Pregenerated sensors for LINC00680 (Homo sapiens)
Ensembl gene IDs: ENSG00000215190Ensembl transcript IDs: ENST00000399751.6, ENST00000418368.1, ENST00000418765.6, ENST00000422882.1, ENST00000450081.5
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CGGAAGCTGACCTGCCTTGCCGCTCTGCTTGCCGCTCTGCCGCTCTaGCTTGATGGACTCCTATGGACACAAGCAATGCCACACAGCACC | + |
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Preference number: 5 (lower is better) Translates to: RKLTCLAALLAALPL*LDGLLWTQAMPHST Trigger: GGTGCTGTGTGGCATTGCTTGTGTCCATAGGAGTCCATCAAGGCAGAGCGGCAGAGCGGCAAGCAGAGCGGCAAGGCAGGTCAGCTTCCG 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000418368.1 ENST00000418765.6 ENST00000422882.1 |
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| CDS CCA 90 bp | GCCGCTCTGCTTGCCGCTCTGCCGCTCTGCCTTGATGGACTCCTATaGACACAAGCAATGCCACACAGCACCAACACTGGACAGGGACAC | + |
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Preference number: 5 (lower is better) Translates to: AALLAALPLCLDGLL*TQAMPHSTNTGQGH Trigger: GTGTCCCTGTCCAGTGTTGGTGCTGTGTGGCATTGCTTGTGTCCATAGGAGTCCATCAAGGCAGAGCGGCAGAGCGGCAAGCAGAGCGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000399751.6 ENST00000418368.1 ENST00000418765.6 ENST00000422882.1 ENST00000450081.5 |
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| CDS GCA 90 bp | CTCCAAGTCTTTCCCAAGGCCCTCTCACTGCTGCTGCTGAGCTGCTaGTGGGTCCCAGTGGTGCACAGCCTTCCTTGTTGTGATGAGCCA | + |
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Preference number: 5 (lower is better) Translates to: LQVFPKALSLLLLSC*WVPVVHSLPCCDEP Trigger: TGGCTCATCACAACAAGGAAGGCTGTGCACCACTGGGACCCAGCAGCAGCTCAGCAGCAGCAGTGAGAGGGCCTTGGGAAAGACTTGGAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000399751.6 ENST00000418368.1 ENST00000422882.1 |
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| CDS GCA 90 bp | ACCCTCCAAGTCTTTCCCAAGGCCCTCTCACTGCTGCTGCTGAGCTaGTGCTGGGTCCCAGTGGTGCACAGCCTTCCTTGTTGTGATGAG | + |
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Preference number: 5 (lower is better) Translates to: TLQVFPKALSLLLLS*CWVPVVHSLPCCDE Trigger: CTCATCACAACAAGGAAGGCTGTGCACCACTGGGACCCAGCAGCAGCTCAGCAGCAGCAGTGAGAGGGCCTTGGGAAAGACTTGGAGGGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000399751.6 ENST00000418368.1 ENST00000422882.1 |
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| CDS CCA 90 bp | CAAGTCTTTCCCAAGGCCCTCTCACTGCTGCTGCTGAGCTGCTGCTaGGTCCCAGTGGTGCACAGCCTTCCTTGTTGTGATGAGCCAGTC | + |
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Preference number: 5 (lower is better) Translates to: QVFPKALSLLLLSCC*VPVVHSLPCCDEPV Trigger: GACTGGCTCATCACAACAAGGAAGGCTGTGCACCACTGGGACCCAGCAGCAGCTCAGCAGCAGCAGTGAGAGGGCCTTGGGAAAGACTTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000399751.6 ENST00000418368.1 ENST00000422882.1 |
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| CDS GCA 90 bp | ATTGGGTTGAACTGCCTTGCCGCTCTGCTTGCCGCTCTGCCGCTCTaGCTTGATGGACTCCTATGGACACAAGCAATGCCACACAGCACC | + |
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Preference number: 5 (lower is better) Translates to: IGLNCLAALLAALPL*LDGLLWTQAMPHST Trigger: GGTGCTGTGTGGCATTGCTTGTGTCCATAGGAGTCCATCAAGGCAGAGCGGCAGAGCGGCAAGCAGAGCGGCAAGGCAGTTCAACCCAAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000399751.6 ENST00000450081.5 |
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| CDS CCA 90 bp | ATGTTCGAGGGCAGGAAGCATCCAGCATGGGAGAAAGATGAAGGCTaGAACACTCAGCAAGTCTGCTCATTCCAACTTCTGCCTGCTTTA | + |
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Preference number: 5 (lower is better) Translates to: MFEGRKHPAWEKDEG*NTQQVCSFQLLPAL Trigger: TAAAGCAGGCAGAAGTTGGAATGAGCAGACTTGCTGAGTGTTCCAGCCTTCATCTTTCTCCCATGCTGGATGCTTCCTGCCCTCGAACAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000422882.1 |
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| CDS CCA 90 bp | GAGCCAGTCGATGGCCTCAACTTTGCTGGGCTACAGGTGTGTTCCTaGTGGCCTTTAGATGACATCATTGACAAGATTATGACCAAGATA | + |
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Preference number: 5 (lower is better) Translates to: EPVDGLNFAGLQVCS*WPLDDIIDKIMTKI Trigger: TATCTTGGTCATAATCTTGTCAATGATGTCATCTAAAGGCCACCAGGAACACACCTGTAGCCCAGCAAAGTTGAGGCCATCGACTGGCTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000422882.1 |
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| CDS CCA 72 bp | CCCAAGGCCCTCTCACTGCTGCTGCTGAGCTGCTGCTaGGTCCCAGTGGTGCACAGCCTTCCTTGTTGTGAT | + |
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Preference number: 6 (lower is better) Translates to: PKALSLLLLSCC*VPVVHSLPCCD Trigger: ATCACAACAAGGAAGGCTGTGCACCACTGGGACCCAGCAGCAGCTCAGCAGCAGCAGTGAGAGGGCCTTGGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000399751.6 ENST00000418368.1 ENST00000422882.1 |
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| CDS TCA 72 bp | TGCCACACAGCACCAACACTGGACAGGGACACACTGTaGTGGTGGGGGCGGGGGCAAGGCAAATCAATACCC | + |
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Preference number: 6 (lower is better) Translates to: CHTAPTLDRDTL*WWGRGQGKSIP Trigger: GGGTATTGATTTGCCTTGCCCCCGCCCCCACCATCACAGTGTGTCCCTGTCCAGTGTTGGTGCTGTGTGGCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 5 transcripts: ENST00000399751.6 ENST00000418368.1 ENST00000418765.6 ENST00000422882.1 ENST00000450081.5 |
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| CDS GCA 72 bp | CGCTCTGCCTTGATGGACTCCTATGGACACAAGCAATaGCACACAGCACCAACACTGGACAGGGACACACTG | + |
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Preference number: 6 (lower is better) Translates to: RSALMDSYGHKQ*HTAPTLDRDTL Trigger: CAGTGTGTCCCTGTCCAGTGTTGGTGCTGTGTGGCATTGCTTGTGTCCATAGGAGTCCATCAAGGCAGAGCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000399751.6 ENST00000418368.1 ENST00000418765.6 ENST00000422882.1 ENST00000450081.5 |
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| CDS CAA 72 bp | TTCCTTGTTGTGATGAGCCAGTCGATGGCCTCAACTTaGCTGGGCTACAGGTGTGTTCCTGGTGGCCCAGTG | + |
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Preference number: 6 (lower is better) Translates to: FLVVMSQSMAST*LGYRCVPGGPV Trigger: CACTGGGCCACCAGGAACACACCTGTAGCCCAGCAAAGTTGAGGCCATCGACTGGCTCATCACAACAAGGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000399751.6 ENST00000418368.1 |
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| CDS CAA 90 bp | TGCACAGCCTTCCTTGTTGTGATGAGCCAGTCGATGGCCTCAACTTaGCTGGGCTACAGGTGTGTTCCTGGTGGCCCAGTGTTTTGTGAC | + |
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Preference number: 6 (lower is better) Translates to: CTAFLVVMSQSMAST*LGYRCVPGGPVFCD Trigger: GTCACAAAACACTGGGCCACCAGGAACACACCTGTAGCCCAGCAAAGTTGAGGCCATCGACTGGCTCATCACAACAAGGAAGGCTGTGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000399751.6 ENST00000418368.1 |
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| CDS TCA 72 bp | GTTCGAGGGCAGGAAGCATCCAGCATGGGAGAAAGATaGAGGCTGGAACACTCAGCAAGTCTGCTCATTCCA | + |
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Preference number: 6 (lower is better) Translates to: VRGQEASSMGER*RLEHSASLLIP Trigger: TGGAATGAGCAGACTTGCTGAGTGTTCCAGCCTTCATCTTTCTCCCATGCTGGATGCTTCCTGCCCTCGAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000422882.1 |
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| CDS CCA 72 bp | TGGAGTCTGATGTTCGAGGGCAGGAAGCATCCAGCATaGGAGAAAGATGAAGGCTGGAACACTCAGCAAGTC | + |
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Preference number: 6 (lower is better) Translates to: WSLMFEGRKHPA*EKDEGWNTQQV Trigger: GACTTGCTGAGTGTTCCAGCCTTCATCTTTCTCCCATGCTGGATGCTTCCTGCCCTCGAACATCAGACTCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000422882.1 |
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| CDS CAA 72 bp | TCACAGCCTGTTTCCTTGACCCTCCCCAAGATCACCTaGTATAAGCCAAACCCTCCAAGTCTTTCCCAAGGC | + |
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Preference number: 6 (lower is better) Translates to: SQPVSLTLPKIT*YKPNPPSLSQG Trigger: GCCTTGGGAAAGACTTGGAGGGTTTGGCTTATACAAGGTGATCTTGGGGAGGGTCAAGGAAACAGGCTGTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000422882.1 |
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| CDS TCA 72 bp | ACAAATACGCCTAGGCATCCTCCACCCCGGCTTATGTaGGCAGCTGCTGCTTTTACATCAATTGTAGCACCA | + |
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Preference number: 6 (lower is better) Translates to: TNTPRHPPPRLM*AAAAFTSIVAP Trigger: TGGTGCTACAATTGATGTAAAAGCAGCAGCTGCTCACATAAGCCGGGGTGGAGGATGCCTAGGCGTATTTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000422882.1 |
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| CDS CCA 72 bp | GATGGCCTCAACTTTGCTGGGCTACAGGTGTGTTCCTaGTGGCCTTTAGATGACATCATTGACAAGATTATG | + |
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Preference number: 6 (lower is better) Translates to: DGLNFAGLQVCS*WPLDDIIDKIM Trigger: CATAATCTTGTCAATGATGTCATCTAAAGGCCACCAGGAACACACCTGTAGCCCAGCAAAGTTGAGGCCATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000422882.1 |
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| CDS GCA 72 bp | GCCACACTCTCACATATACACCCAGGAACAATCCTTTaGATCCTTCAATCCAATCAAGTTGACACTCAATAT | + |
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Preference number: 6 (lower is better) Translates to: ATLSHIHPGTIL*ILQSNQVDTQY Trigger: ATATTGAGTGTCAACTTGATTGGATTGAAGGATGCAAAGGATTGTTCCTGGGTGTATATGTGAGAGTGTGGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000422882.1 |
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| CDS CAA 72 bp | ATAGATGTATATATGAAGGTGAGTTTATCAGGAGAATaGGCTCACATGATCACAAGGGGAAGTCTCACAATA | + |
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Preference number: 6 (lower is better) Translates to: IDVYMKVSLSGE*AHMITRGSLTI Trigger: TATTGTGAGACTTCCCCTTGTGATCATGTGAGCCAATTCTCCTGATAAACTCACCTTCATATATACATCTAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000422882.1 |
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