Pregenerated sensors for LINC00645 (Homo sapiens)
Ensembl gene IDs: ENSG00000258548Ensembl transcript IDs: ENST00000555350.1, ENST00000557359.6, ENST00000557399.1, ENST00000662039.1, ENST00000662633.1, ENST00000663380.1, ENST00000669384.1
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TCGTCCAATTGCTCTAAACAGACTGTGGAGGATTCACCACCAGACTaGATAGCAACAGCCTGGGCTTCAGAGTCAGCTACTCCTCTGTCC | + |
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Preference number: 5 (lower is better) Translates to: SSNCSKQTVEDSPPD*IATAWASESATPLS Trigger: GGACAGAGGAGTAGCTGACTCTGAAGCCCAGGCTGTTGCTATCCAGTCTGGTGGTGAATCCTCCACAGTCTGTTTAGAGCAATTGGACGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000557359.6 ENST00000662039.1 ENST00000663380.1 |
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| CDS GCA 90 bp | GGCCTAGAGGGAGGGGGCTTCTATAGCCTTAAACAGCAGGGTATTTaGAGTGAAAAACAGATCAGGCCCAGTGGAATGCCAAATGAGGGA | + |
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Preference number: 5 (lower is better) Translates to: GLEGGGFYSLKQQGI*SEKQIRPSGMPNEG Trigger: TCCCTCATTTGGCATTCCACTGGGCCTGATCTGTTTTTCACTGCAAATACCCTGCTGTTTAAGGCTATAGAAGCCCCCTCCCTCTAGGCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000662039.1 |
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| CDS TCA 90 bp | AGAAAGTGCCAGGAAAAGACTGGTGAAATGGGGGATGAAGGTACATaGGATGGCTCATTGATACAAGCAAAGCCTTGGTGGCTCTGCGCT | + |
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Preference number: 5 (lower is better) Translates to: RKCQEKTGEMGDEGT*DGSLIQAKPWWLCA Trigger: AGCGCAGAGCCACCAAGGCTTTGCTTGTATCAATGAGCCATCTCATGTACCTTCATCCCCCATTTCACCAGTCTTTTCCTGGCACTTTCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000557359.6 ENST00000557399.1 ENST00000663380.1 ENST00000669384.1 |
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| CDS TCA 90 bp | CTGTGGCCCATGCGTAGGCCTCATCCTGATGCGTTGAATTATTATTaGTGGCTGAGGCAGTTCTGCTCTGTTGGTGAACCAATAATGTCA | + |
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Preference number: 5 (lower is better) Translates to: LWPMRRPHPDALNYY*WLRQFCSVGEPIMS Trigger: TGACATTATTGGTTCACCAACAGAGCAGAACTGCCTCAGCCATCAATAATAATTCAACGCATCAGGATGAGGCCTACGCATGGGCCACAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000555350.1 ENST00000557359.6 ENST00000557399.1 ENST00000662633.1 ENST00000669384.1 |
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| CDS TCA 90 bp | GGCAAGAGAAAGAGTCCAGGTCTTTTACCTAAATTGCACACCAATTaGGCTCATCTGCTTATTCTCTACACACTCAGGCTAGGGAAAAAG | + |
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Preference number: 5 (lower is better) Translates to: GKRKSPGLLPKLHTN*AHLLILYTLRLGKK Trigger: CTTTTTCCCTAGCCTGAGTGTGTAGAGAATAAGCAGATGAGCTCAATTGGTGTGCAATTTAGGTAAAAGACCTGGACTCTTTCTCTTGCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000557359.6 ENST00000557399.1 ENST00000663380.1 ENST00000669384.1 |
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| CDS TCA 90 bp | TGCGTTGAATTATTATTGATGGCTGAGGCAGTTCTGCTCTGTTGGTaGACCAATAATGTCAAGGCACCACGGTTTCTGAATTTTGGAGAA | + |
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Preference number: 5 (lower is better) Translates to: CVELLLMAEAVLLCW*TNNVKAPRFLNFGE Trigger: TTCTCCAAAATTCAGAAACCGTGGTGCCTTGACATTATTGGTTCACCAACAGAGCAGAACTGCCTCAGCCATCAATAATAATTCAACGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000557359.6 ENST00000669384.1 |
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| CDS TCA 90 bp | TGCGTTGAATTATTATTGATGGCTGAGGCAGTTCTGCTCTGTTGGTaGACCAATAATGTCAAGGCACCACCTGCAAGATTAATTATAGGA | + |
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Preference number: 5 (lower is better) Translates to: CVELLLMAEAVLLCW*TNNVKAPPARLIIG Trigger: TCCTATAATTAATCTTGCAGGTGGTGCCTTGACATTATTGGTTCACCAACAGAGCAGAACTGCCTCAGCCATCAATAATAATTCAACGCA 41% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000555350.1 ENST00000662633.1 |
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| CDS TCA 90 bp | AAGTGGGCACATTTCAAAACTCAATGCTTAAACTATAGCTTGATGTaGAAAAGTAGAGACAAATTTGCCCATGCTACATCAAAGTGTAAG | + |
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Preference number: 5 (lower is better) Translates to: KWAHFKTQCLNYSLM*KSRDKFAHATSKCK Trigger: CTTACACTTTGATGTAGCATGGGCAAATTTGTCTCTACTTTTTCACATCAAGCTATAGTTTAAGCATTGAGTTTTGAAATGTGCCCACTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000557359.6 ENST00000557399.1 ENST00000663380.1 ENST00000669384.1 |
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| CDS GCA 72 bp | GGAGGGGGCTTCTATAGCCTTAAACAGCAGGGTATTTaGAGTGAAAAACAGATCAGGCCCAGTGGAATGCCA | + |
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Preference number: 6 (lower is better) Translates to: GGGFYSLKQQGI*SEKQIRPSGMP Trigger: TGGCATTCCACTGGGCCTGATCTGTTTTTCACTGCAAATACCCTGCTGTTTAAGGCTATAGAAGCCCCCTCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000662039.1 |
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| CDS TCA 72 bp | GTGAAATGGGGGATGAAGGTACATGAGATGGCTCATTaGTACAAGCAAAGCCTTGGTGGCTCTGCGCTGAAT | + |
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Preference number: 6 (lower is better) Translates to: VKWGMKVHEMAH*YKQSLGGSALN Trigger: ATTCAGCGCAGAGCCACCAAGGCTTTGCTTGTATCAATGAGCCATCTCATGTACCTTCATCCCCCATTTCAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000557359.6 ENST00000557399.1 ENST00000663380.1 ENST00000669384.1 |
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| CDS TCA 72 bp | ATGCGTAGGCCTCATCCTGATGCGTTGAATTATTATTaGTGGCTGAGGCAGTTCTGCTCTGTTGGTGAACCA | + |
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Preference number: 6 (lower is better) Translates to: MRRPHPDALNYY*WLRQFCSVGEP Trigger: TGGTTCACCAACAGAGCAGAACTGCCTCAGCCATCAATAATAATTCAACGCATCAGGATGAGGCCTACGCAT 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000555350.1 ENST00000557359.6 ENST00000557399.1 ENST00000662633.1 ENST00000669384.1 |
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| CDS TCA 72 bp | CAGGAAAAGACTGGTGAAATGGGGGATGAAGGTACATaGGATGGCTCATTGATACAAGCAAAGCCTTGGTGG | + |
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Preference number: 6 (lower is better) Translates to: QEKTGEMGDEGT*DGSLIQAKPWW Trigger: CCACCAAGGCTTTGCTTGTATCAATGAGCCATCTCATGTACCTTCATCCCCCATTTCACCAGTCTTTTCCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000557359.6 ENST00000557399.1 ENST00000663380.1 ENST00000669384.1 |
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| CDS TCA 72 bp | TTATTATTGATGGCTGAGGCAGTTCTGCTCTGTTGGTaGACCAATAATGTCAAGGCACCACGGTTTCTGAAT | + |
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Preference number: 6 (lower is better) Translates to: LLLMAEAVLLCW*TNNVKAPRFLN Trigger: ATTCAGAAACCGTGGTGCCTTGACATTATTGGTTCACCAACAGAGCAGAACTGCCTCAGCCATCAATAATAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000557359.6 ENST00000669384.1 |
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| CDS TCA 72 bp | TTATTATTGATGGCTGAGGCAGTTCTGCTCTGTTGGTaGACCAATAATGTCAAGGCACCACCTCTGTTTACA | + |
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Preference number: 6 (lower is better) Translates to: LLLMAEAVLLCW*TNNVKAPPLFT Trigger: TGTAAACAGAGGTGGTGCCTTGACATTATTGGTTCACCAACAGAGCAGAACTGCCTCAGCCATCAATAATAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000557399.1 |
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| CDS TCA 72 bp | TTATTATTGATGGCTGAGGCAGTTCTGCTCTGTTGGTaGACCAATAATGTCAAGGCACCACCTGCAAGATTA | + |
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Preference number: 6 (lower is better) Translates to: LLLMAEAVLLCW*TNNVKAPPARL Trigger: TAATCTTGCAGGTGGTGCCTTGACATTATTGGTTCACCAACAGAGCAGAACTGCCTCAGCCATCAATAATAA 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000555350.1 ENST00000662633.1 |
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| CDS GCA 72 bp | CAAGGCACCACCTCTGTTTACATTGTAACTGCTCCCTaGTATAACTGTCTTAAAGACTTCCTGGTTTCTGAA | + |
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Preference number: 6 (lower is better) Translates to: QGTTSVYIVTAP*YNCLKDFLVSE Trigger: TTCAGAAACCAGGAAGTCTTTAAGACAGTTATAGCAGGGAGCAGTTACAATGTAAACAGAGGTGGTGCCTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000557399.1 |
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| CDS CCA 72 bp | ATACTTGATGAAGGTATGCACAGTTCCATCACCAGATaGGTTTTAGTGGAAGCAAACATGGGGAGAGAATGT | + |
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Preference number: 6 (lower is better) Translates to: ILDEGMHSSITR*VLVEANMGREC Trigger: ACATTCTCTCCCCATGTTTGCTTCCACTAAAACCCATCTGGTGATGGAACTGTGCATACCTTCATCAAGTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000557359.6 ENST00000557399.1 ENST00000663380.1 ENST00000669384.1 |
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| CDS CAA 72 bp | ACTAGCCGTTTCGGTGTATTTGTACCCATCTTTGATTaGGAGTGTCTGACCTTGATCTACTTCTATCCCTCA | + |
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Preference number: 6 (lower is better) Translates to: TSRFGVFVPIFD*ECLTLIYFYPS Trigger: TGAGGGATAGAAGTAGATCAAGGTCAGACACTCCAAATCAAAGATGGGTACAAATACACCGAAACGGCTAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000662039.1 |
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| CDS CAA 90 bp | CTTTGTTTTACTAGCCGTTTCGGTGTATTTGTACCCATCTTTGATTaGGAGTGTCTGACCTTGATCTACTTCTATCCCTCAAAACCAGCC | + |
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Preference number: 6 (lower is better) Translates to: LCFTSRFGVFVPIFD*ECLTLIYFYPSKPA Trigger: GGCTGGTTTTGAGGGATAGAAGTAGATCAAGGTCAGACACTCCAAATCAAAGATGGGTACAAATACACCGAAACGGCTAGTAAAACAAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000662039.1 |
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| CDS CCA 72 bp | CAATATTCTTCAGGCTATAGGTGTCCATACATTTCCTaGATCTTCATCTCTTACCACAGAATGTGGAGTTGG | + |
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Preference number: 6 (lower is better) Translates to: QYSSGYRCPYIS*IFISYHRMWSW Trigger: CCAACTCCACATTCTGTGGTAAGAGATGAAGATCCAGGAAATGTATGGACACCTATAGCCTGAAGAATATTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000555350.1 ENST00000557359.6 ENST00000557399.1 ENST00000662633.1 ENST00000663380.1 ENST00000669384.1 |
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| CDS CAA 72 bp | GTATTTGTACCCATCTTTGATTTGGAGTGTCTGACCTaGATCTACTTCTATCCCTCAAAACCAGCCCTTACA | + |
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Preference number: 6 (lower is better) Translates to: VFVPIFDLECLT*IYFYPSKPALT Trigger: TGTAAGGGCTGGTTTTGAGGGATAGAAGTAGATCAAGGTCAGACACTCCAAATCAAAGATGGGTACAAATAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000662039.1 |
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| CDS CCA 72 bp | CTGCTTATTCTCTACACACTCAGGCTAGGGAAAAAGTaGGCACATTTCAAAACTCAATGCTTAAACTATAGC | + |
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Preference number: 6 (lower is better) Translates to: LLILYTLRLGKK*AHFKTQCLNYS Trigger: GCTATAGTTTAAGCATTGAGTTTTGAAATGTGCCCACTTTTTCCCTAGCCTGAGTGTGTAGAGAATAAGCAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000557359.6 ENST00000557399.1 ENST00000663380.1 ENST00000669384.1 |
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| CDS TCA 72 bp | CTTTGCCTGATTATTTGCATAAATTGCAGCAAGAATTaGTTGCCATATAGGCTCTTTCTAAGTTGGCTTTTC | + |
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Preference number: 6 (lower is better) Translates to: LCLIICINCSKN*LPYRLFLSWLF Trigger: GAAAAGCCAACTTAGAAAGAGCCTATATGGCAATCAATTCTTGCTGCAATTTATGCAAATAATCAGGCAAAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000662039.1 |
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| CDS CAA 72 bp | TACTTGTTTAGCATCAAATTTCCAGTTTACAACAAATaGGAAACAACCAGGATGTCTCTAGCTAGTAACCTA | + |
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Preference number: 6 (lower is better) Translates to: YLFSIKFPVYNK*ETTRMSLASNL Trigger: TAGGTTACTAGCTAGAGACATCCTGGTTGTTTCCAATTTGTTGTAAACTGGAAATTTGATGCTAAACAAGTA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000557359.6 ENST00000557399.1 ENST00000663380.1 ENST00000669384.1 |
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| CDS CAA 72 bp | GTCTATACAATATGGCATTGTAAATTGGTGTCACTTTaGCACAGGAATGTGGTAATAACGGAGCAAAATTTA | + |
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Preference number: 6 (lower is better) Translates to: VYTIWHCKLVSL*HRNVVITEQNL Trigger: TAAATTTTGCTCCGTTATTACCACATTCCTGTGCAAAAGTGACACCAATTTACAATGCCATATTGTATAGAC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000557359.6 ENST00000557399.1 ENST00000663380.1 ENST00000669384.1 |
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