Pregenerated sensors for LINC00643 (Homo sapiens)
Ensembl gene IDs: ENSG00000186369Ensembl transcript IDs: ENST00000334389.5, ENST00000553426.1, ENST00000555518.5, ENST00000555934.1, ENST00000623219.3, ENST00000623985.3, ENST00000637212.1
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CTCGGCGGGCAGCCCTGGCTCCTGCAGGTCCGTCCCTCCAGTCTCTaGAGCGCCTCTCACTCCGGGTTCGCAGCGCTAGGCGGGCGCGCA | + |
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Preference number: 5 (lower is better) Translates to: LGGQPWLLQVRPSSL*SASHSGFAALGGRA Trigger: TGCGCGCCCGCCTAGCGCTGCGAACCCGGAGTGAGAGGCGCTTCAGAGACTGGAGGGACGGACCTGCAGGAGCCAGGGCTGCCCGCCGAG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000553426.1 ENST00000623219.3 ENST00000623985.3 ENST00000637212.1 |
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| CDS GCA 90 bp | AGCGGCAGTAGCGGCAACTGCAGCTCGGCGGGCAGCCCTGGCTCCTaGAGGTCCGTCCCTCCAGTCTCTGAAGCGCCTCTCACTCCGGGT | + |
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Preference number: 5 (lower is better) Translates to: SGSSGNCSSAGSPGS*RSVPPVSEAPLTPG Trigger: ACCCGGAGTGAGAGGCGCTTCAGAGACTGGAGGGACGGACCTGCAGGAGCCAGGGCTGCCCGCCGAGCTGCAGTTGCCGCTACTGCCGCT 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000553426.1 ENST00000623219.3 ENST00000623985.3 ENST00000637212.1 |
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| CDS GCA 90 bp | GCTGTCACTCTTCAGTCGGGCGCTGACAGCGGCAGTAGCGGCAACTaGAGCTCGGCGGGCAGCCCTGGCTCCTGCAGGTCCGTCCCTCCA | + |
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Preference number: 5 (lower is better) Translates to: AVTLQSGADSGSSGN*SSAGSPGSCRSVPP Trigger: TGGAGGGACGGACCTGCAGGAGCCAGGGCTGCCCGCCGAGCTGCAGTTGCCGCTACTGCCGCTGTCAGCGCCCGACTGAAGAGTGACAGC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000553426.1 ENST00000623219.3 ENST00000623985.3 ENST00000637212.1 |
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| CDS CCA 90 bp | GGGTTCGCAGCGCTAGGCGGGCGCGCAGCTGTTCTCAGCTCGCATTaGACCACAGGGAGCAGATGTTACCCGGTTGCTAGGAGCGTTGCT | + |
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Preference number: 5 (lower is better) Translates to: GFAALGGRAAVLSSH*TTGSRCYPVARSVA Trigger: AGCAACGCTCCTAGCAACCGGGTAACATCTGCTCCCTGTGGTCCAATGCGAGCTGAGAACAGCTGCGCGCCCGCCTAGCGCTGCGAACCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553426.1 |
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| CDS TCA 90 bp | GGGAGCAGATGTTACCCGGTTGCTAGGAGCGTTGCTAGGAGGCGATaGCGCCCCTCCACAGCTCGGGAGCAACTTTCCTGTAGGTCGAGT | + |
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Preference number: 5 (lower is better) Translates to: GSRCYPVARSVARRR*RPSTAREQLSCRSS Trigger: ACTCGACCTACAGGAAAGTTGCTCCCGAGCTGTGGAGGGGCGTCATCGCCTCCTAGCAACGCTCCTAGCAACCGGGTAACATCTGCTCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553426.1 |
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| CDS TCA 90 bp | CGCCGGCGGGGGCTGCCAAAGCTATCTTCGGAGAGAGAATCGCACTaGAGAAGAGACACATCACTTCCCTGGTTCCCTGTAGAGTCATGC | + |
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Preference number: 5 (lower is better) Translates to: RRRGLPKLSSERESH*RRDTSLPWFPVESC Trigger: GCATGACTCTACAGGGAACCAGGGAAGTGATGTGTCTCTTCTTCAGTGCGATTCTCTCTCCGAAGATAGCTTTGGCAGCCCCCGCCGGCG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000553426.1 |
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| CDS TCA 90 bp | AGCATTTCTCACAGCCTCAGGCTCATGAATGGTTACCTGAGATCTTaGAACAAGGAGACAGACACAAATAACATCGGGCGAGTCAGGACT | + |
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Preference number: 5 (lower is better) Translates to: SISHSLRLMNGYLRS*NKETDTNNIGRVRT Trigger: AGTCCTGACTCGCCCGATGTTATTTGTGTCTGTCTCCTTGTTTCAAGATCTCAGGTAACCATTCATGAGCCTGAGGCTGTGAGAAATGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000334389.5 |
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| CDS GCA 90 bp | TGTATTTCTAGAACAGTTTCAGAAAATCTGGTGAGAGTTCCCCTTTaGACAGCGAGCATTTCTCACAGCCTCAGGCTCATGAATGGTTAC | + |
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Preference number: 5 (lower is better) Translates to: CISRTVSENLVRVPL*TASISHSLRLMNGY Trigger: GTAACCATTCATGAGCCTGAGGCTGTGAGAAATGCTCGCTGTGCAAAGGGGAACTCTCACCAGATTTTCTGAAACTGTTCTAGAAATACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000334389.5 ENST00000555518.5 ENST00000623219.3 ENST00000623985.3 |
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| CDS CCA 90 bp | GTGTCTTTGCCCCATCTCGAATTGCTACTAATGGTAAAAGGAGAATaGTGTCAATTATTTGGCACAATGCTTGACAAGTCAAAGCACTTC | + |
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Preference number: 5 (lower is better) Translates to: VSLPHLELLLMVKGE*CQLFGTMLDKSKHF Trigger: GAAGTGCTTTGACTTGTCAAGCATTGTGCCAAATAATTGACACCATTCTCCTTTTACCATTAGTAGCAATTCGAGATGGGGCAAAGACAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000334389.5 |
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| CDS TCA 90 bp | ACTAATGGTAAAAGGAGAATGGTGTCAATTATTTGGCACAATGCTTaGCAAGTCAAAGCACTTCAGAAAGAACCAGCCCTTCCTCATATC | + |
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Preference number: 5 (lower is better) Translates to: TNGKRRMVSIIWHNA*QVKALQKEPALPHI Trigger: GATATGAGGAAGGGCTGGTTCTTTCTGAAGTGCTTTGACTTGTCAAGCATTGTGCCAAATAATTGACACCATTCTCCTTTTACCATTAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000334389.5 |
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| CDS GCA 90 bp | GCATTCCTGTACCATAAACTTCAGCCGTTTTCTTGTATCAGAATATaGAGTCTTATAACAGGGAGCTTCTTTAAAGTATTCATAGCTCTC | + |
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Preference number: 5 (lower is better) Translates to: AFLYHKLQPFSCIRI*SLITGSFFKVFIAL Trigger: GAGAGCTATGAATACTTTAAAGAAGCTCCCTGTTATAAGACTGCATATTCTGATACAAGAAAACGGCTGAAGTTTATGGTACAGGAATGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000334389.5 ENST00000555934.1 ENST00000623219.3 ENST00000623985.3 ENST00000637212.1 |
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| CDS GCA 90 bp | TCTTTGGAATGCACATTCTTTCTCACAAGATTTGAAATCGCCAAATaGTACTTTTTCTTTGAAGACAGCATTTCTTTAAAGGGCCATGTT | + |
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Preference number: 5 (lower is better) Translates to: SLECTFFLTRFEIAK*YFFFEDSISLKGHV Trigger: AACATGGCCCTTTAAAGAAATGCTGTCTTCAAAGAAAAAGTAGCATTTGGCGATTTCAAATCTTGTGAGAAAGAATGTGCATTCCAAAGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000555518.5 |
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| CDS GCA 72 bp | CTTCAGTCGGGCGCTGACAGCGGCAGTAGCGGCAACTaGAGCTCGGCGGGCAGCCCTGGCTCCTGCAGGTCC | + |
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Preference number: 6 (lower is better) Translates to: LQSGADSGSSGN*SSAGSPGSCRS Trigger: GGACCTGCAGGAGCCAGGGCTGCCCGCCGAGCTGCAGTTGCCGCTACTGCCGCTGTCAGCGCCCGACTGAAG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000553426.1 ENST00000623219.3 ENST00000623985.3 ENST00000637212.1 |
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| CDS TCA 72 bp | CAGCCCTGGCTCCTGCAGGTCCGTCCCTCCAGTCTCTaGAGCGCCTCTCACTCCGGGTTCGCAGCGCTAGGC | + |
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Preference number: 6 (lower is better) Translates to: QPWLLQVRPSSL*SASHSGFAALG Trigger: GCCTAGCGCTGCGAACCCGGAGTGAGAGGCGCTTCAGAGACTGGAGGGACGGACCTGCAGGAGCCAGGGCTG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000553426.1 ENST00000623219.3 ENST00000623985.3 ENST00000637212.1 |
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| CDS CCA 72 bp | GCGCTAGGCGGGCGCGCAGCTGTTCTCAGCTCGCATTaGACCACAGGGAGCAGATGTTACCCGGTTGCTAGG | + |
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Preference number: 6 (lower is better) Translates to: ALGGRAAVLSSH*TTGSRCYPVAR Trigger: CCTAGCAACCGGGTAACATCTGCTCCCTGTGGTCCAATGCGAGCTGAGAACAGCTGCGCGCCCGCCTAGCGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553426.1 |
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| CDS CAA 72 bp | CCACAGGGAGCAGATGTTACCCGGTTGCTAGGAGCGTaGCTAGGAGGCGATGACGCCCCTCCACAGCTCGGG | + |
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Preference number: 6 (lower is better) Translates to: PQGADVTRLLGA*LGGDDAPPQLG Trigger: CCCGAGCTGTGGAGGGGCGTCATCGCCTCCTAGCAACGCTCCTAGCAACCGGGTAACATCTGCTCCCTGTGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553426.1 |
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| CDS CAA 72 bp | GCTCGCATTGGACCACAGGGAGCAGATGTTACCCGGTaGCTAGGAGCGTTGCTAGGAGGCGATGACGCCCCT | + |
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Preference number: 6 (lower is better) Translates to: ARIGPQGADVTR*LGALLGGDDAP Trigger: AGGGGCGTCATCGCCTCCTAGCAACGCTCCTAGCAACCGGGTAACATCTGCTCCCTGTGGTCCAATGCGAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553426.1 |
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| CDS CAA 90 bp | CGCATTGGACCACAGGGAGCAGATGTTACCCGGTTGCTAGGAGCGTaGCTAGGAGGCGATGACGCCCCTCCACAGCTCGGGAGCAACTTT | + |
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Preference number: 6 (lower is better) Translates to: RIGPQGADVTRLLGA*LGGDDAPPQLGSNF Trigger: AAAGTTGCTCCCGAGCTGTGGAGGGGCGTCATCGCCTCCTAGCAACGCTCCTAGCAACCGGGTAACATCTGCTCCCTGTGGTCCAATGCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553426.1 |
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| CDS CAA 90 bp | CTGTTCTCAGCTCGCATTGGACCACAGGGAGCAGATGTTACCCGGTaGCTAGGAGCGTTGCTAGGAGGCGATGACGCCCCTCCACAGCTC | + |
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Preference number: 6 (lower is better) Translates to: LFSARIGPQGADVTR*LGALLGGDDAPPQL Trigger: GAGCTGTGGAGGGGCGTCATCGCCTCCTAGCAACGCTCCTAGCAACCGGGTAACATCTGCTCCCTGTGGTCCAATGCGAGCTGAGAACAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553426.1 |
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| CDS TCA 72 bp | TGTTACCCGGTTGCTAGGAGCGTTGCTAGGAGGCGATaGCGCCCCTCCACAGCTCGGGAGCAACTTTCCTGT | + |
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Preference number: 6 (lower is better) Translates to: CYPVARSVARRR*RPSTAREQLSC Trigger: ACAGGAAAGTTGCTCCCGAGCTGTGGAGGGGCGTCATCGCCTCCTAGCAACGCTCCTAGCAACCGGGTAACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553426.1 |
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| CDS TCA 72 bp | GGGCTGCCAAAGCTATCTTCGGAGAGAGAATCGCACTaGAGAAGAGACACATCACTTCCCTGGTTCCCTGTA | + |
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Preference number: 6 (lower is better) Translates to: GLPKLSSERESH*RRDTSLPWFPV Trigger: TACAGGGAACCAGGGAAGTGATGTGTCTCTTCTTCAGTGCGATTCTCTCTCCGAAGATAGCTTTGGCAGCCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553426.1 |
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| CDS TCA 72 bp | CACAGCCTCAGGCTCATGAATGGTTACCTGAGATCTTaGAACAAGGAGACAGACACAAATAACATCGGGCGA | + |
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Preference number: 6 (lower is better) Translates to: HSLRLMNGYLRS*NKETDTNNIGR Trigger: TCGCCCGATGTTATTTGTGTCTGTCTCCTTGTTTCAAGATCTCAGGTAACCATTCATGAGCCTGAGGCTGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000334389.5 |
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| CDS CAA 72 bp | GGGTCTTCAAGAAACCTGAGCTTCTCCAGAGAAAGTTaGAGAATGCAAGTTCTGTCCTCAGGTAATATCAGG | + |
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Preference number: 6 (lower is better) Translates to: GSSRNLSFSRES*RMQVLSSGNIR Trigger: CCTGATATTACCTGAGGACAGAACTTGCATTCTCAAACTTTCTCTGGAGAAGCTCAGGTTTCTTGAAGACCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000334389.5 ENST00000555934.1 ENST00000623219.3 ENST00000623985.3 ENST00000637212.1 |
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| CDS CAA 72 bp | ATAGCATTAGGAGAAATACCTAATGTAGATGACAGGTaGATGGGTGCAGCAAACCACCATGGCACGTGTATA | + |
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Preference number: 6 (lower is better) Translates to: IALGEIPNVDDR*MGAANHHGTCI Trigger: TATACACGTGCCATGGTGGTTTGCTGCACCCATCAACCTGTCATCTACATTAGGTATTTCTCCTAATGCTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000334389.5 |
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| CDS CAA 72 bp | CTGGTTGTTACATTCAGCAGTTTAGTTGCAGTGTCTTaGCCCCATCTCGAATTGCTACTAATGGTAAAAGGA | + |
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Preference number: 6 (lower is better) Translates to: LVVTFSSLVAVS*PHLELLLMVKG Trigger: TCCTTTTACCATTAGTAGCAATTCGAGATGGGGCAAAGACACTGCAACTAAACTGCTGAATGTAACAACCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000334389.5 |
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| CDS CAA 90 bp | TGGAGTAATCTGGTTGTTACATTCAGCAGTTTAGTTGCAGTGTCTTaGCCCCATCTCGAATTGCTACTAATGGTAAAAGGAGAATGGTGT | + |
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Preference number: 6 (lower is better) Translates to: WSNLVVTFSSLVAVS*PHLELLLMVKGEWC Trigger: ACACCATTCTCCTTTTACCATTAGTAGCAATTCGAGATGGGGCAAAGACACTGCAACTAAACTGCTGAATGTAACAACCAGATTACTCCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000334389.5 |
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| CDS CAA 90 bp | AGTAACAAACCAGCAGTTAGCTCAAAACACGAACCCCGTCTTTCTTaGGAATGCACATTCTTTCTCACAAGATTTGAAATCGCCAAATGC | + |
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Preference number: 6 (lower is better) Translates to: SNKPAVSSKHEPRLS*ECTFFLTRFEIAKC Trigger: GCATTTGGCGATTTCAAATCTTGTGAGAAAGAATGTGCATTCCAAAGAAAGACGGGGTTCGTGTTTTGAGCTAACTGCTGGTTTGTTACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000555518.5 |
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| CDS CAA 90 bp | GTTACATTCAGCAGTTTAGTTGCAGTGTCTTTGCCCCATCTCGAATaGCTACTAATGGTAAAAGGAGAATGGTGTCAATTATTTGGCACA | + |
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Preference number: 6 (lower is better) Translates to: VTFSSLVAVSLPHLE*LLMVKGEWCQLFGT Trigger: TGTGCCAAATAATTGACACCATTCTCCTTTTACCATTAGTAGCAATTCGAGATGGGGCAAAGACACTGCAACTAAACTGCTGAATGTAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000334389.5 |
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| CDS TCA 72 bp | AAAAGGAGAATGGTGTCAATTATTTGGCACAATGCTTaGCAAGTCAAAGCACTTCAGAAAGAACCAGCCCTT | + |
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Preference number: 6 (lower is better) Translates to: KRRMVSIIWHNA*QVKALQKEPAL Trigger: AAGGGCTGGTTCTTTCTGAAGTGCTTTGACTTGTCAAGCATTGTGCCAAATAATTGACACCATTCTCCTTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000334389.5 |
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| CDS CCA 72 bp | CCCCATCTCGAATTGCTACTAATGGTAAAAGGAGAATaGTGTCAATTATTTGGCACAATGCTTGACAAGTCA | + |
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Preference number: 6 (lower is better) Translates to: PHLELLLMVKGE*CQLFGTMLDKS Trigger: TGACTTGTCAAGCATTGTGCCAAATAATTGACACCATTCTCCTTTTACCATTAGTAGCAATTCGAGATGGGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000334389.5 |
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| CDS CAA 72 bp | AGCAGTTTAGTTGCAGTGTCTTTGCCCCATCTCGAATaGCTACTAATGGTAAAAGGAGAATGGTGTCAATTA | + |
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Preference number: 6 (lower is better) Translates to: SSLVAVSLPHLE*LLMVKGEWCQL Trigger: TAATTGACACCATTCTCCTTTTACCATTAGTAGCAATTCGAGATGGGGCAAAGACACTGCAACTAAACTGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000334389.5 |
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