGTACG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000530150.1 ENST00000645778.1 |
||
| CDS CAA 72 bp | GGTTTTCTTGAATACGTAAACGTATTCTCCAGTGTTTaGGCTTTGTTACTCATTGTGCTGAGAACAAAGTCA | + |
|
Preference number: 6 (lower is better) Translates to: GFLEYVNVFSSV*ALLLIVLRTKS Trigger: TGACTTTGTTCTCAGCACAATGAGTAACAAAGCCAAAACACTGGAGAATACGTTTACGTATTCAAGAAAACC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000530150.1 ENST00000645778.1 |
||
| CDS TCA 72 bp | TATTATGAAAGCATTCTTCCTTGTCTGAGGTTTTCTTaGATACGTAAACGTATTCTCCAGTGTTTTGGCTTT | + |
|
Preference number: 6 (lower is better) Translates to: YYESILPCLRFS*IRKRILQCFGF Trigger: AAAGCCAAAACACTGGAGAATACGTTTACGTATTCAAGAAAACCTCAGACAAGGAAGAATGCTTTCATAATA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000530150.1 ENST00000645778.1 |
||