Pregenerated sensors for LINC00653 (Homo sapiens)
Ensembl gene IDs: ENSG00000273148Ensembl transcript IDs: ENST00000609087.1
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TGGTTCCAACCTGACAGCTACTCTGGGCTACAAAGAGCCCCTTCTTaGCAGATGACTGCCAGCTGCAGGCTAGATCAGACTGGTCTCTGG | + |
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Preference number: 5 (lower is better) Translates to: WFQPDSYSGLQRAPS*QMTASCRLDQTGLW Trigger: CCAGAGACCAGTCTGATCTAGCCTGCAGCTGGCAGTCATCTGTCAAGAAGGGGCTCTTTGTAGCCCAGAGTAGCTGTCAGGTTGGAACCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000609087.1 |
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| CDS GCA 90 bp | AGGATTGACCATGGTTCATCAAGGGTCAACTTGAAAGCTGAACCCTaGCAACTTTCCCTGAATCTCCTGACTATGGTGGAGGAGTGTGGA | + |
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Preference number: 5 (lower is better) Translates to: RIDHGSSRVNLKAEP*QLSLNLLTMVEECG Trigger: TCCACACTCCTCCACCATAGTCAGGAGATTCAGGGAAAGTTGGCAGGGTTCAGCTTTCAAGTTGACCCTTGATGAACCATGGTCAATCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000609087.1 |
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| CDS GCA 90 bp | ACATGCAAACAGGAACGAGTTGGCTACTTGAGGGTTGGTTCCTTGTaGATCTCAGTGAGTCTTGAAAAACCCCAGATCCGTCCTTCCTTC | + |
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Preference number: 5 (lower is better) Translates to: TCKQERVGYLRVGSL*ISVSLEKPQIRPSF Trigger: GAAGGAAGGACGGATCTGGGGTTTTTCAAGACTCACTGAGATGCACAAGGAACCAACCCTCAAGTAGCCAACTCGTTCCTGTTTGCATGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000609087.1 |
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| CDS GCA 90 bp | TCCCATAAAAGCGGTCCTGAGGTAGGGCTACAGTGGCTGAACTTCTaGTATGATAAGTATTCAGGGGTTTCCCAGGACACAGCATCAATG | + |
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Preference number: 5 (lower is better) Translates to: SHKSGPEVGLQWLNF*YDKYSGVSQDTASM Trigger: CATTGATGCTGTGTCCTGGGAAACCCCTGAATACTTATCATAGCAGAAGTTCAGCCACTGTAGCCCTACCTCAGGACCGCTTTTATGGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000609087.1 |
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| CDS GCA 90 bp | ACCTCTCCACCTAGCATAAATACCTACCTTTTCTCCTTCAAAGTATaGTTTATGGCCTCAGGTAGAGGCCTGCTTCCTGCCTGCAAGTTG | + |
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Preference number: 5 (lower is better) Translates to: TSPPSINTYLFSFKV*FMASGRGLLPACKL Trigger: CAACTTGCAGGCAGGAAGCAGGCCTCTACCTGAGGCCATAAAGCATACTTTGAAGGAGAAAAGGTAGGTATTTATGCTAGGTGGAGAGGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000609087.1 |
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| CDS CCA 90 bp | GGAATTATTCTTTCCCATAAAAGCGGTCCTGAGGTAGGGCTACAGTaGCTGAACTTCTGCTATGATAAGTATTCAGGGGTTTCCCAGGAC | + |
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Preference number: 5 (lower is better) Translates to: GIILSHKSGPEVGLQ*LNFCYDKYSGVSQD Trigger: GTCCTGGGAAACCCCTGAATACTTATCATAGCAGAAGTTCAGCCACTGTAGCCCTACCTCAGGACCGCTTTTATGGGAAAGAATAATTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000609087.1 |
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| CDS GCA 90 bp | ACCTTTTCTCCTTCAAAGTATGCTTTATGGCCTCAGGTAGAGGCCTaGTTCCTGCCTGCAAGTTGTAACCTCTTAGAAATAGTTATATTT | + |
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Preference number: 5 (lower is better) Translates to: TFSPSKYALWPQVEA*FLPASCNLLEIVIF Trigger: AAATATAACTATTTCTAAGAGGTTACAACTTGCAGGCAGGAAGCAGGCCTCTACCTGAGGCCATAAAGCATACTTTGAAGGAGAAAAGGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000609087.1 |
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| CDS CCA 90 bp | ATGCTTTCAATTTATTACAAGTACCAAAAGCAGCCACAACTCAAATaGCTCAAGCAGTTAAAGGAATTATTCTTTCCCATAAAAGCGGTC | + |
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Preference number: 5 (lower is better) Translates to: MLSIYYKYQKQPQLK*LKQLKELFFPIKAV Trigger: GACCGCTTTTATGGGAAAGAATAATTCCTTTAACTGCTTGAGCCATTTGAGTTGTGGCTGCTTTTGGTACTTGTAATAAATTGAAAGCAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000609087.1 |
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| CDS GCA 72 bp | CTCTGGGCTACAAAGAGCCCCTTCTTGACAGATGACTaGCAGCTGCAGGCTAGATCAGACTGGTCTCTGGAG | + |
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Preference number: 6 (lower is better) Translates to: LWATKSPFLTDD*QLQARSDWSLE Trigger: CTCCAGAGACCAGTCTGATCTAGCCTGCAGCTGGCAGTCATCTGTCAAGAAGGGGCTCTTTGTAGCCCAGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000609087.1 |
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| CDS TCA 72 bp | CCTGACAGCTACTCTGGGCTACAAAGAGCCCCTTCTTaGCAGATGACTGCCAGCTGCAGGCTAGATCAGACT | + |
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Preference number: 6 (lower is better) Translates to: PDSYSGLQRAPS*QMTASCRLDQT Trigger: AGTCTGATCTAGCCTGCAGCTGGCAGTCATCTGTCAAGAAGGGGCTCTTTGTAGCCCAGAGTAGCTGTCAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000609087.1 |
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| CDS GCA 72 bp | AGCGGTCCTGAGGTAGGGCTACAGTGGCTGAACTTCTaGTATGATAAGTATTCAGGGGTTTCCCAGGACACA | + |
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Preference number: 6 (lower is better) Translates to: SGPEVGLQWLNF*YDKYSGVSQDT Trigger: TGTGTCCTGGGAAACCCCTGAATACTTATCATAGCAGAAGTTCAGCCACTGTAGCCCTACCTCAGGACCGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000609087.1 |
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| CDS CAA 90 bp | GACACATGCAAACAGGAACGAGTTGGCTACTTGAGGGTTGGTTCCTaGTGCATCTCAGTGAGTCTTGAAAAACCCCAGATCCGTCCTTCC | + |
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Preference number: 6 (lower is better) Translates to: DTCKQERVGYLRVGS*CISVSLEKPQIRPS Trigger: GGAAGGACGGATCTGGGGTTTTTCAAGACTCACTGAGATGCACAAGGAACCAACCCTCAAGTAGCCAACTCGTTCCTGTTTGCATGTGTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000609087.1 |
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| CDS GCA 72 bp | CAGGAACGAGTTGGCTACTTGAGGGTTGGTTCCTTGTaGATCTCAGTGAGTCTTGAAAAACCCCAGATCCGT | + |
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Preference number: 6 (lower is better) Translates to: QERVGYLRVGSL*ISVSLEKPQIR Trigger: ACGGATCTGGGGTTTTTCAAGACTCACTGAGATGCACAAGGAACCAACCCTCAAGTAGCCAACTCGTTCCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000609087.1 |
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| CDS CCA 72 bp | CTTCACCTAACCGCCGATGCCCTCCTTTTGGTTTTATaGTTCCAACCTGACAGCTACTCTGGGCTACAAAGA | + |
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Preference number: 6 (lower is better) Translates to: LHLTADALLLVL*FQPDSYSGLQR Trigger: TCTTTGTAGCCCAGAGTAGCTGTCAGGTTGGAACCATAAAACCAAAAGGAGGGCATCGGCGGTTAGGTGAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000609087.1 |
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| CDS GCA 72 bp | CATGGTTCATCAAGGGTCAACTTGAAAGCTGAACCCTaGCAACTTTCCCTGAATCTCCTGACTATGGTGGAG | + |
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Preference number: 6 (lower is better) Translates to: HGSSRVNLKAEP*QLSLNLLTMVE Trigger: CTCCACCATAGTCAGGAGATTCAGGGAAAGTTGGCAGGGTTCAGCTTTCAAGTTGACCCTTGATGAACCATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000609087.1 |
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| CDS CAA 72 bp | TCTTCAGTGATTTCTCCCCAGTCTCATTGGCTGGGATaGGCTTTCACGCCTCTTAACAGGATTGACCATGGT | + |
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Preference number: 6 (lower is better) Translates to: SSVISPQSHWLG*AFTPLNRIDHG Trigger: ACCATGGTCAATCCTGTTAAGAGGCGTGAAAGCCAATCCCAGCCAATGAGACTGGGGAGAAATCACTGAAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000609087.1 |
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| CDS CAA 72 bp | TCAGTCGACACATGCAAACAGGAACGAGTTGGCTACTaGAGGGTTGGTTCCTTGTGCATCTCAGTGAGTCTT | + |
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Preference number: 6 (lower is better) Translates to: SVDTCKQERVGY*RVGSLCISVSL Trigger: AAGACTCACTGAGATGCACAAGGAACCAACCCTCAAGTAGCCAACTCGTTCCTGTTTGCATGTGTCGACTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000609087.1 |
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| CDS CAA 72 bp | ACTTCTTTTCTTCACCTAACCGCCGATGCCCTCCTTTaGGTTTTATGGTTCCAACCTGACAGCTACTCTGGG | + |
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Preference number: 6 (lower is better) Translates to: TSFLHLTADALL*VLWFQPDSYSG Trigger: CCCAGAGTAGCTGTCAGGTTGGAACCATAAAACCAAAAGGAGGGCATCGGCGGTTAGGTGAAGAAAAGAAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000609087.1 |
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| CDS CAA 90 bp | TCCACAAGTTCTTCAGTGATTTCTCCCCAGTCTCATTGGCTGGGATaGGCTTTCACGCCTCTTAACAGGATTGACCATGGTTCATCAAGG | + |
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Preference number: 6 (lower is better) Translates to: STSSSVISPQSHWLG*AFTPLNRIDHGSSR Trigger: CCTTGATGAACCATGGTCAATCCTGTTAAGAGGCGTGAAAGCCAATCCCAGCCAATGAGACTGGGGAGAAATCACTGAAGAACTTGTGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000609087.1 |
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| CDS CAA 90 bp | TTCACGCCTCTTAACAGGATTGACCATGGTTCATCAAGGGTCAACTaGAAAGCTGAACCCTGCCAACTTTCCCTGAATCTCCTGACTATG | + |
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Preference number: 6 (lower is better) Translates to: FTPLNRIDHGSSRVN*KAEPCQLSLNLLTM Trigger: CATAGTCAGGAGATTCAGGGAAAGTTGGCAGGGTTCAGCTTTCAAGTTGACCCTTGATGAACCATGGTCAATCCTGTTAAGAGGCGTGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000609087.1 |
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| CDS CCA 72 bp | CTTTCCCATAAAAGCGGTCCTGAGGTAGGGCTACAGTaGCTGAACTTCTGCTATGATAAGTATTCAGGGGTT | + |
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Preference number: 6 (lower is better) Translates to: LSHKSGPEVGLQ*LNFCYDKYSGV Trigger: AACCCCTGAATACTTATCATAGCAGAAGTTCAGCCACTGTAGCCCTACCTCAGGACCGCTTTTATGGGAAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000609087.1 |
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| CDS CAA 72 bp | AAACAGGAACGAGTTGGCTACTTGAGGGTTGGTTCCTaGTGCATCTCAGTGAGTCTTGAAAAACCCCAGATC | + |
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Preference number: 6 (lower is better) Translates to: KQERVGYLRVGS*CISVSLEKPQI Trigger: GATCTGGGGTTTTTCAAGACTCACTGAGATGCACAAGGAACCAACCCTCAAGTAGCCAACTCGTTCCTGTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000609087.1 |
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| CDS TCA 72 bp | TTTATCCAGAGGGTCTGTTTTCCACAAGTTCTTCAGTaGTTTCTCCCCAGTCTCATTGGCTGGGATTGGCTT | + |
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Preference number: 6 (lower is better) Translates to: FIQRVCFPQVLQ*FLPSLIGWDWL Trigger: AAGCCAATCCCAGCCAATGAGACTGGGGAGAAATCACTGAAGAACTTGTGGAAAACAGACCCTCTGGATAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000609087.1 |
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| CDS TCA 72 bp | AGCATCAATGCTAAAACTGGCAAAATCCCAATGGACTaGTCCCTTCAATGGATGACAGGACCCTCTATGGCT | + |
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Preference number: 6 (lower is better) Translates to: SINAKTGKIPMD*SLQWMTGPSMA Trigger: AGCCATAGAGGGTCCTGTCATCCATTGAAGGGATCAGTCCATTGGGATTTTGCCAGTTTTAGCATTGATGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000609087.1 |
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| CDS CAA 72 bp | CTTAACAGGATTGACCATGGTTCATCAAGGGTCAACTaGAAAGCTGAACCCTGCCAACTTTCCCTGAATCTC | + |
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Preference number: 6 (lower is better) Translates to: LNRIDHGSSRVN*KAEPCQLSLNL Trigger: GAGATTCAGGGAAAGTTGGCAGGGTTCAGCTTTCAAGTTGACCCTTGATGAACCATGGTCAATCCTGTTAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000609087.1 |
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| CDS CAA 72 bp | TCAGACTGGTCTCTGGAGATTGCACAGATCGTGAACTaGTGCCCTATGTTTCACCTTTTTGCATTTACAGCC | + |
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Preference number: 6 (lower is better) Translates to: SDWSLEIAQIVN*CPMFHLFAFTA Trigger: GGCTGTAAATGCAAAAAGGTGAAACATAGGGCACAAGTTCACGATCTGTGCAATCTCCAGAGACCAGTCTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000609087.1 |
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| CDS TCA 72 bp | GTAAGCCCAGTGCGTGTCTCTAACGAGTTTCCTCCATaGATTTTCATAGGCTTCTCCTGTATGCTACAGAAT | + |
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Preference number: 6 (lower is better) Translates to: VSPVRVSNEFPP*IFIGFSCMLQN Trigger: ATTCTGTAGCATACAGGAGAAGCCTATGAAAATTCATGGAGGAAACTCGTTAGAGACACGCACTGGGCTTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000609087.1 |
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| CDS TCA 72 bp | CTGATCCCTTCAATGGATGACAGGACCCTCTATGGCTaGAAGACTCTAAAGTTCTTAGTTCTTAGCTGTGAC | + |
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Preference number: 6 (lower is better) Translates to: LIPSMDDRTLYG*KTLKFLVLSCD Trigger: GTCACAGCTAAGAACTAAGAACTTTAGAGTCTTTCAGCCATAGAGGGTCCTGTCATCCATTGAAGGGATCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000609087.1 |
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| CDS TCA 72 bp | CTAGATCAGACTGGTCTCTGGAGATTGCACAGATCGTaGACTTGTGCCCTATGTTTCACCTTTTTGCATTTA | + |
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Preference number: 6 (lower is better) Translates to: LDQTGLWRLHRS*TCALCFTFLHL Trigger: TAAATGCAAAAAGGTGAAACATAGGGCACAAGTTCACGATCTGTGCAATCTCCAGAGACCAGTCTGATCTAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000609087.1 |
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