Pregenerated sensors for LINC00661 (Homo sapiens)
Ensembl gene IDs: ENSG00000205396Ensembl transcript IDs: ENST00000546512.5, ENST00000547102.5, ENST00000549131.1, ENST00000549354.6, ENST00000549718.5, ENST00000552608.6, ENST00000552685.1
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GGTGGCAGCTACGTCTCACTGCTCACACTGGGCAATGATGCCCCCTaGTCCTGTGCAAGTAGGGTAGCCACGTCTTCCTCCACGTCCATC | + |
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Preference number: 5 (lower is better) Translates to: GGSYVSLLTLGNDAP*SCASRVATSSSTSI Trigger: GATGGACGTGGAGGAAGACGTGGCTACCCTACTTGCACAGGAGCAGGGGGCATCATTGCCCAGTGTGAGCAGTGAGACGTAGCTGCCACC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000549354.6 ENST00000549718.5 |
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| CDS TCA 90 bp | TTCTGCACAACCACTTACAGCACCTCTGTGTCTCCAACTGCTCCATaGCACGGAGGTAGGCTGGCGGCACTTGGCACAGTGACAGCATGG | + |
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Preference number: 5 (lower is better) Translates to: FCTTTYSTSVSPTAP*HGGRLAALGTVTAW Trigger: CCATGCTGTCACTGTGCCAAGTGCCGCCAGCCTACCTCCGTGTCATGGAGCAGTTGGAGACACAGAGGTGCTGTAAGTGGTTGTGCAGAA 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000546512.5 ENST00000549131.1 |
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| CDS GCA 90 bp | CCTCGGGCACGCCAGGACTTAACTCTGCCAACTCTGGAGGTTTTGTaGCTTCGGTACATGCTAGCCATCCAGAACGTAGCTGCCTGCTTA | + |
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Preference number: 5 (lower is better) Translates to: PRARQDLTLPTLEVL*LRYMLAIQNVAACL Trigger: TAAGCAGGCAGCTACGTTCTGGATGGCTAGCATGTACCGAAGGCACAAAACCTCCAGAGTTGGCAGAGTTAAGTCCTGGCGTGCCCGAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000547102.5 ENST00000549354.6 ENST00000552608.6 ENST00000552685.1 |
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| CDS GCA 90 bp | GCCTCTGAGGGAACAGACATCATTATTAGAGATGAGCGTTGCGTCTaGCTCCTCCGCATGCACCAGCATCCATCCTATCATCCACTTGGC | + |
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Preference number: 5 (lower is better) Translates to: ASEGTDIIIRDERCV*LLRMHQHPSYHPLG Trigger: GCCAAGTGGATGATAGGATGGATGCTGGTGCATGCGGAGGAGGCAGACGCAACGCTCATCTCTAATAATGATGTCTGTTCCCTCAGAGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000549354.6 |
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| CDS GCA 90 bp | CTAGCCGCCTCTGAGGGAACAGACATCATTATTAGAGATGAGCGTTaGGTCTGCCTCCTCCGCATGCACCAGCATCCATCCTATCATCCA | + |
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Preference number: 5 (lower is better) Translates to: LAASEGTDIIIRDER*VCLLRMHQHPSYHP Trigger: TGGATGATAGGATGGATGCTGGTGCATGCGGAGGAGGCAGACGCAACGCTCATCTCTAATAATGATGTCTGTTCCCTCAGAGGCGGCTAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000549354.6 |
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| CDS GCA 90 bp | CAGACATCATTATTAGAGATGAGCGTTGCGTCTGCCTCCTCCGCATaGACCAGCATCCATCCTATCATCCACTTGGCCCTGGCAATTGAT | + |
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Preference number: 5 (lower is better) Translates to: QTSLLEMSVASASSA*TSIHPIIHLALAID Trigger: ATCAATTGCCAGGGCCAAGTGGATGATAGGATGGATGCTGGTGCATGCGGAGGAGGCAGACGCAACGCTCATCTCTAATAATGATGTCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000549354.6 |
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| CDS GCA 72 bp | CAACGGCTGCTGGGCGCTGCCACCGTCTGGAAAGCCTaGACTGGCCGCGACACCTGTTGCGGCTGCAGCAGT | + |
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Preference number: 6 (lower is better) Translates to: QRLLGAATVWKA*TGRDTCCGCSS Trigger: ACTGCTGCAGCCGCAACAGGTGTCGCGGCCAGTGCAGGCTTTCCAGACGGTGGCAGCGCCCAGCAGCCGTTG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000549354.6 |
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| CDS GCA 72 bp | TGGTACAGGCCCAGCGAGCCTTTGAGGACCACCGGGTaGGCACCCAGCCTGTCCACCAGTGTGGAGCTGTTT | + |
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Preference number: 6 (lower is better) Translates to: WYRPSEPLRTTG*APSLSTSVELF Trigger: AAACAGCTCCACACTGGTGGACAGGCTGGGTGCGCACCCGGTGGTCCTCAAAGGCTCGCTGGGCCTGTACCA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000549354.6 |
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| CDS CCA 72 bp | GGAGGTAGGCTGGCGGCACTTGGCACAGTGACAGCATaGGTTCACAGCCTCTGTCATGACGGGGCCCTACCT | + |
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Preference number: 6 (lower is better) Translates to: GGRLAALGTVTA*VHSLCHDGALP Trigger: AGGTAGGGCCCCGTCATGACAGAGGCTGTGAACCCATGCTGTCACTGTGCCAAGTGCCGCCAGCCTACCTCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000549131.1 |
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| CDS CCA 72 bp | GGAGGTAGGCTGGCGGCACTTGGCACAGTGACAGCATaGGTTCACAGCCTCTGTCATGACGGGGCCCTACCA | + |
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Preference number: 6 (lower is better) Translates to: GGRLAALGTVTA*VHSLCHDGALP Trigger: TGGTAGGGCCCCGTCATGACAGAGGCTGTGAACCCATGCTGTCACTGTGCCAAGTGCCGCCAGCCTACCTCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000546512.5 |
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| CDS GCA 72 bp | ACAGCGTCCCTGCTCACACTGGGCAATGATGCCCCCTaGTCCTGTGCAAGTAGGGTAGCCACGTCTTCCTCC | + |
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Preference number: 6 (lower is better) Translates to: TASLLTLGNDAP*SCASRVATSSS Trigger: GGAGGAAGACGTGGCTACCCTACTTGCACAGGAGCAGGGGGCATCATTGCCCAGTGTGAGCAGGGACGCTGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000546512.5 |
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| CDS CCA 72 bp | CCAATGAGAAGTACAGTGCCCAGGTGTGCAGCGCCATaGTCCCCCATGTGGTCATCCTGGTGCCCCTCCCTT | + |
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Preference number: 6 (lower is better) Translates to: PMRSTVPRCAAP*SPMWSSWCPSL Trigger: AAGGGAGGGGCACCAGGATGACCACATGGGGGACCATGGCGCTGCACACCTGGGCACTGTACTTCTCATTGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000549354.6 |
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| CDS TCA 72 bp | CAAATTTATAACGGTGGTACAGGCCCAGCGAGCCTTTaGGGACCACCGGGTGCGCACCCAGCCTGTCCACCA | + |
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Preference number: 6 (lower is better) Translates to: QIYNGGTGPASL*GPPGAHPACPP Trigger: TGGTGGACAGGCTGGGTGCGCACCCGGTGGTCCTCAAAGGCTCGCTGGGCCTGTACCACCGTTATAAATTTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000549354.6 |
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| CDS CCA 72 bp | GGACCACCGGGTGCGCACCCAGCCTGTCCACCAGTGTaGAGCTGTTTGCTCACTCATCATCCTAGTCATCGT | + |
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Preference number: 6 (lower is better) Translates to: GPPGAHPACPPV*SCLLTHHPSHR Trigger: ACGATGACTAGGATGATGAGTGAGCAAACAGCTCCACACTGGTGGACAGGCTGGGTGCGCACCCGGTGGTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000549354.6 |
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| CDS CCA 72 bp | CCTCCGCATGCACCAGCATCCATCCTATCATCCACTTaGCCCTGGCAATTGATGGCAGCTGCTCCTCCTGCC | + |
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Preference number: 6 (lower is better) Translates to: PPHAPASILSST*PWQLMAAAPPA Trigger: GGCAGGAGGAGCAGCTGCCATCAATTGCCAGGGCCAAGTGGATGATAGGATGGATGCTGGTGCATGCGGAGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000549354.6 |
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| CDS TCA 72 bp | ACCACTTACAGCACCTCTGTGTCTCCAACTGCTCCATaGCACGGAGGTAGGCTGGCGGCACTTGGCACAGTG | + |
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Preference number: 6 (lower is better) Translates to: TTYSTSVSPTAP*HGGRLAALGTV Trigger: CACTGTGCCAAGTGCCGCCAGCCTACCTCCGTGTCATGGAGCAGTTGGAGACACAGAGGTGCTGTAAGTGGT 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000546512.5 ENST00000549131.1 |
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| CDS GCA 72 bp | TACGTCTCACTGCTCACACTGGGCAATGATGCCCCCTaGTCCTGTGCAAGTAGGGTAGCCACGTCTTCCTCC | + |
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Preference number: 6 (lower is better) Translates to: YVSLLTLGNDAP*SCASRVATSSS Trigger: GGAGGAAGACGTGGCTACCCTACTTGCACAGGAGCAGGGGGCATCATTGCCCAGTGTGAGCAGTGAGACGTA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000549354.6 ENST00000549718.5 |
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| CDS CAA 72 bp | TCCTCCGCATGCACCAGCATCCATCCTATCATCCACTaGGCCCTGGCAATTGATGGCAGCTGCTCCTCCTGC | + |
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Preference number: 6 (lower is better) Translates to: SSACTSIHPIIH*ALAIDGSCSSC Trigger: GCAGGAGGAGCAGCTGCCATCAATTGCCAGGGCCAAGTGGATGATAGGATGGATGCTGGTGCATGCGGAGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000549354.6 |
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| CDS TCA 72 bp | TTTCATCCGGGTCATGTCGAGGGTGGACTCTGTGTCTaGGAGGTCTCATGGTGTCCTGCCCCTCAGACTGGA | + |
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Preference number: 6 (lower is better) Translates to: FHPGHVEGGLCV*EVSWCPAPQTG Trigger: TCCAGTCTGAGGGGCAGGACACCATGAGACCTCTCAGACACAGAGTCCACCCTCGACATGACCCGGATGAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000547102.5 ENST00000549354.6 ENST00000552608.6 ENST00000552685.1 |
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| CDS GCA 72 bp | ACCCCTTCGTGCCAACCCCAGATGAGTGCTGTTTGCTaGACAGGCTCAGGACCTCATGCACCTGCTTCAAGA | + |
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Preference number: 6 (lower is better) Translates to: TPSCQPQMSAVC*TGSGPHAPASR Trigger: TCTTGAAGCAGGTGCATGAGGTCCTGAGCCTGTGCAGCAAACAGCACTCATCTGGGGTTGGCACGAAGGGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000549354.6 |
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| CDS CCA 72 bp | GAGGCGATCGGTAACTTTGTAAGCTGTCCACATCCTTaGGCCCTACAGCGTCCCTGCTCACACTGGGCAATG | + |
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Preference number: 6 (lower is better) Translates to: EAIGNFVSCPHP*ALQRPCSHWAM Trigger: CATTGCCCAGTGTGAGCAGGGACGCTGTAGGGCCCAAGGATGTGGACAGCTTACAAAGTTACCGATCGCCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546512.5 |
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| CDS GCA 72 bp | TTATTAGAGATGAGCGTTGCGTCTGCCTCCTCCGCATaGACCAGCATCCATCCTATCATCCACTTGGCCCTG | + |
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Preference number: 6 (lower is better) Translates to: LLEMSVASASSA*TSIHPIIHLAL Trigger: CAGGGCCAAGTGGATGATAGGATGGATGCTGGTGCATGCGGAGGAGGCAGACGCAACGCTCATCTCTAATAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000549354.6 |
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| CDS TCA 72 bp | CTTCAAGCTGAGTTTCAAGACACTTGCGTGAAGAGGTaGTGCTCTAGCCGCCTCTGGCTGGACTCTTGGTTC | + |
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Preference number: 6 (lower is better) Translates to: LQAEFQDTCVKR*CSSRLWLDSWF Trigger: GAACCAAGAGTCCAGCCAGAGGCGGCTAGAGCATCACCTCTTCACGCAAGTGTCTTGAAACTCAGCTTGAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000552608.6 |
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| CDS GCA 72 bp | CGCCAGGACTTAACTCTGCCAACTCTGGAGGTTTTGTaGCTTCGGTACATGCTAGCCATCCAGAACGTAGCT | + |
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Preference number: 6 (lower is better) Translates to: RQDLTLPTLEVL*LRYMLAIQNVA Trigger: AGCTACGTTCTGGATGGCTAGCATGTACCGAAGGCACAAAACCTCCAGAGTTGGCAGAGTTAAGTCCTGGCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000547102.5 ENST00000549354.6 ENST00000552608.6 ENST00000552685.1 |
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| CDS GCA 72 bp | ACAGGCTCAGGACCTCATGCACCTGCTTCAAGATCTTaGCTGGATTCTCCAATGAGAAGTACAGTGCCCAGG | + |
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Preference number: 6 (lower is better) Translates to: TGSGPHAPASRS*LDSPMRSTVPR Trigger: CCTGGGCACTGTACTTCTCATTGGAGAATCCAGGCAAGATCTTGAAGCAGGTGCATGAGGTCCTGAGCCTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000549354.6 |
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| CDS CAA 72 bp | GCACGCCAGGACTTAACTCTGCCAACTCTGGAGGTTTaGTGCCTTCGGTACATGCTAGCCATCCAGAACGTA | + |
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Preference number: 6 (lower is better) Translates to: ARQDLTLPTLEV*CLRYMLAIQNV Trigger: TACGTTCTGGATGGCTAGCATGTACCGAAGGCACAAAACCTCCAGAGTTGGCAGAGTTAAGTCCTGGCGTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000547102.5 ENST00000549354.6 ENST00000552608.6 ENST00000552685.1 |
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| CDS GCA 72 bp | GGAACAGACATCATTATTAGAGATGAGCGTTGCGTCTaGCTCCTCCGCATGCACCAGCATCCATCCTATCAT | + |
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Preference number: 6 (lower is better) Translates to: GTDIIIRDERCV*LLRMHQHPSYH Trigger: ATGATAGGATGGATGCTGGTGCATGCGGAGGAGGCAGACGCAACGCTCATCTCTAATAATGATGTCTGTTCC 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000549354.6 |
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