Pregenerated sensors for LINC00676 (Homo sapiens)
Ensembl gene IDs: ENSG00000234854Ensembl transcript IDs: ENST00000416090.1
Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CATCGCAGGCCGGAGTGGTCTCCACATTCCCCAAGGGCTCACCCATaGCCTTTAGAAGAAAGTCCAAGCACTAGCTTGGCACTCAAAGTC | + |
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Preference number: 5 (lower is better) Translates to: HRRPEWSPHSPRAHP*PLEESPSTSLALKV Trigger: GACTTTGAGTGCCAAGCTAGTGCTTGGACTTTCTTCTAAAGGTCATGGGTGAGCCCTTGGGGAATGTGGAGACCACTCCGGCCTGCGATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000416090.1 |
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| CDS CCA 90 bp | AGGCACATGAAATGCCTGTGTTTTCGTGAGCAAACGTTTCTCCTGTaGCCTTCCAGTTTCTCCCAGTACATCCTGTGGACTATCGTGGAG | + |
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Preference number: 5 (lower is better) Translates to: RHMKCLCFREQTFLL*PSSFSQYILWTIVE Trigger: CTCCACGATAGTCCACAGGATGTACTGGGAGAAACTGGAAGGCCACAGGAGAAACGTTTGCTCACGAAAACACAGGCATTTCATGTGCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000416090.1 |
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| CDS TCA 90 bp | ATTCTTCATCCCGTGCTCCAGGCACATGAAATGCCTGTGTTTTCGTaGGCAAACGTTTCTCCTGTGGCCTTCCAGTTTCTCCCAGTACAT | + |
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Preference number: 5 (lower is better) Translates to: ILHPVLQAHEMPVFS*ANVSPVAFQFLPVH Trigger: ATGTACTGGGAGAAACTGGAAGGCCACAGGAGAAACGTTTGCTCACGAAAACACAGGCATTTCATGTGCCTGGAGCACGGGATGAAGAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000416090.1 |
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| CDS GCA 90 bp | CAAGCACTAGCTTGGCACTCAAAGTCTAAGGAATTCTTCATCCCGTaGTCCAGGCACATGAAATGCCTGTGTTTTCGTGAGCAAACGTTT | + |
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Preference number: 5 (lower is better) Translates to: QALAWHSKSKEFFIP*SRHMKCLCFREQTF Trigger: AAACGTTTGCTCACGAAAACACAGGCATTTCATGTGCCTGGAGCACGGGATGAAGAATTCCTTAGACTTTGAGTGCCAAGCTAGTGCTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000416090.1 |
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| CDS GCA 72 bp | GCTTGGCACTCAAAGTCTAAGGAATTCTTCATCCCGTaGTCCAGGCACATGAAATGCCTGTGTTTTCGTGAG | + |
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Preference number: 6 (lower is better) Translates to: AWHSKSKEFFIP*SRHMKCLCFRE Trigger: CTCACGAAAACACAGGCATTTCATGTGCCTGGAGCACGGGATGAAGAATTCCTTAGACTTTGAGTGCCAAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000416090.1 |
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| CDS CCA 72 bp | AAATGCCTGTGTTTTCGTGAGCAAACGTTTCTCCTGTaGCCTTCCAGTTTCTCCCAGTACATCCTGTGGACT | + |
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Preference number: 6 (lower is better) Translates to: KCLCFREQTFLL*PSSFSQYILWT Trigger: AGTCCACAGGATGTACTGGGAGAAACTGGAAGGCCACAGGAGAAACGTTTGCTCACGAAAACACAGGCATTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000416090.1 |
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| CDS CCA 72 bp | GTGTATCAAATAGTGGCTGTGCCAAGGATCAGTGTCTaGTGGAGACAGCGGATTTTCCAAGGTCATGGAAGT | + |
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Preference number: 6 (lower is better) Translates to: VYQIVAVPRISV*WRQRIFQGHGS Trigger: ACTTCCATGACCTTGGAAAATCCGCTGTCTCCACCAGACACTGATCCTTGGCACAGCCACTATTTGATACAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000416090.1 |
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| CDS TCA 72 bp | AGTCTAAGGAATTCTTCATCCCGTGCTCCAGGCACATaGAATGCCTGTGTTTTCGTGAGCAAACGTTTCTCC | + |
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Preference number: 6 (lower is better) Translates to: SLRNSSSRAPGT*NACVFVSKRFS Trigger: GGAGAAACGTTTGCTCACGAAAACACAGGCATTTCATGTGCCTGGAGCACGGGATGAAGAATTCCTTAGACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000416090.1 |
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| CDS CCA 72 bp | TATCAAATAGTGGCTGTGCCAAGGATCAGTGTCTGGTaGAGACAGCGGATTTTCCAAGGTCATGGAAGTGAA | + |
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Preference number: 6 (lower is better) Translates to: YQIVAVPRISVW*RQRIFQGHGSE Trigger: TTCACTTCCATGACCTTGGAAAATCCGCTGTCTCCACCAGACACTGATCCTTGGCACAGCCACTATTTGATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000416090.1 |
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