Pregenerated sensors for LINC00677 (Homo sapiens)
Ensembl gene IDs: ENSG00000259717Ensembl transcript IDs: ENST00000558224.1, ENST00000560742.1
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TTGGTTGCACGACCCTTTCCGCATTTACGCATTTCAAGCAAGGCTTaGCGACCGGAGGGGCTCAAGGCCCTGTGCACAGCCGCGCGGCCA | + |
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Preference number: 5 (lower is better) Translates to: LVARPFPHLRISSKA*RPEGLKALCTAARP Trigger: TGGCCGCGCGGCTGTGCACAGGGCCTTGAGCCCCTCCGGTCGTCAAGCCTTGCTTGAAATGCGTAAATGCGGAAAGGGTCGTGCAACCAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000560742.1 |
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| CDS CCA 90 bp | ATAGTGGGTAGAGTTTCCGTTTTGCCAGGTGACGATTTCTGCAGGTaGAGGGTGCTGTTGGTTGCACGACCCCTGAGAGACGGTGTGGAT | + |
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Preference number: 5 (lower is better) Translates to: IVGRVSVLPGDDFCR*RVLLVARPLRDGVD Trigger: ATCCACACCGTCTCTCAGGGGTCGTGCAACCAACAGCACCCTCCACCTGCAGAAATCGTCACCTGGCAAAACGGAAACTCTACCCACTAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000558224.1 |
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| CDS GCA 90 bp | GTAGAGTTTCCGTTTTGCCAGGTGACGATTTCTGCAGGTGGAGGGTaGTGTTGGTTGCACGACCCTTTCCGCATTTACGCATTTCAAGCA | + |
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Preference number: 5 (lower is better) Translates to: VEFPFCQVTISAGGG*CWLHDPFRIYAFQA Trigger: TGCTTGAAATGCGTAAATGCGGAAAGGGTCGTGCAACCAACAGCACCCTCCACCTGCAGAAATCGTCACCTGGCAAAACGGAAACTCTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000560742.1 |
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| CDS CCA 90 bp | TTTCCGTTTTGCCAGGTGACGATTTCTGCAGGTGGAGGGTGCTGTTaGTTGCACGACCCTTTCCGCATTTACGCATTTCAAGCAAGGCTT | + |
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Preference number: 5 (lower is better) Translates to: FPFCQVTISAGGGCC*LHDPFRIYAFQARL Trigger: AAGCCTTGCTTGAAATGCGTAAATGCGGAAAGGGTCGTGCAACCAACAGCACCCTCCACCTGCAGAAATCGTCACCTGGCAAAACGGAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000560742.1 |
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| CDS CCA 90 bp | ATAGTGGGTAGAGTTTCCGTTTTGCCAGGTGACGATTTCTGCAGGTaGAGGGTGCTGTTGGTTGCACGACCCTTTCCGCATTTACGCATT | + |
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Preference number: 5 (lower is better) Translates to: IVGRVSVLPGDDFCR*RVLLVARPFPHLRI Trigger: AATGCGTAAATGCGGAAAGGGTCGTGCAACCAACAGCACCCTCCACCTGCAGAAATCGTCACCTGGCAAAACGGAAACTCTACCCACTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000560742.1 |
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| CDS CAA 90 bp | GTTGGTTGCACGACCCTTTCCGCATTTACGCATTTCAAGCAAGGCTaGACGACCGGAGGGGCTCAAGGCCCTGTGCACAGCCGCGCGGCC | + |
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Preference number: 6 (lower is better) Translates to: VGCTTLSAFTHFKQG*TTGGAQGPVHSRAA Trigger: GGCCGCGCGGCTGTGCACAGGGCCTTGAGCCCCTCCGGTCGTCAAGCCTTGCTTGAAATGCGTAAATGCGGAAAGGGTCGTGCAACCAAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000560742.1 |
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| CDS TCA 72 bp | CGACCCTTTCCGCATTTACGCATTTCAAGCAAGGCTTaGCGACCGGAGGGGCTCAAGGCCCTGTGCACAGCC | + |
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Preference number: 6 (lower is better) Translates to: RPFPHLRISSKA*RPEGLKALCTA Trigger: GGCTGTGCACAGGGCCTTGAGCCCCTCCGGTCGTCAAGCCTTGCTTGAAATGCGTAAATGCGGAAAGGGTCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000560742.1 |
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| CDS CAA 72 bp | TTGCCAGGTGACGATTTCTGCAGGTGGAGGGTGCTGTaGGTTGCACGACCCCTGAGAGACGGTGTGGATGGG | + |
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Preference number: 6 (lower is better) Translates to: LPGDDFCRWRVL*VARPLRDGVDG Trigger: CCCATCCACACCGTCTCTCAGGGGTCGTGCAACCAACAGCACCCTCCACCTGCAGAAATCGTCACCTGGCAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000558224.1 |
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| CDS CAA 72 bp | ACGACCCTTTCCGCATTTACGCATTTCAAGCAAGGCTaGACGACCGGAGGGGCTCAAGGCCCTGTGCACAGC | + |
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Preference number: 6 (lower is better) Translates to: TTLSAFTHFKQG*TTGGAQGPVHS Trigger: GCTGTGCACAGGGCCTTGAGCCCCTCCGGTCGTCAAGCCTTGCTTGAAATGCGTAAATGCGGAAAGGGTCGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000560742.1 |
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| CDS GCA 72 bp | CCGTTTTGCCAGGTGACGATTTCTGCAGGTGGAGGGTaGTGTTGGTTGCACGACCCTTTCCGCATTTACGCA | + |
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Preference number: 6 (lower is better) Translates to: PFCQVTISAGGG*CWLHDPFRIYA Trigger: TGCGTAAATGCGGAAAGGGTCGTGCAACCAACAGCACCCTCCACCTGCAGAAATCGTCACCTGGCAAAACGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000560742.1 |
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| CDS CCA 72 bp | AGAGTTTCCGTTTTGCCAGGTGACGATTTCTGCAGGTaGAGGGTGCTGTTGGTTGCACGACCCCTGAGAGAC | + |
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Preference number: 6 (lower is better) Translates to: RVSVLPGDDFCR*RVLLVARPLRD Trigger: GTCTCTCAGGGGTCGTGCAACCAACAGCACCCTCCACCTGCAGAAATCGTCACCTGGCAAAACGGAAACTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000558224.1 |
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| CDS CCA 72 bp | AGAGTTTCCGTTTTGCCAGGTGACGATTTCTGCAGGTaGAGGGTGCTGTTGGTTGCACGACCCTTTCCGCAT | + |
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Preference number: 6 (lower is better) Translates to: RVSVLPGDDFCR*RVLLVARPFPH Trigger: ATGCGGAAAGGGTCGTGCAACCAACAGCACCCTCCACCTGCAGAAATCGTCACCTGGCAAAACGGAAACTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000560742.1 |
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| CDS CAA 90 bp | CCGTTTTGCCAGGTGACGATTTCTGCAGGTGGAGGGTGCTGTTGGTaGCACGACCCTTTCCGCATTTACGCATTTCAAGCAAGGCTTGAC | + |
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Preference number: 6 (lower is better) Translates to: PFCQVTISAGGGCCW*HDPFRIYAFQARLD Trigger: GTCAAGCCTTGCTTGAAATGCGTAAATGCGGAAAGGGTCGTGCAACCAACAGCACCCTCCACCTGCAGAAATCGTCACCTGGCAAAACGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000560742.1 |
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| CDS CCA 72 bp | TGCCAGGTGACGATTTCTGCAGGTGGAGGGTGCTGTTaGTTGCACGACCCTTTCCGCATTTACGCATTTCAA | + |
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Preference number: 6 (lower is better) Translates to: CQVTISAGGGCC*LHDPFRIYAFQ Trigger: TTGAAATGCGTAAATGCGGAAAGGGTCGTGCAACCAACAGCACCCTCCACCTGCAGAAATCGTCACCTGGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000560742.1 |
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| CDS CAA 72 bp | TTGCCAGGTGACGATTTCTGCAGGTGGAGGGTGCTGTaGGTTGCACGACCCTTTCCGCATTTACGCATTTCA | + |
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Preference number: 6 (lower is better) Translates to: LPGDDFCRWRVL*VARPFPHLRIS Trigger: TGAAATGCGTAAATGCGGAAAGGGTCGTGCAACCAACAGCACCCTCCACCTGCAGAAATCGTCACCTGGCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000560742.1 |
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| CDS CAA 90 bp | GTTTCCGTTTTGCCAGGTGACGATTTCTGCAGGTGGAGGGTGCTGTaGGTTGCACGACCCTTTCCGCATTTACGCATTTCAAGCAAGGCT | + |
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Preference number: 6 (lower is better) Translates to: VSVLPGDDFCRWRVL*VARPFPHLRISSKA Trigger: AGCCTTGCTTGAAATGCGTAAATGCGGAAAGGGTCGTGCAACCAACAGCACCCTCCACCTGCAGAAATCGTCACCTGGCAAAACGGAAAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000560742.1 |
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